Trematomus bernacchii (emerald rockcod): 117478878
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Entry
117478878 CDS
T09643
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tben03021
]
117478878 (chd1)
03036 Chromosome and associated proteins [BR:
tben03036
]
117478878 (chd1)
Transcription machinery [BR:
tben03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117478878 (chd1)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
117478878 (chd1)
SLIK complex
117478878 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
ResIII
CHDCT2
Motif
Other DBs
NCBI-GeneID:
117478878
NCBI-ProteinID:
XP_033981701
LinkDB
All DBs
Position
Unknown
AA seq
1874 aa
AA seq
DB search
MAGRSEEESVTNSGAESSNSDDESGSGSGSASGSASGSSSSSSSSSSQSGSSDSGSGSDS
GSGSDSDTEKTKEKIEAPNKSNIDGAEFWKSNPSILAVQRSAMLRKQQLQQQQQQQQQQQ
QQQQQQQQRQSSSGSDEDSSSSDGSDSSSGSKRRKNSGSSGSGSGSGSGSGSGSDSSAEE
KSEETASDYEPSLKIKSRKPPTKMNYRNGKKSTNQKKKKSTNHSSSDDEYKKAAAAGPRR
QATVNVSYKEDDDLKTDSDDLVEVLGEDVPAPEEDEFETLEKVMESRIGRKRATGSVTTV
YAIEADGDPNLNFNPNKEAGDIQYLIKWKNWAHIHNTWETEDTLKLQNVKGMKKLDNFKK
KDTEKKRWLKAASPEDVEYFNCQEELMDDLHSQYQIVERIIGELSTSLVVCIEYFPLNTF
LILFGFLQLNGSLTFYAAGHSNQKSAAGYPDYLCKWQGLPYSECSWEDGALIGRKFQKCI
DNYMSRNQSKNIPFRDCKVLKQRPRFLPMKKQPTYIGGEGLELRDYQLDSLNWMAHSWCK
SHSCILADEMGLGKTIQTISFLNYLFNDHQLYGPFLLVVPLSTLTCWQREIQLWAPLMNF
VVYLGDISSRNMIRTHEWMHPHNKRLKFNIILTTYEILLKDKSFLGAVSWAFIGVDEAHR
LKNDDSLLYKTMMDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFHAWEVFEEAHGKG
RDSGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYYKWILTRNYKALS
KGKGSTSGFLNVMMELKKCCNHCYLIKPPEDNEFLNRAEALQQLIRSSGKLVLLDKLLVR
LKDRGHRVLIFSQMVRMLDILAEYLKSRQFLFQRLDGSIKGEMRKQALDHFNAEGSEDFC
FLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVNIYRLVTKSSVE
EEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSAPFNKEELSSILKFGAEELFKE
PEGEEQEPQEMDIDEILKRAETRDNDPGPSTVAEELLSQFKVANFSMMDEEDLDMDSERS
QRSWDDIIPEEQRRRMEEEERQKELEEIYLLPRMRNCAKQSNFNASSGRQSRNRRYSGSD
SDSPSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFVKSYKKFGGPLERLDGIARDAELVD
KSESDLKRLAETVHNGCVRTLRENPSGPEKSSGGRRGKVKGPTFRISGVQVNAKLVISHE
EELAPLHKAIPDDPEERKKYMIPCHSKAAHFDIDWGKEDDSSLLIGIYEYGYGSWEMIKM
DPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQKQAGTANSRKRKPRN
KKSKTQKPIKTEEVLKSTSSDPPSDKRSDDEDEIEEEKEVTPVKAQSRRGRADRVVPKEE
EDEEEDEEDEDEEPEQEEVSSSGEMEIKKESKKEKKDDSWDIKETKEPKEKKETKPLEAV
YKEDNLDKNEVKTKKPGDVPVHITAGGETVPVSEESEELDQRTFSVCKERMRPVKAALKQ
LDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIFVSKFTEFDA
RKLHKLYKHAIKKRQENAQAMEQNTRNANTHGYKHTDIERLKDSSHQDESSRDSYSSDRH
PPSGRHHESSSKDRHSSEPHRKSSGGESRKRPYTSFSNGKDHRDGKDHRDGKDHRDGKDH
RDGKDHRDGKDHRDGKDHRDRDHYRPDSRDRDRDRDRDRPDRYYNDSKHRKLDEFRSRDR
LDVKDHSHSDHRSSYRYHSDWQAEQRASASVPPRSPRDQRSPYDSRSPMGHRSPFDYSSD
HKSTPEQIWSSRKT
NT seq
5625 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgcagtgaggaggaaagtgtaaccaacagcggtgcagaatcaagtaattct
