Trematomus bernacchii (emerald rockcod): 117478013
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Entry
117478013 CDS
T09643
Symbol
vps50
Name
(RefSeq) syndetin
KO
K23288
syndetin
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117478013 (vps50)
Membrane trafficking [BR:
tben04131
]
Protein recycling
Others
EARP complex
117478013 (vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Kgd4-YMR31
Motif
Other DBs
NCBI-GeneID:
117478013
NCBI-ProteinID:
XP_033980758
LinkDB
All DBs
Position
Unknown
AA seq
966 aa
AA seq
DB search
MQKIKSLMARQGLKSPQESIADLSPVENLRIPSKEELRELREQPIDPQAEQEMIDSIEEL
YYSNDSFDMVQHELEKLPPELNLQELEEYRDKLKKQQASVSKKVADLILEKQPAYVKELE
RVTALQANLQLAAVICTNARRQLSVSKEEFTEASLGLLANQRRRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKNFDVSHYTKVQLAYTLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITMDSYIPCLTDLCKALWEVMVSYHRTMQWHEEHDKQDTSHTPGD
AAAAESDESVVDRSYVKKKLEHGLTRIWQDVQLKVKAYISGTDMSNFKYDDFIVVLDVIS
RLMQVGEEFCSSKSEVLQESIKRQSVNYFKNYHRARLEELRMFLENETWELCPVKSNFNI
SQLHEFKFMGQCRSPSVSPSRQAVSSSSPAQDELSLFQQFLQEGNPFELPTEKEEETEDV
LASNGYESDELEKNVYQDYDSDSDVPEELKQDYVDEQTGDAPLKSASRETIRSKKKSDYN
LNKANAPILTNTTLNVIRLVGKYMQMMSILKPIAFDVIHCVSQLFDYYLYAVYTFFGRND
MYESSGLGLISSRLRTTLNRIQENLIDMEALGETSGVHGAAEDRKEKVPSPHLSQMVVLT
NSGTLYGLAQRVVATESLVFLAEQFESLQFHLDTMMPAAKKPFLQQFYSQTVSTASELRK
PIYWIVAAKAIDYEQMLLLMAGVKWDIREIMSQHNVYVDVLLKEFEQFNKRLEDVSRHVR
IPLPVSNVLWEHCIRLANRTLVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDLRPIP
DKEFVETYIKAYYLTENDMEQFIKNHREYSMKQLANLVNVCLGSHINKKARQKLLAAIDD
IDRPKR
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtctctcatggcccgacagggcctgaaaagtccccaggaaagcata
gcagacctgagtcctgttgagaacctgaggatccctagcaaggaggagttgcgggagctg
agggagcagcccatcgacccccaggcggagcaggagatgatcgacagcatcgaggagctg
tactattcaaacgactccttcgacatggtgcagcacgaactggagaaactaccccctgag
ctaaacctgcaggagctggaggagtacagagacaagctgaagaaacaacaggcatcagta
tctaaaaaggttgccgatctcattctggagaaacagcctgcttatgtcaaggaactggag
cgagtgacagcgttgcaggccaacctgcagctggcagcggtcatttgcacgaatgcaaga
aggcaactgagcgtgtcgaaggaagaattcacagaagccagcttgggtcttttagccaat
cagaggaggcggcagctgctgacaggcctgctgaagtcactgaggaccatcaagacgctg
caaagaacagatgtgagactcagcgagatgcttgaggaggaagactatccaggtgcgatc
cagctctgtctggaatgtcaaaaggctgccagcaccttcaaacactacagctgcatcagt
gaattgaattccaaactacaagacactctggagcaaatagaggagcagcttgatgtcgcc
ctgtcgaagacttgtaagaactttgatgtttcgcactacaccaaggtccagctggcctac
actctcctgggaaagacacagactgctatggaccagctgcacatgcacttcacccaggcc
atccacaacacagtgttccaggtggtgctgggatacgtggagctgtgtgctggcaacgct
gataccaagttccagaagatgcagtataaagacctttgcacgcacatcaccatggacagc
tacattccctgcctgacggatctctgcaaggcattgtgggaggtgatggtgagctaccac
cgcaccatgcagtggcacgaggagcatgacaaacaggacacctcacacactccaggtgac
gcagcagcagcagagtctgatgagtcggtggtggaccgcagctatgtcaagaagaagttg
gagcatggactgacacgcatctggcaggacgtccagttgaaagtgaaggcctatatctcg
gggacagacatgtctaactttaaatacgatgatttcatcgtggtacttgatgtcatcagc
aggttgatgcaggtgggggaggagttctgcagcagtaagtcagaggtcctgcaggagtcc
atcaaacgccagagtgtcaactactttaaaaactatcacagggcacgactggaagagctg
aggatgtttctggaaaatgagacgtgggaactttgcccagtcaagtccaactttaacatc
tcccagctccatgagtttaagttcatgggccagtgtcgttctccgtccgtttccccgagc
agacaggccgtttcctccagcagcccggctcaggacgagctgtccctgtttcagcagttt
cttcaggagggaaacccctttgagctgcctactgaaaaagaggaggagacagaggacgtg
ctggcatccaacgggtacgagtcagacgagttggagaagaatgtgtatcaagactacgac
agcgacagtgatgtccctgaggagctcaagcaagactacgttgacgagcagacgggcgat
gcccccctcaaaagtgcgtccagagagaccataagaagcaagaaaaagtctgactacaac
cttaataaggccaacgcgccgatcctcacaaacaccaccctcaacgtcatccggcttgtc
gggaagtatatgcagatgatgagcattctgaagccgatcgccttcgatgtcatccactgt
gtgtcgcagctctttgactactacctgtatgccgtttacaccttcttcggacggaatgac
atgtatgagtcatcgggtctgggccttatcagcagcagactgagaaccacactgaaccgg
atccaggagaacctcattgacatggaggcattgggggagacttcaggagtccatggagca
gcggaggacaggaaggagaaggtgcccagcccccacctcagccaaatggtggtcctcacc
aacagtgggactctttatgggctcgcacagagagtggtggccactgaatctctggtgttt
ctggctgaacagtttgaatcccttcagttccacctggacacgatgatgccggcagccaag
aagcccttcctgcaacagttttactcccagacggtttctacagccagtgaacttcggaaa
ccaatttactggattgttgcggctaaggccatcgactatgaacaaatgttgctcctgatg
gctggagttaaatgggacattagggagataatgtcccagcataatgtatacgtggacgtc
ctgttgaaggagttcgagcagtttaacaaacgtctggaggatgtttccagacatgtacgc
atccccctgcctgtgtccaacgtcctgtgggagcactgcattcgcctggccaacaggact
ctagtagagggctatgctaacgtgaagaaatgcagcaatgagggccgggccctgatgcag
ctcgacttccagcagttcctcatgaagctggagaagctgaccgacctgcgacccatccct
gataaagagtttgtcgaaacctacatcaaggcttactacctgacggagaacgacatggag
cagtttatcaagaaccacagggagtactccatgaagcagctggccaacttggtgaacgtt
tgtctgggttcacacattaacaagaaggctcgtcagaaactgctggccgccatcgatgac
attgacagacccaagagatag
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