Trematomus bernacchii (emerald rockcod): 117478535
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Entry
117478535 CDS
T09643
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tben01009
]
117478535 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117478535 (hdac6)
04131 Membrane trafficking [BR:
tben04131
]
117478535 (hdac6)
03036 Chromosome and associated proteins [BR:
tben03036
]
117478535 (hdac6)
Enzymes [BR:
tben01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
117478535 (hdac6)
Protein phosphatases and associated proteins [BR:
tben01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117478535 (hdac6)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
117478535 (hdac6)
Membrane trafficking [BR:
tben04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
117478535 (hdac6)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
117478535 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
117478535
NCBI-ProteinID:
XP_033981412
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MQSGSGSPGSGKKSVRRSPRLSPQCTSSSSKEKEEGKGGSSLQEAKRRGKMERSRDEDEE
ELNDKLQTLDLSSQSAARGTGLVYSEIFTHHKNLWDSSHPECPDRVTSIMEELQRQELLS
HCVTVEPREAAEEELLLSHTKQYVDLMRSTQTMTESELQTLSEKYDSVYIHPESFQVCVK
GVGSVLQLVDQVMTSELRNGFAVVRPPGHHAQSDMSNGFCIFNNVAIAARYAQTRHSVRR
VLIVDWDVHHGQGIQYQFKDDPSVLYFSVHRYEEGSFWPHLSESDSQFVGSGRAEGRNIN
LPWNKTGMTDADYIAAFQQLLLPVAYEFQPQLVLVSAGFDAAVGDEKGGMCVNPQCFHVL
THMLMSLAEGRLVLALEGGYDLQSTAEGAAACVRALLGGACPFLTPPYAPSDSALQSISQ
TVSALYPHWASLQTLEGSRLAEGHVIRATANEKSTKHTDPPPSVARTTGLVYDEKMMEHL
NLWDRHHPEQPQRIFKIFSKHQQLGLVGRCKRIPVRLATEEELSTCHSVQHIEQMKATAE
MKPRDLHKLGLEFNSIFINNQSYQCALLAAGGCFSAVERILSGEVSNGVAIVRPPGHHAE
KDSPCGFCFFNTAAVTARHAQKISHDAPLRVLILDWDVHHGNGTQHMFEDDDSVLYISLH
RYDNGSFFPSSLDAAPDRVGVSKGAGFNVNVAWSGGRMGDSDYLAAFHSVIMPIATEFNP
GLVLVSAGFDAARGDPLGGYNMTPEGYAHLTHLLMSLAGGRVLHILEGGYNLSSISDSMA
MCTSVLLGDPPPSLATPLPPPHHNAVATINEVIRHHAPYWKSLRIRIPESVRVSLPSPKH
RGKRIFKGKGKKSEQGSTNKPPLPPSESEKTTSNQTECGLEQLTQGLAGLDISQTSANHT
PAKSTEVGGARPKVRQSPEKVESSAVTPENSQSADSTQPQDVAVAAPESVAPGDKPASEA
GAGPEEDGACGWSKPQTSLELTCGGQANTPLYVVDPLSWCPHLDVVKPLPPAGIDIFQSC
KDCGSEAENWICLTCYQVFCGRYVNEHMVTHGVVSEHPMVLSFCDLSVWCYLCEAYVHNQ
ILFEAKNSAHCAKFGEEIPPWS
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgcagtctggttcaggttctccgggatctgggaagaagtcagtcagaagatccccccgt
ctgtctcctcagtgcaccagcagcagcagtaaagaaaaggaggaggggaaaggaggaagc
agtctgcaggaggcgaagaggagaggaaagatggagaggagcagagatgaagacgaggag
gagctgaacgacaaactgcagacactggatctgtccagccaatcagcagccagaggaaca
ggtctggtttactctgagatcttcactcatcataagaacctgtgggactccagtcatcca
gaatgtcccgacagagtgacgtccatcatggaggagctgcagagacaggagctgctgtct
cactgcgtcacggtggagcccagagaagctgcagaagaagagctgctgctctctcacacg
aaacaatatgtggatttgatgaggtcgacgcagacgatgacagaaagtgaacttcaaact
ctgtcagagaaatacgactcggtgtacattcatcctgagtctttccaggtgtgtgtgaag
ggggtgggttcagtcctgcagctggtcgatcaggtgatgacctctgaactcaggaacgga