gatgatgaatcgggttctgggtcgggctccgcgtcagggtctgcgtcagggtccagttcc
agctcctccagcagcagtagccaatcagggagcagtgactcaggaagtggatcagactct
ggcagtgggtcagattctgacacagagaaaaccaaggagaagatcgaagcgccaaataag
tcaaacatcgatggagctgagttctggaagtccaacccaagtatcctagcagtgcaaaga
tctgctatgctcaggaaacagcagcttcagcaacaacaacaacaacagcagcagcagcag
cagcaacagcagcaacagcagcagagacaaagctcctctggatctgatgaggactcgtca
agtagcgatggatctgactcatcaagtggatccaaaaggagaaaaaattcaggctcctct
ggatctggatcaggctctggatctgggagtggttctggatcagactcgtccgctgaggag
aagagtgaagaaacggcatcagactatgagcctagtctcaaaatcaaaagcagaaagccc
ccaaccaagatgaattatcggaatgggaagaaaagcaccaaccagaagaagaaaaagtcc
acgaatcattcttcttctgatgatgagtacaagaaggcggccgctgcggggccccggcgg
caggccacggtcaacgtcagctacaaggaggacgatgacctgaagaccgactccgacgac
ctggtggaagttctcggtgaagacgtcccggcgcctgaagaagacgagtttgagacattg
gagaaagtaatggagtccaggatagggaggaaaagagccacaggaagtgtcaccactgtg
tacgccatagaagccgacggggaccctaatctcaacttcaatcccaacaaagaggctggg
gacatccagtatctgataaagtggaagaactgggcgcatatccacaacacctgggagaca
gaggacacactcaagttacagaacgtcaagggcatgaagaaactggacaacttcaagaag
aaggatacggagaaaaagagatggttaaaagcggcatcaccggaggatgtagagtatttc
aattgtcaggaagaattaatggatgacctgcactctcagtaccagattgtggagcgaatc
ataggtgagctttctacatcacttgttgtttgtatagagtactttcctctgaataccttt
ttaatactatttggattcctgcaacttaacggctctctgactttctatgctgcaggacat
tcgaaccaaaagtcagcggcgggttacccagactatctgtgcaagtggcagggtttgcca
tattcggagtgcagctgggaggacggcgctctcatcggcaggaagttccagaaatgcatc
gacaactacatgagcagaaaccagtccaagaacattcctttcagagactgcaaggtgctc
aaacagagacccaggtttctgcctatgaagaagcagccgacgtacataggaggcgaagga
ctggagctccgagactaccagttggacagcttgaattggatggcccattcctggtgcaaa
agccacagttgcattcttgcggatgagatgggtttagggaagaccatccagacaatctcc
ttcctcaactacctgttcaacgatcaccagctgtacggacccttcctgttggtcgtgcct
ctctctacactcacctgctggcagagggaaatccagctttgggcccctctgatgaacttt
gtcgtctacctgggagacatcagcagcaggaacatgatcaggacacacgagtggatgcat
cctcataacaagagactaaagtttaacatcattctcacaacgtatgagattcttctcaaa
gacaagtcatttttgggcgctgttagctgggctttcattggtgtggatgaggcgcatcga
ctgaagaacgacgactccctcctgtacaagacgatgatggatttcaagtccaatcacagg
cttctgatcacaggaacgccgctgcagaactctctgaaggagctgtggtccctgctgcac
ttcatcatgccagagaagtttcacgcatgggaggtctttgaggaggcgcatggtaaaggc
agagactcgggatacgccagcctgcacaaagagctggaaccttttctcctgcgaagagtc
aagaaggacgtggagaaatctcttcctgccaaagtggagcagatcctcagagtggagatg
agtgctatccagaaacagtattacaaatggatcctcaccaggaactacaaggctctgagt
aaaggtaaaggcagcacgtcgggcttcctgaacgtcatgatggagctgaagaagtgttgt
aaccactgttaccttatcaagccgcccgaggacaacgagttcctcaacagagccgaggca
ttacagcaactgatccgcagcagtgggaagctggtgctgctggacaagctgctggtgcgt
ctgaaggatcgaggccaccgagtcctgatcttctcccagatggttcggatgctggatatc
ctggctgaatacctgaagagccgacagttcctctttcagcggttagatggctccatcaaa
ggggagatgaggaagcaggcgttggatcacttcaatgccgagggatcagaggatttctgc
ttcttgttatcaacgcgtgccggtggtctgggtatcaatctggcgtcggctgacacagtc
gtgatttttgactctgactggaacccccagaacgacctgcaggctcaggcccgagctcac
aggatcgggcagaagagacaggtgaatatctaccgtctggtgacaaaaagctcagtagag
