Trematomus bernacchii (emerald rockcod): 117477833
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Entry
117477833 CDS
T09643
Symbol
nup153
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup153
KO
K14296
nuclear pore complex protein Nup153
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03013
Nucleocytoplasmic transport
tben03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117477833 (nup153)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
117477833 (nup153)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117477833 (nup153)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117477833 (nup153)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup153
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
117477833
NCBI-ProteinID:
XP_033980493
LinkDB
All DBs
Position
Unknown
AA seq
1491 aa
AA seq
DB search
MTAIRRRNTDRHSDERAMAATGGGKIRSRRYHIASKPYAKSKQPSGIISRVTDTVKSIVP
SWLQKYFKKEDAPEGGGDGLGMEQNCQTPPPPNGSEEGPPLLDGRDSPEPSTGNTEPSTS
RASLNFQEYVLSRPPLSRSHLHFPPLDASSPTLGSPSNLFSQPSTSSAPGPFSTGFSLVK
EIKDNLSQHEDDNISTTSGFSSRASEKDVPTSKTASLPQLWSPETDRTHSHGSHHAHQSS
LKRPAFNLSVFGTSSNSSLNSTGLNSSQLGDSPFYPGKTMYGGAAAVRSARGRSGTPYQA
PVRRQIKAKPAGAQPCGVTSATARRILQSLERMSSPLADARRIPSAASSPLSASMDGSNL
DVSHYQSKKKRMEPSLPPVQKLMVPAAASVSGNRSVSFRPTLTPGGVQGWSRTLDRTPRD
TPTRQSPKLPEATPGPSKSTMGSSGPAYPLSSTPAASSAGSGGGKMKRERMSARPSSKRV
DEEEMAELPDLPTIALPIHTMPSFSFTSPLPPPTTTSTTISTTNFMPMTPIKETVTNKEL
PTASTPPCVPFTFSSPIVKATAGSPPSLSPSAEFTFSAPVAKLGPSMSNGNLASPIVAVK
LTPSKSTEDFEGPFKPAKTLKQGSVLDLLKAPGFASPVARTSPDEAPQLSSTQSTTPSFS
SSTTTTTTSSLTSIGFGATFKAPPGWSCDVCMVQNKPSDTKCVCCCAPQPKSMDSKPLTA
TPDVVESSGSSTTSTSAGFGTMFSKSAGTWDCDTCLVLNKPDAVKCVACETAKPGTGLKP
STTLPSAFSAVKTVSLPTAPVATGFTGFGDKFKKAEGAWECDTCMVENKAEDTKCVACSS
AKPGASSLASSAPLIGFGDAFKKPEGVWDCDVCLVQNKAADVQCVACQTAKPGAIVEPKA
FGSSFGSSAGGTSGTTSGGFKFGTTDSTLGSGSAGFKFGGSLTESSSSSSGGFKFGVPSE
STSNDTTASSGFKFGSSFGDASSNDKKSDPPAAGSGFKFGASGGIPFGTGSSSTESNSSK
TGFTFGLSKPEEKTPDSSSSSQEKSESAASSNDTASTNSTSSKGSVFGRLGDRSSTTPTP
PGGSTLGSLQADKEPAAPTFAFGKPEEKKEAAAASSAPSGFLFGAASKDAEAAPAPAATG
GFSFSKTSAPTEQPPPTFSFGKPADKSETTTAEAPNPSFTFGQSAADSSAAPKPAFSFMA
GNPIVNSTTSTSTTPTPSLFGSSTPSSSSSTQAPFAAPSTLMFGQPAASSTDAPPAKAFL
FGQSQDSQPAAPSAVNLNSISSPAQPFLFGAPAAAAPPPPAAAAAAAAAAAAPSFGFGTA
APPAASSAAPSAAPSPFAFSPAPSAGFGANQTPSFGSTFGSPFTASSSQPPAFGVKPNAA
PVFGQQNNSTPVFGAAANSAPGGGFQFGGASAFGAPNNASGGGVFTFGGGPAASPAPPAN
PSIPPQAPGGGFNFSQPPAFNIGAAKTFTASPAGQPAIAGRKIKTAVRRRK
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgacagctatccggcgccgaaacaccgatagacactcagacgaaagagccatggcggcc
acgggtggagggaaaattagaagcaggagatatcacatcgcctctaaaccttacgccaag
agtaaacagccgtcaggcatcatcagtcgagtgacagacacagtaaagagcatcgttcct
tcctggctgcagaaatacttcaagaaggaagatgctcctgaaggaggaggagatggactg
gggatggagcagaactgccagactcctcctcctcccaatggcagcgaagagggtcctcct
ctgcttgatggacgagactccccagaaccaagcaccggtaacacagagccttcaaccagc
cgggcttccctgaactttcaggagtatgtgctttctcggccacctctgagtcgttcccat
ctccactttcccccgctggatgcctcttccccgaccctggggtcccccagcaacctcttc
tcccaaccctccacctcctcagcccctggacccttttccacaggcttctccttggtcaaa
gaaatcaaggacaacctatcgcagcacgaagatgataacatctccaccactagcggattc
tcctcccgcgcctcagaaaaagatgttcccacttccaaaacagcatcacttccacaactt
tggtccccagagacggaccgaacgcactctcacggctctcatcatgctcaccagtccagt
ctgaaaaggcctgctttcaacctgtctgtatttggaacttcctccaattcgtcattaaac
agcacagggctgaactccagccagctcggagattcccccttctatcccgggaagaccatg
tacgggggggcagcggcagtcaggagcgctcgaggtcgttctggaacaccgtaccaggcc
ccagtgaggagacagatcaaggccaagcctgctggggctcagccctgtggggtgaccagc
gccacagccaggcgcatccttcagtccctggagcgcatgtccagccccctcgctgatgca
aggagaatcccatcggctgcctcgtcccccctttcagcatcaatggatggttcaaatcta
