Trematomus bernacchii (emerald rockcod): 117478877
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Entry
117478877 CDS
T09643
Name
(RefSeq) LOW QUALITY PROTEIN: WD repeat-containing protein 7
KO
K24738
rabconnectin-3b
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
117478877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117478877
Membrane trafficking [BR:
tben04131
]
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
117478877
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40_WDHD1_1st
WD40
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_TEP1_2nd
WDR55
EIF3I
ANAPC4_WD40
Beta-prop_SCAP
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Beta-prop_DCAF12
WDR72_alpha-sol
KNTC1_N
Beta-prop_Vps41
Beta-prop_RSE1_2nd
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
117478877
NCBI-ProteinID:
XP_033981699
LinkDB
All DBs
Position
Unknown
AA seq
1448 aa
AA seq
DB search
MSGNNLVLPIVLWGRTAPTHCISSLLVMDNFSTIITGCHDGQICIWDMTPELEICPRAML
FGHTASITCLAKASACSDKQYIVSASENGEMCLWDVNDGRCIEFTKLACAHTGIQFYQFT
ISTEKEGRLLCNGHYPEILVVDATSLEVLYSLVSKISPDWISSMSIIRSHRTQEDTVVAV
SVTGILKVWIITAEVSKIQDLDPVFEEESKPIYCQGCQSISFCTFTQSSLLVVCSKYWRV
FDAVDYSLLCSVSSENDQAWTGGEFIAADRVIIWTEDGCSYIYKLPASCLPASEHYRSDV
GKTKEGSIPPLVYSIADRLDKQLLICPPVTRFFFGRREPFHKLLIQGDSAGRLSLWSVPD
NSPLQPLSTAAELQVSSTISLQESFDKLSPVSSGIIDQLSALPGQDAPIKVTASVYIPSQ
GRLVCGREDGSIILVPATQTAIVQLLQGEHMLRRGWPPHRTLRGHRNKVTCVLYPHQISP
RYDQRSLVSGGVDFSVIVWDIFTGEMKHIFCVHGGEITQLIVPPENCSTRVQHCVCSVAS
DHSVGLLSLRERKCIMLASRHLFPIQVIKWRPADDYLVVGCSDGSVYVWQMDTGALDRCV
MGITAIEILSACDELAPATVDALSHSAVNLKQAMTRRSLAALKNMATHKLQTLATNLLAA
DNADKGNLPKYSHNALVVQAMKTNLTDPDMHVLFFDVEAVIIQLLTEEAQRPSPILVSPE
TLQKSQAGADKGGSFLANKIFKQVKETMKETIKEHLLDEDEEEEEEMRRREEKSKSLSLL
EYNLTMDTAKLFMSCLHAWGLNEKLDGICLERLGMLRPHCPISFGLISRGGHMSLMLPTF
KESLLRQLSLATGLKLTLTDIVGKGTYGVSRAVTTQHLLSVISLANTLMGMTNATFVGEH
MKKAPVRPPRPGGTPETPRRTLTAPPQPSNPALQAQIKQGWSQLAAMHCVMLPDLLGLDK
FRPPLLEMLARRWQDRCLEVREAAQALLLAELRRIGQSGRKDTIDLWAPYLPQYVDTVSS
PGSTTEPSPPAPPPPEAQPIEAKVPEEEMDVTDDDIIAGCLSNLPPNAKKISNSYEERRK
QATAIVLLGVIGAEFGAEIEPPKGXARARTGGQAPEGFGLTSGGSSNYSLARHTCSSLTV
LVPPPSPKLPPHSTIRRTAIDLIGRGFTVWEPYMDVSAVLMGLLELCADADKQLTNVTMG
LPLNPPADSARSSRHALSLIATARPPAFITTIAREVHRFNAAQANSQSQQNVHTTTLARA
KTEILRVIEILIEKMPGDVVDLLVEVMDIIMYCIEGSLVKKKGLQECFPAICKFYMVGYC
DRSHRIAVGARQGSVALYDVRTGKCQNIHGHKGPITSVSFAPDGRYLATYSNADSHISFW
QMNTSLLGSIGMLNSAPQLRCIKTYQVPPVQPASPGSQNHLKLARLIWTSNRNVILMAHD
GKEHRFMV
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggaacaacctggttctacccatagtgctatggggccgcaccgctcccacccac
tgcatcagcagcctgctggtgatggacaacttcagcaccatcatcaccggctgccacgac
ggacagatctgcatctgggacatgacgcctgagctggagatttgtccccgggccatgctg
tttggtcacacagcctccatcacctgtctggctaaagccagtgcatgcagtgacaaacag
tacatcgtcagcgcatcagagaacggagagatgtgtctatgggatgtgaacgatggacgc
tgtattgagttcaccaagctggcctgtgctcacactggcatacagttctatcagttcacc
atcagcactgagaaagagggacgtctgctttgcaacggccactacccagaaatccttgtg
gtggacgccaccagcctggaggtgctgtactctctggtgtccaagatctcccccgactgg
atcagctccatgagcatcatccgctcccaccgcacacaagaggacacggtggtggcggtg
tcagtgacggggattttgaaggtttggatcatcacagcggaggtcagcaagatccaggac
ctggaccctgtgtttgaagaagagtccaaacccatctactgtcagggctgtcagagcatc
tccttctgcaccttcactcagagcagcctgctggtcgtctgctccaagtactggagggtg
ttcgatgccgttgactactcgctcctctgctcagtgtccagtgagaacgaccaggcctgg
accggaggagagttcatcgccgcggacagagtcatcatctggacggaggacggctgcagc
tacatctacaagctgcccgccagctgtctgcctgcgagtgaacattaccgcagtgatgtg
gggaaaactaaagaaggctccatccctccgctggtctacagcatcgccgaccgcctagac
aaacagctcctgatctgtcctccggtcactcggttcttcttcggccgacgggagcccttc
