Trematomus bernacchii (emerald rockcod): 117477966
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Entry
117477966 CDS
T09643
Symbol
pabpc1b
Name
(RefSeq) polyadenylate-binding protein 1b
KO
K13126
polyadenylate-binding protein
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03015
mRNA surveillance pathway
tben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117477966 (pabpc1b)
09123 Folding, sorting and degradation
03018 RNA degradation
117477966 (pabpc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117477966 (pabpc1b)
03041 Spliceosome [BR:
tben03041
]
117477966 (pabpc1b)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117477966 (pabpc1b)
mRNA cycle factors
Stress granule specific factors
117477966 (pabpc1b)
Spliceosome [BR:
tben03041
]
Complex C
Other components
Complex C specific factors
117477966 (pabpc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_7
RBD_RDR6
RRM_occluded
HTH_58
YflT
POP1_C
Motif
Other DBs
NCBI-GeneID:
117477966
NCBI-ProteinID:
XP_033980693
LinkDB
All DBs
Position
Unknown
AA seq
630 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYVKNFGEDMDEEKLRDVFSKYGQAMSIRVMTDESGKSRGFGFVSFDR
HEDAQQAVDEMNGKEYNGKLIYVGRAQKKMERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFTPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRA
AYYPAAGQMAQIRPSPRWATQGVRPQHFQNMPGAMRPSAPRPQTFGAMRPSSQMPRMMST
QRVAQPMGPRPAAAAAVPVRGVPQYKYAPGVRNPQQHMPAQQQVAMQQPAVHVQGQEPLT
ASMLAAAPPQEQKQMLGERLFPMIQNMHLGLAGKITGMLLEIDNSELLHMLESPESLRSK
VDEAVAVLQAHQAKEATQKPVPTPAGVATA
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgctcccagctaccccatggcatccctgtatgtcggggatctgcaccaa
gatgtgaccgaggccatgctgtacgagaaatttagccctgccggagctatcctatccatc
agggtctgcagggacatgataacccggcggtcccttggatacgcctatgttaacttccaa
cagccagcggacgccgagcgtgcactggacaccatgaactttgacgtgatcaaggggcgg
cctgtgcgcatcatgtggtcgcagcgcgatccgtcactgagaaagagcggcgtgggaaac
atcttcatcaagaatcttgataagtctatcgacaacaaggctctatacgacaccttctct
gctttcggcaacatcttgtcatgcaaggtggtttgtgacgagaatggctctaaaggctac
gggtttgtgcattttgagactcaagaggcagctgaacgagccattgagaaaatgaatggc
atgctcctcaatgaccgaaaagtattcgtgggccgtttcaaatcccgcaaagagcgcgag
gccgagttgggtgcccgcgcaagggagtttacaaacgtctatgttaagaactttggtgaa
gacatggatgaggagaagctgagggacgtcttcagtaaatacgggcaagccatgagtatc
cgagtcatgaccgatgagagcggaaaatctcgaggcttcgggtttgtcagctttgacagg
catgaggatgcccagcaggcggtggatgagatgaacgggaaagagtataatggcaagctc
atctacgttggccgtgcccagaaaaagatggagcgacagacagagctcaagcgcaagttc
gagcaaatgaaacaagaccgcatgactcgctaccagggtgtcaatctgtacgtgaagaac
cttgatgatggacttgacgatgaacgtctgcgaaaggagttcacaccgtttggcacaata
accagtgccaaggtcatgatggaaggcggacgcagcaaaggtttcggctttgtctgcttc
tcgtccccggaggaggccaccaaagcggtgacagaaatgaatggacgcatcgtagccacc
aagccattgtatgttgccctggcacagcggaaagaggagcgtcaagctcacctgaccaac
cagtacatgcagcgcatggccactgtgcgcgcagtgccaaacccagtcatcaatccctac
cagccagccccgccgtctggctatttcatggcagccatacctcaggcccagaaccgtgct
gcttactacccagctgctgggcagatggcccagatccgcccgagcccccgctgggccaca
caaggggtccggccacaacatttccagaacatgccaggtgcgatgcgtccctcagcacca
cgccctcagaccttcggtgccatgcggccgtcctcccagatgccccgcatgatgtccacc
cagcgtgttgctcagcccatgggcccccggccagctgctgcagctgcagttcctgtgcgc
ggagtccctcagtacaaatatgccccaggagtccgcaatccccagcagcacatgcctgcg
cagcaacaagttgccatgcagcagcctgctgtccatgttcagggacaggagcctctgaca
gcctccatgctggctgccgctcccccacaggagcagaagcagatgctgggtgagcgtctg
ttcccaatgatccagaacatgcacctaggtttggccgggaagatcaccggcatgttgctg
gaaattgacaactcagagctgctccacatgctggagtccccagagtctctccgctcaaag
gtggatgaggcggtggctgtgcttcaggcccaccaggctaaggaagccacccagaagcct
gtgccaaccccagctggagtcgctactgcctaa
DBGET
integrated database retrieval system
