Trematomus bernacchii (emerald rockcod): 117477954
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Entry
117477954 CDS
T09643
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tben00535
]
117477954
Proteoglycans [BR:
tben00535
]
Extracellular matrix (ECM) proteoglycans
Others
117477954
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
VWA_3
DUF4959
Motif
Other DBs
NCBI-GeneID:
117477954
NCBI-ProteinID:
XP_033980672
LinkDB
All DBs
Position
Unknown
AA seq
1864 aa
AA seq
DB search
MHFSVGLSLCLLGFALVSLFPQPARGQVSSPRRFRAKIQSPTKLHVSWKEPKGQFDSYKV
IYTTEPGGEQKDIEVLKQEAKLVIEDYDPSKEYNFKIIALSGGQQSKPLQAKHEAQQSGV
AMVQSQKRQDSVTREEDNEISEAEEEFMCKTPAIADIVILVDGSWSIGRINFRLVRTFLE
NLVKAFSVEFDKTRIGLAQYSGDPRIEWHLNAHTTKASVIDAVKNLPYKGGNTLTGLALT
FILENSFKPESGSRPGVPKIGILITDGKSQDDVIPPAQSLREAGIELFAIGVKNADENEL
KAIASPPEETHVYNVADFSVMSDIVEGLTKTVCDRVDVLDKTLKVGREPDPQPTSMEPPR
DLVTSEITARTFRVRWTHASGQVEKYRVVYYPASGGQPEEKVVHGTENSVELNYLNSLTE
YQVAVFAVYRSSASEALRGSATTLALPMVNDLELFDITHNSMMVRWKIAAGASGYMILYA
PLTEGDHADEKEVKVEDSVNEVELEELTPATEYTVTVYALYGEEASDPMTSQQTTLPLTP
ARNLRFSDVDHSSARLTWDTASRKANGYRVMYVKTTGAQTTEVDVGRVTTWLLGNLTSLT
EYTVGVFAIYDEGQAEAVTDSFTTKTVPDPLDLKSTDISTDSFRVFWKHPASDVMLYRLT
WISTDGGDSEEVLIDGKVNTYLIKGLTPLTDYEVMLAAIYKNEVESDEVVLVESTVEILT
TIVTTTTTTATPRYGVRNMRIDEETTYSMRVAWQPVDSRNVRHYRLSYISAKGDRAEETR
TVPTGQTSLVLQPLLSDTEYKIAITPVYPEGEGPPAARMGRTLPLSAPKNLRVSEEWYNR
FRISWDVPPSPTMGYRVVYQPISAPGPALETFVGEDVNTMLIVNLLSGTEYSVKVIASYT
TGSSEALSGRAKTLYLGVTNLSAYQVRMTSFCGQWQAHRHASSYRVVMESLLNGQKQEAK
LTGGANRHCLNNLKANTQYKMSVYAQMQDGTEGPAVTITEKTLPIPTPAPTKPPSTTPLP
TIPPAKEVCKAAKADLVFLVDGSWSIGDENFLKIIRFLYSTTGALDRIGPDGTQVAIAQF
SDDARTEFKLNSYGDKERLLDAINKISYKGGNTKTGRAIQHVKDNIFTTEGGVRRGIPNV
LVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSDRHVFFVDDLDA
FAKIEEKLVTFVCEAATATCPSVPMSGSTTPGFRMMELFGLVENRYSSVPGVSMVPGTFN
TFPSFHLHSDAFLAQPTRFIHPEGLPSDYTITLLFRLLPDTPEEPFALWEILNKNNEPLV
GVILDNGGKTLTFFNNDYKGEFQTVTFEGPEIKKLFYGSFHKLHIAIGKTSAKVVIDCSM
VAEKNINAAGNITIDGLEVLGRMVRSRGNKDNSAPFQLQLFDIVCSTSWAGRDKCCELPG
LRKEVDCPAMPKACTCTQDSKGPPGPTGPPGGPGIRGARGDRGEPGPVGPGGPVGDTGLP
GPQGSQGPQGPSGRSIMGGPGAPGEGGQKGEAGPQGIQGVSGRPGAPGREGPAGVRGLLG
KEGSQGRPGPSGTIGTPGAPGSQGNPGSPGKQGELGPPGVLGGKGEKGERGDLQSTASVQ
TIARTVCEQLIESHMARYNSILNQAPSPPVSIRTAPGPPGEPGRQGTPGTQGEQGPSGRP
GFPGQNGQNGQPGERGQLGEKAEKGSPGVGVQGPRGPPGPPGTAGQGRTGSQGTSGRPGN
SGTSGRPGVPGPVGSAGPPGYCDQNSCMGYNVGEGEDVTDQGPVPAVQLPPNVFQNYGEA
EEDDPYRYYEPSYPAPRPVAPDDPSLALEDMDLSSPGVHRSRGKRDGPKRKQKRAAKTPP
GLSK
NT seq
5595 nt
NT seq
+upstream
nt +downstream
nt
atgcatttctcagtcggactgagtctctgcctgctaggcttcgctcttgtctctctgttt
cctcagccagcgcggggtcaagtttcatcgccacggagatttcgtgccaaaatccagagt
cccaccaagctgcatgtgtcgtggaaagagcctaaaggacagtttgacagctacaaggtc
atttacaccacagagccaggtggagagcagaaggacattgaggtattgaagcaggaagca
aagctggtcattgaggactatgacccctccaaagaatacaactttaagataattgctctg
