Trematomus bernacchii (emerald rockcod): 117478932
Help
Entry
117478932 CDS
T09643
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117478932
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117478932
Spliceosome [BR:
tben03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117478932
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
R3H
Helicase_C
DEAD
HA2_N
Ank_2
AAA_19
ATPase
AAA_22
nSTAND3
Ank_4
Ank
PhoH
SRP54
AAA_25
AAA_16
Ank_5
AAA_30
T2SSE
AAA_7
Motif
Other DBs
NCBI-GeneID:
117478932
NCBI-ProteinID:
XP_033981791
LinkDB
All DBs
Position
Unknown
AA seq
1379 aa
AA seq
DB search
MSGSQRPARSRKTVSNGMKKIHIDEVVKISVNVALERFRYGDQKEMEFPSSLTSTERAFI
HRTAQSLGYISRSKGKGPNRFLTLRKKSCTDKPRPSMPLPLSQNSIYSIRSLLQRFPVSN
KERIDMQPNTRNGMSVSSESEGGCDRASGRLNNGIPTVPKRRSPSDLDTFRQSLPVHERQ
EEIIHVIRESRVVLVVGETGSGKTTQIPQFLLDDCSRKGEPCRIFCTQPRRLAAIAVAER
VAAERGERVGQTVGYHIRLESRVSPKTLLTFCTSGVFLRTLMSGDASLTNVTHVIVDEVH
ERDGLTDFLLTKLRDVLQKIPSLKLILSSAALDVDLFLKYFGSCPIIHLKGRLFEVKELF
LEDILRLTGFNNKDMKKYKEETQRKEKKQKNLKEWCEAVESSCVEERRMSPVSVPAFLDN
KPMENDTEQLVPWLLKEMDSCITNIFLNEDQDAFIQLFNLILYENVNVDYRHSDTGSSAL
MVAAGRGFLPQMEQLLNMGADINLKASNGWTGLDFATHFQQTEAMDLLKSSIPLGEVSSQ
DESSLVHHHAAEIGPEEQELLKLYHHSFDDDFVDLDLIMDLMHNICSTTSEGALLVFLPG
YDDIVSLRDRLLYDDKRFTIHSDRFQVFTLHSDMQTLDQRKAMKPSPPGIRKIILSTNIA
ETSITINDVIFVIDSGKVKEKSFDTLSHVSMLKTVWISKASALQRKGRAGRCRPGICFHL
FSRLRFSNMLEFQVPQLLRMPLQELCLQTKLLAPSSCPVADFLSKAPQPPSAHAIRNAVQ
MLKTIDAMDQNEDLTDLGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFV
LPAQGGQKKAAIECRKRFTANTFSDHMALLRAFQAWQKARSDGWERSFCEKNFLSQATMD
MILGMRTQLLGQLRAIGFVRARGGSDIRDVNLNSENWAMVKAALVAGMYPNLVHVNQETS
LPSSYREKKVHFHPSSILNQSQLKENGPSRGPPQALPTDWLIYDEMSRGHRMASVRCCSM
VTPITVAIFGGCAKLPSSALQEPSAPRDSFQENSDSETEELSEFSLDDWLIFQLDSEAAG
AVFELRQKWQNLFIKRIRCPSKPWTQQDEAIIRTLVSVLGAEEQGAGLLQPTGIGQRPRP
ITSEDDSQAFLKNSKSSPQPPSNTSNDRSCRIPASSSLLQMKALCLDEASLPMNPLSEDP
PSSSNFSCSVSLDPSAPSSSDLKAPVLSAGLPLGAALHHEEQQCEEHRDLSAERDLVHHP
EQRGQTHQGLPREQPHHPHLLRAGIRALPGLRSHVLHHQSGELPGLGLHGAGGGVQCGVD
PQRERSLPLYATHPEHVERQQEGPDQQGRTGVGAAGRQPAVVSVGGKLCGSITVCSHPS
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggtcacagcggcccgccaggagccggaaaaccgtctccaatgggatgaaaaag
atccacatcgatgaggtagtcaaaatatccgtgaacgtggctctggagaggtttcgctac
ggcgaccagaaagagatggagtttccttcgtccctgaccagtactgagcgggctttcatc
catcggacggctcagtccctgggatacatctccaggagcaaagggaaaggaccaaatcgc
ttcctcaccctgaggaaaaagagctgcacggacaaacctcggccctccatgcccctccca
ctctcccaaaattcgatatattccatccgcagcctcctgcagaggttccccgtcagcaat
aaggagcgcatcgacatgcagcccaacaccaggaacggcatgtctgtgtcttcagaatct
gagggcggctgtgacagagcgagcggacgtctgaacaacgggattcccacggtgccgaag
agaaggagcccgtcagatctggacacttttcggcaatctcttcctgtccacgagcgccag
gaggagatcatccacgtgatcagagaaagccgcgtggtgctggtggtgggggagaccggc
tcgggaaaaactacacagatcccacagttcctcctggatgactgcagcaggaagggcgag
ccgtgcaggatcttctgtacgcagccgagacgcctggccgccatcgctgtggctgagagg
gtggcagcggagagaggagagagggtgggtcagactgtggggtaccacatcagactggag
agcagggtctcccccaagacactgctgaccttttgcaccagtggagtcttcctccgaacg
ttgatgtctggagacgccagcctgacaaacgtcacacatgtcatcgtggacgaggtgcac
gagcgagacggtctgactgacttcctgctcactaagttgcgagatgttcttcagaagatc
ccctcgctgaagctgatcctctccagcgccgctctggacgtagacctgtttctaaagtac
ttcggatcctgccctatcatccacctgaaaggacgactgtttgaagtgaaggaactcttc
