Trematomus bernacchii (emerald rockcod): 117477836
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Entry
117477836 CDS
T09643
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117477836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117477836
03036 Chromosome and associated proteins [BR:
tben03036
]
117477836
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117477836
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117477836
mRNA degradation factors
5'-3' decay
Decapping complex
117477836
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117477836
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
117477836
NCBI-ProteinID:
XP_033980500
LinkDB
All DBs
Position
Unknown
AA seq
489 aa
AA seq
DB search
MATARTENSGPVLMGLNKQNGQLRGQTKPAPVQPAPTTQGKAPAAPQTVGGAAQDGGGIK
FGDDWKKSLKLPPRDDRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQALVMVPTRELALQVSQISIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKHRQILLYSATFPISVQKFMSKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPSSIDKSLYVAEFHTSGGDCDVEEIEE
KPGRQQDGK
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagccagaacagaaaactctggccccgtcctcatgggactgaacaagcagaac
gggcagctcagaggacagaccaaaccagctccagtccagccagcacccacaactcaagga
aaggctccggctgcaccccagacagtgggcggtgccgctcaggacggaggaggcatcaag
ttcggagacgactggaagaagagcctaaagctccctcccagagacgacagagtcagaacc
tctgatgtgacgtctactaaggggaatgagtttgaagattactgtctcaaaagagaactc
ctgatgggtatctttgagatgggttgggagaaaccttcccctatccaggaggagagcatt
cccatcgccctgtctggacgggatattctggctcgggctaagaatggaacgggaaaaagt
ggagcctatctcatcccaatgctggagagaatagacctgaagaaggactacatacaggca
cttgtcatggtgcccacccgggagctggcactgcaggtgagccagatctccatccagatc
agcaagcacctggggggggtcaaagtcatggcaaccacagggggcaccaacctgcgagat
gacatcatgcgtctggatgagaccgtgcatgtggtcattgccacgcctggtaggatcctg
gacttgataaagaaaggagttgcaaaagtggatagagtccagatgatggtgatggatgag
gcggataagctgctgtctcaggattttgtggtgctcattgaggatatcatcagcttcctg
gccaagcacaggcagatcctgctctactctgcaaccttccccatcagcgtgcagaagttc
atgtccaagcaccttcagaaaccctacgagataaacctgatggaggagctgactctgaag
ggcatcactcagtactacgcctacgtcacggagaggcagaaagtccactgtctcaacacg
ctgttctccaggcttcagatcaaccagtcgatcatcttctgtaactccactcagagggtg
gagctgttggccaagaagatcactcagctgggatactcctgcttctacatccatgccaag
atgatgcaggaatacagaaaccgtgtgttccacgacttcagaaatggactgtgcagaaac
ctggtctgcactgatctgttcaccaggggcattgacatccaggctgtcaatgtggtcatc
aacttcgacttccccaagaacgctgagacgtacctccatcgcattggaagatcagggagg
ttcggtcacctgggcctggccatcaacctgatcacatcagaggaccgcttcaacctgaag
tccatcgaggaccagttggtgaccgacatcaagcccatccccagcagcatcgacaagagc
ctctacgtggccgagttccacacttccggaggagactgcgacgtggaggagatcgaggag
aaaccaggacgccaacaggacggcaaataa
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