agtggaggacagcagagtaaacctcttcaggccaaacatgaagctcagcaatcaggcgtt
gcgatggttcaatctcagaaaagacaagacagcgttaccagagaggaagacaacgagatc
tcagaagctgaagaggagtttatgtgtaagactccagccatagccgacattgttattctg
gtggacggctcctggagtatcggccgcatcaacttcaggctggtcaggactttcctggaa
aacctggtcaaggccttctcggtggagtttgacaagaccaggatcggcctggctcagtac
agtggagaccccaggatcgagtggcaccttaacgctcacaccaccaaagcgtctgtgatc
gatgctgtgaagaacctgccatataaaggagggaacacactgacaggcctggctctgacc
ttcatcctggagaacagcttcaaacccgagtctggatccaggcccggtgttcccaagata
ggaattctcatcaccgacgggaagtcccaggatgatgtgatcccccctgcacagagcctg
agggaggctgggatagaactgtttgccattggtgtgaagaacgctgatgagaacgagctg
aaggccatcgcctctcctcctgaggaaactcacgtctacaatgtggcggacttcagcgtg
atgagcgacatcgtggagggcctcaccaagacggtgtgcgaccgagtggatgtgctggac
aagacgctcaaagtgggaagagaacctgacccccaacccacctctatggagccgccccgc
gacctggtgacatcagagatcactgcccgcaccttccgggtgagatggacgcacgcgtcg
ggccaggtggagaaataccgcgtggtctactacccagccagcggggggcagccggaagaa
aaggtggtgcacggaacagagaacagtgtggagctgaattacctgaactctctgacagag
taccaggtggctgtttttgccgtctaccgcagctcggccagcgaggccctgagaggaagt
gctactacattggccctgcccatggtgaacgacctggagctgtttgatatcactcacaac
tccatgatggtccgctggaagattgccgccggggcttctgggtacatgatcctctacgcc
ccgctgactgagggagaccatgcagacgagaaggaggtgaaggttgaggattccgtgaac
gaggtggagctagaagagctgacccctgccacagagtacactgtgacggtgtacgccttg
tacggagaagaggccagcgaccccatgaccagccagcagacaacattaccgttgaccccg
gcgaggaacctgcgtttctcagacgtggaccacagctccgcgcgcctcacatgggacacc
gcctccaggaaggccaatggttaccgcgtcatgtacgtcaagaccaccggagcccagacc
actgaggtggatgttggccgtgtgacaacctggttgcttggaaacctgacctccctgacg
gagtacactgttggtgtctttgccatctacgacgagggacaagctgaggctgtgactgac
agcttcaccacaaagaccgtcccggaccccctggacctgaagagcactgacatctccacg
gacagcttcagggtgttttggaaacacccggcctctgatgtcatgctgtaccgactcacc
tggatatccacagatggaggagacagtgaagaggttctgatcgacggaaaagtgaacacc
tacctgataaaaggactcacccccctcacagactacgaagtcatgctcgctgcgatctat
aagaacgaggtggagagtgacgaggtggtcctcgtagagtccaccgttgaaatattgacc
accattgtaacgacgaccaccaccaccgcaactcctcgttacggcgtgcggaacatgagg
attgatgaggaaaccacgtacagtatgcgggtggcctggcagcctgtggactcgaggaat
gttcgacattatcggctgagctacatcagtgccaagggagaccgggcagaggagacgagg
acggtgcccacaggtcagaccagcctggttttgcagcctctgctgtcagacacagagtac
aaaatcgccatcactcctgtataccctgaaggagagggaccaccagcggcgcggatggga
cgaacacttcccctctcggctcctaagaacctgcgtgtgtcggaggaatggtacaaccgc
ttcaggatcagctgggatgttcccccttcccccaccatgggctacagggtcgtctaccag
cccatatctgctccgggccccgctttggagacgttcgtgggggaggacgtgaacaccatg
ctgatcgtcaacctgctgagtgggacggagtacagcgtgaaggtcatcgcctcctacacc
acaggatccagtgaggccctttcagggagggccaagaccttgtatctgggggtgaccaac
ctgagtgcgtaccaggtgaggatgaccagtttctgtggccagtggcaggctcaccgacac
gccagctcctacagagtggtcatggagtctctgctcaatggtcagaagcaggaggcgaag
ctgaccggaggagccaacagacactgtttgaacaacctgaaggccaacacgcagtataag
atgagtgtgtacgctcagatgcaggatggcactgaagggcccgcagtcaccatcactgag
