Trematomus bernacchii (emerald rockcod): 117478196
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Entry
117478196 CDS
T09643
Symbol
prdm1b
Name
(RefSeq) PR domain zinc finger protein 1 isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117478196 (prdm1b)
Transcription factors [BR:
tben03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
117478196 (prdm1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
zf-C2H2_6
C2CH-3rd_BIRD-IDD
STL11_N
zf-C2H2_jaz
Zf-C2H2_ZNF451_C
zf-met
zf-C2H2_11
zf-C2HE
B129_C2H2-zf
Motif
Other DBs
NCBI-GeneID:
117478196
NCBI-ProteinID:
XP_033981028
LinkDB
All DBs
Position
Unknown
AA seq
679 aa
AA seq
DB search
MTSIPRNLTFEYSTDNEVMGVFSKEYIPQGTRFGPLQGVIYTKDNVPKQANRKYFWRIYS
GGQLQSFVDGYDVNRSNWMRYVNPAHPSPEQNLVACQNGRDIYFYTIRPVEPNQELLVWY
SQEFAQRLCGQHEDIKKKYMSSDEDHESEYTKQHLPHKTWLTERTKGEVKEEREEDEEEK
IDVEILERDTPPVTPYDQIMDFSKKVEKEECDRESEDQGIIPSPEPQHREPILGLNRPFL
PDPQHALPSQHRSLPLHLHGIYREGVSSYPLYPQTRPLQPNYQLLPPYSPHYPRHLLLPL
YSPPFPGMMPSRGSLRYSSYPGTDGLPYPPVGPPNQLPVSIPYPMSSQGGLKELKPNISP
PRGAPATPELSPLPKPDSQHQCNEQSSSGCDEAMNLSLDTVKSEPSIRNSHGHKSLPYPL
HKQNGKIKYECNICSKTFGQLSNLKVHLRVHSGERPFQCYLCKKSFTQLAHLQKHHLVHT
GEKPHECQVCHKRFSSTSNLKTHLRLHSGERPYQCKLCGTKFTQYIHLKLHRRLHSSRDR
PYRCQLCAQAFFHRFSLRIHQCSCCMANSSAPVNVHMKQMVEQFDASQEADMLTEAASAR
QVEEAVEHWLARTLEGEGKEDQKEATVLLKALTAAINAPAMPIAKSPIATSHHSPPLAYQ
ERASVVHLHQWPTVKAEGQ
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgacctccatcccacgcaacctcaccttcgagtacagcacagacaatgaggtaatgggc
gtgttcagcaaagaatacattccccaggggactcgctttggccctctgcaaggagtcatc
tacaccaaagacaatgttccaaaacaggccaacaggaaatacttctggaggatttacagc
ggtgggcagcttcaaagctttgttgatggctatgacgtcaacaggagcaactggatgcgt
tacgtcaacccggcccacccttcgccggaacaaaacctggtggcatgccaaaacggcaga
gacatctacttctacaccatccggccggtggagcccaatcaggagctgctggtgtggtac
agccaggagtttgcccagaggctctgcggccagcatgaagacatcaaaaaaaaatacatg
agttctgatgaagaccatgagtcggagtataccaaacagcacctacctcacaagacatgg
ctcacagaaagaacaaagggagaagtgaaagaagagagggaagaagatgaagaggagaag
attgacgtggagattttggagagagacactccgccagtaacgccttacgaccagatcatg
gacttcagcaaaaaggttgagaaggaggagtgtgacagagaatcagaagaccaggggatc
attccctcccccgagccccaacacagagagcctatcctgggcttaaatcgcccgttctta
ccagatccccaacatgcgctgccatctcagcacagaagtctccctctacacctccatggc
atctacagggaaggtgtttcatcttaccccctttaccctcaaaccagacccctccaaccc
aattaccagctccttcctccctacagcccacactatcctcgccacctcctcctccccttg
tactcacctcccttccctgggatgatgccctcaagaggatcccttcgatacagcagctat
ccgggcacagacggactcccctacccacctgtcggcccacctaatcagctgccagtgtcc
atcccgtaccctatgtcttcacaggggggtctgaaagaactcaaaccaaatatatctccc
ccaaggggcgccccagccaccccagagctttcccctctcccaaagcccgacagtcagcat
cagtgtaatgagcagtcctcctctggctgcgacgaagccatgaatctaagcctggacacg
gtgaaaagcgaaccatcgatacgcaacagccatggccataaatcgctgccctaccccctt
cacaagcagaatggaaagatcaaatatgaatgcaatatctgctcaaagacttttggacag
ctgtcgaatctcaaggtccatcttcgagtgcacagtggtgagagaccgttccagtgttac
ctatgtaaaaagagcttcactcagctagcccacctccagaaacaccacctggtccacacg
ggggagaagccacatgaatgtcaggtgtgtcacaaacgcttcagcagcaccagcaacttg
aaaacacacctgcgcctccactctggtgaaaggccataccagtgcaagctgtgcggcacc
aagttcacccagtacatccacctcaaactgcaccgtcgcctccacagcagccgcgaccgg
ccctaccgctgccagctctgcgcccaggccttcttccaccgcttctccctacgcatccac
cagtgcagctgctgcatggccaactccagcgcacccgtcaatgtccacatgaagcagatg
gtggagcagtttgacgccagccaagaggcggacatgctcacagaggcggcgtcggcaagg
caggtggaggaagcggtggagcactggttggctcgtaccttggaaggtgaagggaaagag
gaccagaaggaagccaccgtactgctgaaagctctgacggcggcaatcaatgctccagca
atgcccatcgccaaatcgcccatagctacgtcacaccactctcctccactggcctatcag
gagagggccagtgttgttcatctccaccaatggccaacagtgaaggcagaaggacagtga
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