Trematomus bernacchii (emerald rockcod): 117477996
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Entry
117477996 CDS
T09643
Symbol
sfpq
Name
(RefSeq) splicing factor, proline- and glutamine-rich
KO
K13219
splicing factor, proline- and glutamine-rich
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tben01009
]
117477996 (sfpq)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tben03021
]
117477996 (sfpq)
03041 Spliceosome [BR:
tben03041
]
117477996 (sfpq)
Protein phosphatases and associated proteins [BR:
tben01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117477996 (sfpq)
Transcription machinery [BR:
tben03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117477996 (sfpq)
Spliceosome [BR:
tben03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
117477996 (sfpq)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
NOPS
RRM_10
RRM_7
Motif
Other DBs
NCBI-GeneID:
117477996
NCBI-ProteinID:
XP_033980738
LinkDB
All DBs
Position
Unknown
AA seq
652 aa
AA seq
DB search
MSRFNNNRGGFAMNHFQQRRGGGGPGGPMRGGIMGNPHFRNHPFQNQNQNQNRRGANNNL
NRPPNQGQNTPQKPPLNQSLPIIPPPTPGPALTMKGPMQQIQKPAQQPNATPEKQPEPKP
ATPAPQPKIQSPPPKPNITSPPPNQANKNQNQELKSPVVNTNGQKPPPNPIPKPGPVQGP
KPPQQSQRSGPNQGNNGQRAGPHQGQRTGPFQGQRTGPPAMRPKQDQVVRMCGNNDGAET
DGSHDTSFKATLSMLLKPGEKTYTQRCRLFIGNLPNDISEEDFKKLFAKYGEPSEVFINK
SKGFGFIRLESRALAEIAKAELDDKPMRSRPLRVRFATHSAALSVKNLSPFVSNELLEEA
FSQFGMVERSIVIVDDRGRPTGKGIVEFASKPAARKALDRCNEGVFLLTTSPRPVVVEPL
EQYDDEDGLPEKLAQKNPRYQAEREEPPRFARPGTFEYEYSKRWKSLDDMEKQQRQQVEK
NMREARDKLESEMEDAFHEHQASMLRQDLLRRQEELRRMEEVHSQEMQKRKEMQIRQEEE
RRRREEEMIRKRDMEEQMRRQREENFRMGNFMDRDREMRMNPGMNDMPFGGANQKFPMGF
EGQKGPAAGGLMANEMRNERFAQGGPRGMGPGTPGFGRVREEFDGPAKKPRF
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgattcaacaataatcgtggcggcttcgcgatgaatcatttccagcaacgcaga
ggaggcggtgggccaggcggccctatgaggggtgggataatgggaaacccacatttcagg
aaccatcctttccagaaccaaaatcagaaccaaaatcggaggggagccaataataactta
aacagacctcccaaccaggggcaaaataccccacagaagccgccacttaaccagtcgctg
ccaattattcctccaccaactcctggcccagctctcactatgaaggggccgatgcagcag
attcagaaaccggcacaacagcccaacgcaacaccagaaaagcaaccggagccgaaaccg
gcaacccctgcaccgcaaccgaagattcagtcacctcctccgaaacccaacatcacttcc
cctcctccgaaccaggcgaacaagaaccagaaccaggagctgaagtcaccggtagtaaac
actaatggacagaagccgcctccgaacccgatcccaaagccggggcctgtacaaggccca
aaacccccccaacaaagtcagaggtctggcccaaaccaaggcaataacggccagcgagca
ggccctcatcaaggccagaggacaggcccctttcagggccagcggacaggacccccggca
atgaggcccaaacaggaccaagtcgtaagaatgtgcggaaacaacgacggcgccgagacc
gacggcagccatgatacgtcgttcaaggcgaccctctccatgctgctgaagcctggcgag
aagacgtacacgcagcggtgtcgcctgttcattggaaatctccccaacgacatctcagag
gaagatttcaagaagctgttcgcaaaatatggtgagcccagcgaggtcttcatcaacaaa
agcaaaggctttggattcatcagactggagtcccgtgcactcgcagagatagcaaaagca
gagttggatgacaagccgatgagaagcagacctctgcgtgttcgatttgccacacactct
gccgctttgtctgtgaagaacctgtcaccatttgtttcaaacgagctccttgaggaagcc
ttctcacagtttggaatggttgagcgatccattgtcatcgtggatgatcgcggacgcccc
acaggcaagggaattgttgagtttgcctccaaacctgccgctagaaaggcattggatcgt
tgcaacgagggtgtcttccttctcaccacgtccccacggcctgttgttgtggagcctctg
gagcagtatgacgatgaagatggtcttccagaaaaactagcacagaaaaaccccagatat
caagcagagcgtgaggaacctcctcgttttgctcgtcctggtactttcgaatacgagtac
tccaagcgctggaagtccctggatgacatggagaagcagcagaggcagcaggtggagaag
aacatgcgcgaggcccgtgacaagctggagagcgagatggaggacgccttccacgagcac
caggccagcatgctcagacaggatctgctgaggcgacaggaggaactgaggcgcatggag
gaggtgcacagtcaggagatgcagaagaggaaggagatgcagatcagacaagaagaagag
cgtcggcggcgggaagaagagatgattcgcaagagggacatggaagaacagatgcgtcgc
cagcgtgaggagaacttcaggatgggcaacttcatggatagggacagggaaatgagaatg
aatcctggcatgaatgatatgccatttggtggagccaaccagaagttcccaatgggcttt
gagggacagaagggaccagctgcaggaggcctgatggccaacgaaatgcgcaacgagcgc
tttgcccagggcggtcctaggggaatgggtcctggtacccccgggttcggcagggtccgt
gaggagtttgatggtcctgctaagaaaccccgtttttaa
DBGET
integrated database retrieval system