gatgtttcacattatcagtcgaaaaagaaacgtatggagccctccctccccccggtgcag
aagctcatggttcctgctgcagcgtcggtgtcaggaaaccgctccgtgtcgtttaggccg
actctgactcctggaggggtccaggggtggagccgaactctggacaggactcccagagac
acgcccacaagacaatcaccgaaactacctgaagcaaccccaggtccatctaaaagcaca
atgggttccagtggcccggcctatcctctgtccagcacgcctgcagccagcagcgcgggc
tctgggggggggaagatgaagcgagagaggatgagtgcacgaccttcctctaaacgcgtt
gatgaggaagagatggctgagctaccggacctaccaaccatcgcccttcccatccacacc
atgccttccttcagctttacctccccactcccacctcccacaaccacctccaccaccatc
agtacgaccaacttcatgccaatgactcccattaaggagactgtcacgaataaggagcta
ccaacagcctcgacccctccctgtgttccttttacattttcctcccccattgtcaaagct
actgctggtagtcctccttccctttccccctcagctgaattcacttttagtgcacctgta
gcaaagttgggtccctccatgtcaaatgggaacctggcctctcccatagtcgcagtgaag
ttaaccccaagcaaaagcacagaagactttgaaggacctttcaaaccagccaagaccctg
aagcagggcagcgtgctagatcttctcaaagcacctggctttgcttctcctgttgctcgg
acctccccagacgaagctccccagctgagctcaacacaatcaacaaccccctccttctcc
tcctccaccaccactacaaccacctcctccctcacatcaataggctttggtgctacgttc
aaagctccaccaggctggagctgtgatgtctgcatggtgcagaacaagccatcggacacc
aagtgtgtgtgctgttgtgccccacagcccaaatctatggacagtaaacctttaacagcc
accccggatgtggtagagagcagcggctcctccaccacatcaacctcggcaggttttggc
accatgttctccaaatccgcaggaacctgggactgtgatacgtgtctagttctaaacaaa
cctgatgcagtcaaatgtgtggcctgcgaaacggccaaacctgggacagggcttaaaccc
tcaacgactcttccttctgccttctcagctgtaaagactgtatccctacccacggccccc
gtcgctacagggtttactggatttggagacaagttcaaaaaagctgagggagcatgggaa
tgtgatacatgtatggtagaaaacaaggcagaggacacaaagtgcgtggcctgcagcagc
gccaaaccaggagcctcttctttagccagcagtgctccattgattgggtttggagatgcg
ttcaagaagccagagggtgtctgggattgtgacgtctgtctagtgcagaacaaggctgct
gatgtacagtgtgtggcctgtcagacagccaaacctggagctattgtggagcccaaagct
tttggttcgtctttcggttcgtcagctggtgggacttcaggcactacttctggaggattt
aagtttggcacaacagacagtaccttgggatccggatccgcaggtttcaagtttggaggc
tcattaacagagtcctcctcttcatcgtcaggtggattcaaatttggagtcccatcagaa
agtacatctaacgacactactgcctcatcggggtttaagtttggcagctcatttggggat
gcctctagtaatgacaaaaagtcagacccacctgccgcaggttctgggtttaagttcgga
gccagcggtgggataccgtttggaaccggatcctctagcacagaaagtaactcctctaag
accggcttcacctttggactttcaaaacccgaagagaaaacacccgacagctcctcatct
tcacaagagaaaagtgaaagcgcagcatcatcaaatgacaccgcatccacaaactcaact
tcaagcaaggggtctgtatttgggagattgggcgatcgtagttcaacgacccccacacca
ccggggggctccacgttgggatctctacaggcggacaaagagccagctgctcccaccttt
gcctttgggaagccagaggaaaagaaggaagccgccgccgcgtcctcggctccatccggc
ttcctcttcggagctgctagtaaagatgctgaggctgctccagcaccggccgccactgga
ggattctccttcagcaagaccagtgctccaacggaacaacccccacccacttttagcttt
ggcaagccagcagacaagagtgaaacaactactgcagaggccccgaacccgtctttcacc
tttggacagagtgcagcagattcttctgctgctccaaaaccagcattttcctttatggct
ggtaatcccatcgtcaactccaccacctctacatccaccaccccgacgccctctctgttc
ggctcctccacccccagcagcagcagcagcactcaggctcccttcgcagctcctagcact
ttaatgttcggtcagcctgctgcctcctccaccgacgctcctccggccaaagccttcctg
ttcggccagagtcaggacagccagccggcggcaccgtcagcggtcaacctgaactccatc
tcctcccccgctcagcccttcctcttcggtgctcctgctgccgctgctcctcctcctcct
gctgctgctgctgcggctgctgctgctgctgctgctccatcattcggcttcggaacagca
gcgccccctgctgcctcttctgcagctccgtctgcagctccctctccatttgcgttcagc
ccggccccctctgctggatttggggcgaaccagaccccttcattcggctccacctttgga
tctcccttcaccgcctcatcctcccagcccccggcatttggagtcaaacccaacgccgcc
ccggtgtttgggcagcagaacaactccacacccgtctttggggccgctgctaattctgca
ccaggcggaggcttccagtttggaggagccagtgcatttggagccccaaacaacgcctca
ggaggaggagtgtttactttcggaggagggcctgccgcttccccggccccccctgccaac
ccctccatcccaccccaggcccctggaggtgggttcaacttttcacaaccccccgcattc
aatattggggccgcaaaaaccttcaccgcctcccctgctggacagccggcgatcgctggg
cgtaagatcaagacagcggtgcggcgcaggaagtaa
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