Trematomus bernacchii (emerald rockcod): 117478856
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Entry
117478856 CDS
T09643
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117478856 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117478856 (mtrex)
03041 Spliceosome [BR:
tben03041
]
117478856 (mtrex)
03009 Ribosome biogenesis [BR:
tben03009
]
117478856 (mtrex)
03016 Transfer RNA biogenesis [BR:
tben03016
]
117478856 (mtrex)
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117478856 (mtrex)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
117478856 (mtrex)
Spliceosome [BR:
tben03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117478856 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
117478856 (mtrex)
Ribosome biogenesis [BR:
tben03009
]
Eukaryotic type
Pre-60S particles
Helicases
117478856 (mtrex)
Transfer RNA biogenesis [BR:
tben03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
117478856 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
117478856
NCBI-ProteinID:
XP_033981664
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MADAFGDGLFSVFDDEQQTTTSKKIPASLTAEIGKVITKNGADKDAASPAVKREADSDGG
EEVLFGKKARHEAICANDLNLAEFMPQVKVEQVETVEGCCHEVALQANEEYKPLKPRVGK
AAKEYPFVLDPFQREALLCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPI
KALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVF
DEIHYMRDLERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTEY
RPTPLQHYIFPSGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGGSGGGKWDPRRKGG
TRGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDEEKRLVEEVFSNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSPSI
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKIEK
YEAQYNSIEIPNEEGVVTYFKIRQQLAKLGKEIQEFTHKPKYCLPFLQPGRLVKVKNDVS
DFGWGVVVNFCKKSNVKSSTDSEPLYVVEVLVHCSKDSVKDAATEAAKPAAPGETGEMQV
VPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPVDDMGIKDP
ALKKVIQKVEAFEHRMYSHPLHSDPNLEAVYSLCEKKAVIAADVRTAKRELKKARTVLQM
DKLKCRKRVLRRLGFASPSDVIEMKGRVACEISSGDELLLTEMVFNGLFNDLTVEQSTAL
LSCFVFQENASEMPKLTETLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHLMD
VVFAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcttttggagacggtttgttcagcgtgtttgacgatgaacaacaaactacc
acaagcaaaaagatacccgcttctctgactgcagaaatcgggaaagttattactaaaaat
ggcgctgataaagatgctgcttctcctgccgtcaagagggaggccgacagtgacggagga
gaggaggttctgttcgggaagaaagctcgacacgaggccatctgtgctaacgacctgaat
cttgcagaattcatgccccaagtgaaggtggagcaggtggagactgtggagggatgctgt
catgaggtcgcactgcaagccaacgaagaatacaaaccactgaagccgcgagtggggaaa
gcagccaaggagtacccttttgttctggatccgttccagcgcgaggccctcctgtgcatc
gacaacaaccagtctgtgctggtgtcggctcacacctcggctggaaagaccgtctgtgct
gaatacgccattgccctggcgctcagagagaaacagagggtgatcttcaccagccccatc
aaagctctctctaaccagaaatacagagaaatgtacgaggagttccaggatgttggtctg
atgacgggagacgtcaccatcaaccccaccgcctcctgcctcgtcatgaccacagagatc
ctgaggagcatgctgtaccgaggctctgagatcatgagggaagttgcctgggtcgttttt
gatgagatccactacatgagagacttagagcgtggtgttgtctgggaggaaaccatcatt
cttcttcctgataacgtgcattacgtcttcttgtcggccaccatccccaacgccaagcag
tttgcagagtggatttgccaccttcacaagcagccatgccatgtcgtgtacactgagtac
cgtcccactcctctgcagcactacatcttcccatcagggggcgacggactccacctcgtt
gttgatgagaacggagacttcagagaggataacttcaacacggccatgcaggtgctgaga
gacgccggggattctgggggaagtggaggaggaaagtgggacccgagacggaaaggaggc
accagaggtccgtccagcgtttttaaaatcgtgaagatgatcatggagaggaacttccag
cctgtcatcatcttcagtttcagcaaaaaggagtgcgaggcgtacgctctgcaggtggcc
aagctcgactttaacacagatgaagagaagcgtctggtggaggaagtgttcagcaatgcc
attgattgtctgtcggacgaggataagaaactccctcaggtggagcatgtgcttcctctg
ttgaagagaggcataggaatccatcatggaggcctgctgcccatcctgaaggagaccata
gagatcctgttctctgaaggactcatcaaggctctttttgctacagagacgttcgccatg
ggcatcaacatgccggctcgcaccgtcctcttcaccagcgcccgaaaatttgacggcaag
aaccaccgctttatcacatcaggcgagtacatccagatgtctgggcgagccggcaggaga
ggaatggacgaccgaggaatcgttatcttcatggtggacgagaagatgagtccatcgatc
ggcaaacagctgctcaagggctccgcagaccctctaaactctgccttccacctgacttac
aacatggtgctgaatctgctgcgagtcgaggaaataaaccctgaatacatgctggagaaa
tctttctaccagttccagcattacagagccctgcctggcgtcgtggagaagatcgagaag
tacgaggcgcagtacaacagcatcgagatccccaacgaggagggcgtggtgacgtacttt
aagatccgacagcagctcgccaagctggggaaagagatccaggagttcactcacaaaccc
aaatactgcttacccttcctgcagcccggcagactggtcaaggtgaaaaatgatgtctct
gactttggctggggagtggtggtgaacttttgcaagaagtcgaatgtgaagtccagcacg
gactctgagcctctgtacgtggtggaggttctggttcactgcagcaaggacagcgtgaag
gatgctgccactgaggcggctaaacctgcagctccaggagagaccggggagatgcaggtg
gtcccagtgatgctgcatctcctgacctccatcagctccgtccgtctctacatccccaaa
gatctgaggccctttgacaaccggcagctgatgctcaagtccatacaggaggtgcagaag
cgtttcccggacggcgttcctctgctggatcccgtggacgacatgggcatcaaagacccg
gcgctgaagaaggtgatccagaaggtcgaggccttcgagcaccgcatgtactcccaccct
ctgcacagcgaccccaacctggaggccgtgtactcgctctgtgagaagaaagctgtgatc
gcagcagatgtccgtacggctaagagagagctgaagaaggcgcgcaccgtgctgcagatg
gacaaactgaagtgcaggaagagagtcctgcgacgcctcggattcgccagtccgtccgac
gtcatcgagatgaaaggacgcgtcgcctgtgagatcagcagcggtgacgagctgctgctg
acggagatggtgtttaacggccttttcaacgacctgacggtggaacaatccacggctctg
ctgtcctgcttcgtcttccaggagaacgccagtgagatgccgaaactgactgaaacacta
gcagctcctctgagacaaatgcaggagtgtgcaaagcgcatagcgaaggtttctgcggac
gccaagctggaagtggacgaggagacgtacctgaaccagttcaagcctcacctgatggac
gtggtgttcgcctgggccaacggggccaccttcgctcagatctgcaagatgaccgacgtc
ttcgaagggagcatcatccgctgcatgcgtcgtctggaggaagtcctgagacagatgtgt
tcggctgccaaggccatcggaaacacggagctggagaacaagttcgctgaaggaataacg
aagatcaagagggacattgtgttcgctgccagtctctacctttaa
DBGET
integrated database retrieval system
