Trematomus bernacchii (emerald rockcod): 117478967
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Entry
117478967 CDS
T09643
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03320
PPAR signaling pathway
tben04148
Efferocytosis
tben04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117478967 (rxraa)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
117478967 (rxraa)
03320 PPAR signaling pathway
117478967 (rxraa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117478967 (rxraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
tben03310
]
117478967 (rxraa)
Transcription factors [BR:
tben03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
117478967 (rxraa)
Nuclear receptors [BR:
tben03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
117478967 (rxraa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
Motif
Other DBs
NCBI-GeneID:
117478967
NCBI-ProteinID:
XP_033981835
LinkDB
All DBs
Position
Unknown
AA seq
503 aa
AA seq
DB search
METKPFLSLGFLKPQCSLAPPMQRGRSGEACSCFTGMCHLHQRRISSDSSGHMTSSPLGS
PTSHRGMHPSLLSPSMGHSGSLHSPISSLGSPMNGLTSPFSVISSPMGPHSMNSPGMGYG
PSLSPQMFQLNSPMNSVSSSEDIKPPLGLNGVMKVPAQPSGTILSLTKHICAICGDRSSG
KHYGVYSCEGCKGFFKRTVRKDLSYTCRDSKHCVIDKRQRNRCQYCRYQKCLAMGMKREV
LLHAAVQEERQRAKERNENEVESTGCANEDMPVEKILEAEQAVEPKTETYIETNLGAPSN
SPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIT
IKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPD
SKGLSNPGEVEALREKVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFF
KLIGDTPIDTFLMEMLEAPHQMT
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaaccgttcctgtcattggggttcctgaagccccagtgctcgttggctcct
cccatgcagcggggtcgctcgggcgaggcatgttcctgtttcaccggcatgtgccacctc
catcagcgtcgcatatcctcagattcgtcaggccatatgacctcgtcacccctgggctca
cccacatcccacagaggaatgcacccgtctctattaagcccgtccatggggcactcgggc
tccctgcactctcccatcagctcgctgggttcgcccatgaacggcttgacatcacccttc
tccgtcatcagctcaccgatgggcccccactccatgaactcgcctggtatgggatacggc
cccagccttagcccccagatgttccagctaaactctccgatgaactcggtcagcagctcg
gaggacatcaagcccccgctgggcctcaacggtgtgatgaaggttcccgcccagccctca
ggcaccatcctgtcgctcaccaaacacatctgtgccatctgtggggaccgctcctcaggt
aaacactacggcgtgtacagctgtgaaggctgcaaaggttttttcaaaaggacggtgcgc
aaagacctgtcctacacctgtcgcgacagcaaacactgtgtcattgataagcgccagagg
aaccgctgccagtactgccgctaccagaagtgtctagccatgggcatgaagagagaagtt
ttgttacatgcagccgttcaggaggagcgccagcgagccaaggagagaaatgagaacgag
gtggagtccaccggctgcgccaacgaggacatgcccgtggagaagatcctggaggccgag
caggcggtggaacctaaaaccgagacctacatcgagaccaaccttggtgcgccatccaac
tcgcccaacgacccggtaacaaatatctgtcaggcggcagacaagcagctctttactctg
gtggagtgggccaagaggatcccacacttctctgagctgccactcgacgaccaggtcatc
ctcctacgagcaggttggaatgaactcctcattgcgtcattctcgcaccgctcgataacg
atcaaagacgggatcctgttggcgaccgggctgcacgtccatcgcaacagcgcccatagt
gccggagtgggcgccatctttgacagagtgctcacagaactggtgtcaaaaatgagggac
atgcagatggataagacagaactggggtgccttcgagcgatagtccttttcaacccagac
tctaaaggcttgtccaatcctggtgaggtagaagctctgagagagaaagtgtacgcgtct
ttagaggcctactgcaaacagaagtaccccgaccagcctggccgatttgccaaactgttg
ctgcggttaccggcgctgcgctccatcggcctcaagtgtctggagcacttgttcttcttc
aagctcatcggcgacacgcccatcgacacgttcctcatggagatgctagaagcaccgcat
caaatgacataa
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