gaggaaatcattgagagggcgaagaagaaaatggtgctggaccaccttgtgattcagagg
atggacacgacggggaaaactgtcctccatacgggatccgctccctccagttctgcaccg
ttcaacaaggaggagctgtcctccatcctgaagttcggagctgaggagctgttcaaagag
ccagagggcgaggagcaggagcctcaggaaatggacattgatgagatcctgaaaagagcc
gagaccagggataacgaccccggaccctccacagtggcagaggaactgctgtctcagttc
aaggtggccaacttctccatgatggatgaagaggatttagacatggactctgagcgcagt
cagaggagttgggacgacatcattcccgaggagcagaggaggaggatggaggaggaggag
aggcagaaggagctggaggaaatctacctgctgccccgcatgaggaattgtgccaaacag
tcgaactttaacgccagttcggggcggcagagcaggaacagacggtactcgggctccgac
agcgactccccgtcggaccggaagaggccaaagaagagggggcggcctcggactattcca
cgagaaaacatcaaggggttcagtgacgctgagatccggaggttcgtcaagagttacaag
aaattcggaggaccgctggaaaggttggatggtatcgctcgtgatgctgaactcgtggat
aagtccgaaagcgacctgaagcgtttggcagagacggttcacaacggctgtgtgagaact
ctgagagaaaacccctctggaccagagaagagttcaggaggcaggagagggaaggtaaag
ggcccgacattcaggatctctggagtccaggtgaatgcaaaactcgtcatctcgcatgag
gaagagctcgctccgcttcataaggccattcctgatgaccctgaggagaggaagaagtat
atgattccatgccattcgaaggcagcacactttgacattgattgggggaaggaggacgac
tccagtctcctgataggaatctacgagtacggttacggcagctgggagatgattaagatg
gatccggaccttaacctcacacacaagctcctacctgacgaccctgacaagaagccacaa
gcaaagcagctgcagaccagagcagactacctcatcaaattgctcagcaaggacctggcc
aagaaagaagcacagaagcaagccgggacagccaattcacggaagaggaaaccgagaaat
aagaagagcaaaactcagaagccaattaagaccgaagaggtgctgaagagcacgtcctcg
gaccccccatcggacaagaggtcggacgacgaggacgagatcgaggaggaaaaggaggtg
acaccggtgaaagctcagagcagacggggccgagcagaccgggtggtgccgaaggaggag
gaggacgaggaggaggacgaggaggatgaagacgaggagcctgagcaggaggaagtatcg
tcgtcgggggaaatggagatcaaaaaagaaagcaaaaaggagaagaaggacgacagttgg
gacattaaagaaaccaaggagccaaaggagaaaaaggagacgaagcctctggaggcggtg
tacaaagaggacaacctggacaagaacgaggtgaagactaagaaacccggtgatgtgccg
gtccacataacagcgggaggagaaaccgtgccggtgtcggaggagtctgaggagctggac
cagaggaccttcagtgtgtgtaaggagcggatgcggccggtgaaagcggcgctgaagcag
ctggaccgaccggagaaaggtctgtcggagcgagagcagctggaacacaccaggcagtgc
ctcatcaagatcggagaccacatcaccgagtgtctgaaggagtactccaaccccgagcag
atcaaacagtggagaaaaaacctgtggatatttgtttccaaattcacggagttcgatgcc
aggaaacttcataaactgtataaacatgcaatcaagaaaagacaagagaacgcccaggca
atggagcagaacacgagaaatgcaaacacccacggatacaaacacacagatatcgaacgg
ctgaaggacagctctcaccaggatgagagcagcagggacagctacagctcggacagacat
cctccatcaggacggcaccacgagagcagcagcaaggaccgacacagctccgagccgcac
aggaagtcctcgggaggggagagcaggaagagaccgtatacctccttcagcaacggcaaa
gaccacagagacggcaaagaccacagagacggcaaagaccacagagacggcaaagaccac
agagacggcaaagaccacagagacggaaaagaccacagagacggcaaagaccacagagac
agagaccactacagaccagacagcagggacagggacagggaccgagacagagacagaccg
gacagatactacaacgacagcaagcacaggaagctggacgagttccgctccagagaccgc
ctggacgtgaaggaccactcccactcggaccaccgctcctcctaccgataccactcggac
tggcaggcggagcagcgcgcctcggccagcgttcccccccgatccccccgggaccagcgc
tcgccctacgactcgcgctcgcccatgggacaccgctcgcccttcgactactcgtcagac
cacaagagcacaccggagcagatctggagcagccgcaagacataa
DBGET
integrated database retrieval system