aaaacattacccatcccaaccccagcaccaaccaagccccccagcaccacaccgttaccc
acaatcccccctgccaaggaagtctgtaaggcagccaaagcagacctggtgttcctggtc
gacggctcctggagtatcggggatgaaaacttcctgaagatcatccgcttcctgtacagc
accaccggagctctggaccggatcggccccgatggaactcaggtggccatcgctcagttc
agtgacgacgccaggacagagttcaaactgaactcgtacggcgacaaggagcgactgctg
gacgccatcaacaagatctcctacaagggaggaaacaccaagacagggcgcgccatccaa
catgtgaaggataacatcttcacgacagaggggggagtcaggagggggatccccaacgtc
ctggtggtcctcaccgacggtcgatctcaggatgacgtcaacaaggtttcaaaggagatg
cagatggaaggctacattgtgtttgcgattggctttgctgacgccgactacggggagctg
gtgagcatcgccagtaaacccagcgacagacacgtgttcttcgtggacgacctggacgcc
ttcgccaagatcgaggagaagctggtgaccttcgtgtgtgaggccgccactgccacgtgt
ccatcagtaccgatgagtggcagcacaacaccaggtttccgtatgatggagctctttggg
ctggtggagaataggtacagcagtgtccctggcgtttccatggtacctggcaccttcaac
accttccccagtttccacctgcacagtgacgccttcctggcacagcccaccaggttcatc
caccctgaagggctgccctcagactacaccatcaccctgctgttcaggctgctgcccgac
actccagaggagcccttcgccctctgggagatcctcaacaagaacaacgagccgctggtg
ggagtcatcttggacaatggaggaaagactctgacattcttcaacaacgactacaaagga
gagttccagacggtcaccttcgaagggccagaaataaagaaactcttctatggcagcttc
cataagcttcacattgccatcggcaaaacgagcgccaaagtggtgatcgactgcagcatg
gtggctgagaagaacatcaacgcggcggggaacatcaccatcgacgggctggaggttctg
ggcaggatggttcgctcccgagggaacaaggacaactctgcaccgttccagctgcagctc
ttcgacatcgtctgcagcacctcctgggccggcagagacaagtgctgcgaactgcctggt
ctgagaaaggaggtggactgccccgccatgcccaaagcctgcacctgcacccaggacagc
aaaggcccccccggccctactggacccccaggaggccctggaatcagaggagcccgaggt
gaccgcggagagccaggccccgtgggaccaggtggtccagtcggggacacaggtttacca
ggacctcaggggtcccaaggaccacagggaccgagtggacgctccatcatggggggccca
ggtgctccaggagagggaggacagaaaggtgaagctggaccacaaggaatacagggagtt
tctggcagacctggagctccaggccgagaaggacctgcaggagtcagaggcctgctaggc
aaagaaggctcccagggcagaccgggcccctcaggaactattgggacgccaggagccccg
gggtcccagggtaaccccggctctccagggaaacagggagaactgggccccccgggtgtt
ctgggaggcaagggggagaaaggtgaacggggagacctccagtccacagcttcagttcag
accatcgccaggacggtctgtgagcagctcattgagagccacatggctcgctacaactcc
atcctgaaccaggcgcccagtccaccagtgtccatccgcacggcgccaggaccccccgga
gagcctggccgacaggggaccccagggactcagggagagcaggggccctcaggaagaccc
ggcttcccagggcagaacggacagaacgggcagccaggagagagaggtcaactaggagaa
aaggcggagaaagggtctccaggcgttggagtccaaggccccagaggacccccaggcccc
cccggaaccgcggggcagggcagaactggcagccagggcacctcaggcagacctggaaat
tctggaacttctgggcggcccggggtcccggggcccgtcggctccgctgggcccccgggg
tactgcgaccagaactcctgcatgggctataacgttggagagggtgaggatgtcactgac
cagggccctgtccccgcagtccaactgccgcccaacgtcttccagaactacggcgaggcg
gaggaggacgacccgtaccggtactacgagcccagctacccggcccctaggcctgttgcc
cccgacgacccctcgctcgccctggaggacatggatctgagttcccccggagtccaccgc
agcagggggaagagagacgggcccaagaggaaacaaaaaagagcagcgaagacgccgcct
ggactaagtaaatga
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integrated database retrieval system