cacaagctgctgatccagggggactcagcgggccgactgtccctgtggagcgtccccgac
aactcgcctctgcagccgctgtcgaccgccgcagagctgcaggtgtcgtccaccatcagt
ctccaggagtcgtttgataagttgtcccccgtgtcttcagggatcatcgaccagctcagc
gccctgcctggacaagacgcacccatcaaggtgacggccagcgtctacatcccctctcag
ggccgcctggtgtgcggcagagaagacggcagcatcatcctggttcctgccacacagacc
gccatcgtccagctgctgcagggcgagcacatgctgcggagaggctggccgccccaccgc
accctgcgaggacaccggaacaaggtgacgtgcgtcctgtacccgcaccagatctcccct
cgctacgaccagcgctccctggtgtccggaggagtggacttctccgtcatcgtctgggac
atcttcaccggagagatgaagcacatcttctgcgtccacggaggagagatcacgcagctc
atcgtcccgccggagaactgcagcactcgggtgcagcactgcgtctgctcggtggccagc
gatcactcagtgggtctgctcagtctgagggagaggaagtgcatcatgctggcgtccaga
cacctcttccccatccaggtcatcaagtggcgtccggcagacgactacctggtggtgggc
tgctccgacggctccgtctacgtctggcagatggacacaggcgcgttggaccgctgtgtg
atggggatcacggcgatagagatcctgagcgcctgcgacgagctggccccggccaccgtg
gacgctctgagccactctgcggtgaacctgaagcaggccatgacccgccgcagcctggcc
gcgctgaagaacatggccacgcacaaactgcagacgctcgccaccaacctgctggctgca
gacaacgccgacaagggcaacctgccgaaatactcccacaatgccctggtggtgcaggcg
atgaagaccaacctgacggaccccgacatgcacgtgctgttcttcgacgtggaggcggtg
atcatccagctgctgacggaggaggcgcagagacccagccccatcctggtgtctccagag
acgctgcagaagagccaggccggggccgacaagggggggtccttcctggccaacaagatc
ttcaaacaggtgaaggagacgatgaaggagaccatcaaggagcacctgctggacgaagac
gaggaggaagaggaggagatgaggaggcgggaggagaagtccaagtctctcagcctgctg
gagtacaacctgacgatggacacggccaaactgttcatgtcctgcctgcacgcctggggt
ctgaacgagaagctggacggcatctgcctggagcggctgggcatgctcagaccgcactgc
cccatctccttcggcctgatctccagaggaggtcacatgtccctcatgctgcccaccttc
aaggagtccctgctgcgacagttgtccctggcgacgggtctgaagctgactctgacggac
atcgtggggaaggggacgtacggcgtgtcgagagccgtcaccacgcagcacctgctgtcc
gtcatctctctggccaacactctgatgggcatgaccaacgccacctttgtgggagaacac
atgaagaaagcccccgtcaggcctcccagaccaggaggaaccccggagactcctcgcagg
acgctgaccgccccccctcagccctccaacccggcgctacaggcccagatcaaacaaggt
tggagccagctagcagccatgcactgtgtgatgctccctgacctccttggactggacaag
ttcagacctcctctgctggagatgttggcgagaagatggcaggaccgctgtctggaggtg
cgtgaagcagctcaagctctcttactggctgagttgaggcggattggccaatcaggacgt
aaagacaccattgacttgtgggctccatacctgcctcagtacgtggacactgtcagctcc
cctggctccaccactgagccctcccctccggctccgcctcctcccgaggctcagccaata
gaagcaaaggttcctgaggaggaaatggacgtcacggatgacgacatcatagcaggctgt
ctctccaaccttccaccaaacgccaagaagatctccaactcatacgaagagcggcgtaaa
caagccaccgccatcgtgctgctgggggtcatcggggctgagtttggcgctgagattgaa
cctccgaaggggncagcgcgggctcggacgggggggcaggcgcctgagggcttcggactg
accagcggagggtcctccaactactctctggccagacacacatgttcatctcttacagtc
ttagtccccccccccagccccaagctgcccccccacagcaccatccgccgcaccgccatc
gatctgattggccgaggcttcaccgtgtgggagccttatatggacgtgtcggcggtgctc
atggggctcctggagctctgtgctgacgccgacaagcagctgaccaatgtcaccatgggg
ttgcctctcaaccctccagcagattcggctcgctcgtcccgccacgccctctctctcatc
gccactgcccgcccaccggccttcatcaccaccatcgccagagaggttcatcgcttcaac
gcagctcaggccaactctcagtcgcagcagaacgttcacaccaccactctggcccgagcc
aagactgagatactgcgagtcatcgagatcctgatcgagaagatgcccggagacgtggtg
gatctgctggtcgaggtgatggatatcatcatgtattgtattgaaggctctctggtgaag
aagaaaggactgcaggagtgtttccctgctatttgcaagttctacatggttggttactgt
gaccgcagtcaccgcatcgctgttggagctcgccagggatcagtggccctctacgatgtt
cgcaccggaaagtgccagaacatccacggtcacaaaggtcccatcacatcagtgtcgttc
gcccccgatggccgttacctagcaacgtactccaacgctgacagccacatctccttctgg
cagatgaacaccagtctgctgggcagcattgggatgttgaactcggcccctcagctccgc
tgcattaagacctaccaggttcctcctgtgcagccggcgtctccggggtctcagaaccac
ctgaagctggcccgcctcatctggacctccaaccgcaacgtcatcctgatggcgcacgac
ggcaaggagcaccgcttcatggtctga
DBGET
integrated database retrieval system