tttgccgtcgtcagacctccaggtcaccacgctcagtctgacatgtccaacggtttctgc
atcttcaacaacgtggcgatcgcagcacgatacgctcagaccagacactcagtccgcagg
gtgttgatagtggactgggatgttcatcacggtcagggtatccagtaccagttcaaggac
gaccccagtgtcctgtacttcagtgtgcacaggtatgaggaggggtctttctggcctcac
ctgtcggagtctgacagtcagtttgtcggcagcggacgagctgaaggcagaaacatcaac
ctgccctggaacaagacggggatgacagacgctgattacatcgcagcttttcaacaactg
ctgctgcccgtagcctacgagtttcagcctcagctggtcctggtctctgctggatttgat
gctgccgtcggagatgagaagggcgggatgtgtgtgaatcctcagtgtttccacgttctg
actcacatgctgatgagtttggcagaaggtcgacttgttctcgctctcgaggggggttat
gacctgcagtcgacagcagagggcgctgcagcgtgtgtcagagctctgctgggaggagcc
tgccctttcctgactccgccctatgctccgtctgacagtgctctgcagtccatctctcag
acggtctcagctctgtatccccactgggcctcactgcaaacactcgaaggcagccgattg
gctgaggggcatgtcatcagagcaacagccaatgagaaaagcacaaagcacactgacccg
cctccctctgttgccaggacaacaggtctggtttatgatgagaagatgatggagcacctg
aacctgtgggacagacatcaccctgaacagcctcagaggatctttaaaatcttctccaaa
catcagcagctgggattggttggtcgttgcaaacggataccagttcgcctagcaacagag
gaggagctctccacctgtcacagtgtgcagcacatcgagcagatgaaggccacagcagag
atgaagcccagagatctgcacaaactgggtctggagtttaactccatcttcatcaacaac
cagagctaccagtgcgctctgctggctgcaggaggctgcttcagcgctgtggagaggatc
ctctcaggagaggtgagtaacggcgtggcgatcgtccgtcctcccggtcatcacgcagag
aaagactctccgtgtggtttctgtttcttcaacacggcagccgtcacagctcgccacgca
cagaaaatatcccatgatgcaccgctgcgagtcctcatcctggactgggacgttcaccac
ggcaacgggacgcagcatatgttcgaggacgacgacagcgtcctgtacatctcgctccat
cgctatgacaacggatcgttcttcccgtcctcattggacgccgccccggacagggtgggc
gtgtctaaaggggcggggtttaacgtcaacgtggcgtggagcggcgggcggatgggcgac
tccgactacctcgctgcctttcacagcgtcatcatgccgatcgccaccgagtttaacccc
ggtctggttctggtgtcggccgggttcgatgccgctcgaggggatccactgggggggtac
aatatgacgccggagggatacgcccacctgactcacctgctgatgtcactggctgggggg
cgggtcctacatatactggagggaggttataacctgtcatccatctctgactccatggcg
atgtgcacaagcgtgttgctaggagaccctcctccctctttggcgacgcccctcccccct
cctcatcacaacgccgtggcaacgatcaacgaggtcatccgacaccacgccccctactgg
aagtcgctacggatacgcatcccagagtctgtccgggtgtctctgccttccccaaagcat
cgtgggaaacgtatttttaaaggaaaaggcaagaagtcagagcaaggcagcacaaacaaa
ccccctctgcccccttcagaatcggagaaaacaacgtccaatcagacggagtgtggtctg
gagcagctcacgcagggattggccggtttggatatcagtcaaacttcagccaatcacact
cctgctaaatccacagaagtgggcggggccaggccgaaggtacgccaaagcccggagaag
gtggagtcatctgcagtgacacctgagaacagccaatcagctgacagtacacaacctcag
gatgttgccgtggcagctccagagtcagttgcccctggagacaagcctgccagtgaagca
ggggcgggaccggaggaggacggagcgtgtggctggtcgaagcctcagacctctctggag
ctgacgtgtggaggacaggcgaatacccctctctacgtggtggaccctctctcctggtgt
cctcacctggacgtcgttaagcccctccccccggcaggtatcgacatcttccagtcgtgt
aaggactgtggctccgaggctgagaactggatctgtctcacctgctaccaggtgttctgc
ggtcgttatgttaacgagcacatggtgactcacggcgttgtgtctgaacacccgatggtg
ctgagcttctgtgacctgtctgtgtggtgctacctgtgtgaggcctacgtgcacaaccag
attctgtttgaagctaagaactcagcgcactgcgccaaatttggagaggagattcctcca
tggagctga
DBGET
integrated database retrieval system