ctggaggacatcctgcggctgacgggcttcaacaacaaggacatgaagaaatacaaggaa
gagacacagagaaaggagaagaagcagaagaacttgaaggagtggtgcgaggcggtggag
agcagctgtgtggaggagagacgcatgagtcctgtttctgtacctgccttcctggacaac
aagccgatggagaacgacaccgagcagctggttccgtggctgctgaaggaaatggactcg
tgcattacaaacatcttcctgaacgaagaccaggacgctttcattcagctcttcaacctc
atcctctatgagaatgtgaacgtggactaccggcacagtgacaccggctcctcggctctg
atggtggcagccggacgaggcttcctccctcagatggagcagcttctcaacatgggggcc
gacatcaacctgaaggcctccaacggctggacagggttagactttgccacacacttccag
cagacggaggctatggatctactcaaatcttccattcctctgggagaggtgagcagtcag
gatgaatcctctctggttcatcatcacgccgcagagatcggccctgaagagcaggagctg
ctcaaactctaccaccacagctttgatgatgacttcgtggacctggacctcatcatggat
ctgatgcacaacatctgctccaccaccagtgaaggtgctctccttgtttttcttcctgga
tacgatgacatcgtgtcactcagggaccgcctcctgtacgacgacaagagattcacgatc
cactctgacaggttccaggtgttcactctacattcagacatgcagaccctggatcagagg
aaagccatgaagccctctccacctgggatcaggaagataatcctctccactaacatagct
gagacgagcatcaccatcaacgatgtgattttcgtcattgattcaggaaaggtcaaagag
aagtcctttgataccctcagtcatgtctccatgttgaagacggtttggatctcaaaagcc
agcgctctgcaaaggaagggaagagcggggcgctgcagacctgggatctgtttccacctc
ttcagtcgcctcaggttcagcaacatgctggagttccaggttccacagctgctgaggatg
cctctgcaggagctgtgtctgcagaccaagctgctggccccctcctcctgtcctgtcgct
gacttcctgtccaaagctcctcaacctccgtctgcacacgccatcaggaacgctgtgcag
atgctaaagacaatagacgctatggaccagaatgaagacctcacagatctgggctaccac
ctggcggatctacctgtggagcctcacctgggaaagatggttctgtgtgctgtggtgctg
aagtgtctggaccccatcctcaccatcgcctgtacgctggcctaccgagaccccttcgtc
ctccctgcacagggggggcagaagaaagctgctattgagtgccgcaaacgcttcaccgcc
aacaccttcagcgaccacatggctctgctgagagccttccaggcatggcagaaggcccgt
agtgacggctgggagagatccttctgtgagaagaacttcctgtcccaggccaccatggac
atgatcctgggaatgaggacacagctactgggacaactgagggccatcggtttcgtgcga
gcgcgtggaggaagtgatatccgagatgtgaacctgaactctgagaactgggccatggtg
aaggcggctctggtggccggcatgtacccaaacctggtgcacgtgaaccaggagacctcc
ctgccctccagctacagggagaagaaggtccacttccacccctcatccatcctcaaccag
tcccagctcaaggagaacggcccatccagaggccctccccaggccctccccacagactgg
ctgatctacgatgagatgagtcggggtcacaggatggcgagtgtgcgctgctgctccatg
gtcactcccatcaccgtggccatctttggaggctgcgccaaactgcccagctccgccctg
caggagccgtctgcaccgagagacagttttcaggagaacagcgacagtgagacggaggag
ctctctgagttcagcctggacgactggctcatcttccagctggacagcgaggctgcaggc
gcggtgtttgaactgaggcagaagtggcagaacttgttcatcaagaggatccgatgtcct
tcgaagccctggactcagcaagacgaggcgatcatccggaccctggtttcagttttgggt
gcagaggagcagggggccggcctgctgcagcccacaggcatcggacagagaccccgaccc
attacatccgaggatgattcccaggcttttttaaagaactcaaagagcagcccccaaccc
cccagcaacacctccaacgacaggtcttgtcggatcccggcctcgtccagcctgctgcag
atgaaggcgctctgtttagacgaggcctcgctccctatgaatcctctctctgaagacccc
ccctcctccagtaacttctcctgctctgtgagcctggacccctccgctccttcctcctca
gatctcaaagcccccgtcctctcagccggccttcccctcggtgcggcacttcatcatgaa
gagcagcagtgtgaggaacatcgagatctctcagcagaaagggatctggtccaccacccc
gagcaacgagggcaaactcaccaaggccttcctcgagaacaacctcatcatcctcatctt
ctccgtgcagggatccgggcacttccagggctacgctcgcatgtcctccatcatcagtca
ggagagctgccaggactggggcttcatggggctggggggggtgttcagtgtggagtggat
ccacagagagagcgttcccttcctctgtacgcaacacatcctgaacacgtggaacgacaa
caagaaggtccagatcagcagggacggacaggagttggagccgcaggcaggcagccagct
gttgtctctgtgggagggaaactctgcggctcaataacagtctgttcacacccatcctga
DBGET
integrated database retrieval system
