Trematomus bernacchii (emerald rockcod): 117479039
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Entry
117479039 CDS
T09643
Symbol
cacna1bb
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent N-type calcium channel subunit alpha-1B
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04010
MAPK signaling pathway
tben04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117479039 (cacna1bb)
04020 Calcium signaling pathway
117479039 (cacna1bb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tben04040
]
117479039 (cacna1bb)
Ion channels [BR:
tben04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117479039 (cacna1bb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
EGF_Hmr-1
Motif
Other DBs
NCBI-GeneID:
117479039
NCBI-ProteinID:
XP_033981946
LinkDB
All DBs
Position
Unknown
AA seq
2507 aa
AA seq
DB search
MKRSLPHNSRWAERRSTVVYAVRSATLGSWRMLTLGAEYEDTWAVSPDRRAGPCLQRAEG
EPGPVEGEDPCSGDPEGPVWRADTVQKYDSVLHLEDQSRAGRGDGVRQIVRKHETLNSTP
WPRGMPRFAEDLPTRYGGGAGGGGRGGPGAGRGGARGGGAPGGPRVYKQSMAQRARTMAI
YNPNPVKQNCFTVNRSLFIFREDNLIRKYAKRITEWPPFEYMILATIIANCIVLALEQHL
PEHDKTPMSERLDDTEPYFIGIFCFEAAIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGI
LATVGTDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFA
IIGVEFYMGKFHSTCFKDDEIVADWPCGVEPPARLCTNGSICKGYWKGPNFGITNFDNIG
FAVLTVFQCITMEGWSEILYSTNDVAGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAK
ERERVEKRQEFLKLRRQQQIERELTGYLEWICKAEEVLLEEEDEIAEEKSPLDGAWYKRK
QNLPVHKRGKVKKGKNDLIGGEEGDDPFADISSVPPPGSPFGRASVKSSGKMDSSSYFRR
KEKRMRFFIRRMVKAPSFYWIVLCLVGLNTLCVAIVHYDQPDWLTRTLYTAEFVFLGLFL
TEMSLKMYGLGVRNYFHSSFNCFDFGVIVGSICEVIWDMIKPGASFGISVLRALRLLRIF
KVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGMFNFEEETPTTNF
DTFAAAILTVFQILTGEDWNAVMYHGIESQGGVHGGMFSSVYFIVLTLFGNYTLLNVFLA
IAVDNLANAQELTKDEEQQEQAANKKLALQKAMEVKEVSPMSAANISISAFVKQNRDAIS
RRSSINSIQSAKEQLRSAKSMSVWEQRTNQLRKHNMRTSSEALFNELEPEERLQLASALH
LHPDMMTHLDRPLVVEAKNGDKPCRSPDGGREETGEFRHDGMGENQTHSRRHHRHRERNG
EGRDGGEGHGGRHHTHHSRSRDQNGDRERRGDSSHSHDEGGQGHRHNHQAGSPEEDNKDF
RGGEERGHRHHHSHRSPKEGNGVIANGAQGEHRGKGGGGGESNGERRGRCSRMVRAHSTL
DGDDCKRNKNGFKGHRDRQPDAEDDGLASSPLQPMRSNLSLGEKQEDADNQKNSTRASQA
GLNSNTIVIPVTITAPPGETTIIPMNNIDCDNFLFSDEKKDLEDEEAANGPRQILPYSSM
FVFGQTNPVRRLCHYVVNLRYFEMCILLVITMSSIALAAEDPVQANAPRNNVLKYLDYVF
TGVFTFEMVIKMIDLGLILHPGAYFRDLWNILDFIVVSGALVAFACSGTKGKDINTIKSL
RVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKFFY
CTDESKGLEKDCRGQFLDFNRDGVEAQPRVWKKYEFHYDNVLWAFLTLFTVSTGEGWPLV
LKHSVDATYEDKGPSPGFRMETSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKAMSEC
SLEKNERACIDFAINAKPLTRYMPANKQSFQYKMWKFVVSSPFEYAIMSLIALNTVVLMM
KCDPAPDLYKSMLKYLNILFTALFTLECFLKIIAFGPLNYLKAAWNVFDFVTVLGSITDI
LVTEIKTDKVLNLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFF
IYAIIGMQVFGNIKLIEENAINHHNNFQTFFQALTLLFRSATGEAWHEIMLACLSNRPCD
SLTGTLGNECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDASILGPHHLDEF
IRVWAEYDPAACGRICYQDMYKLLRFISPPLGLGKKCPNRVAYKRLVRMNMPIAEDKTVH
FTSTLMALIRTALEIKLASGVLAQHLCDADLKREIARVWPSLSQKTVDLLVTPPKYNELT
VGKVYAALMIFDYYKQTCAKRLQQQNNTGLPQSKLFRPVLTLTQIKEVEPTFPFPKQPSP
PQPEPETKLVALPSTSIPSISRDTALNQTRVIKHSQSGDVSQMAQQRPKVRRKLQRGQSE
DVPYTTRPQEFVELTKVEDISDSEAYPSLEGHCRAASLPRLNAEYYRSHPRHAPGTHLAP
IVDLSPIKRSASSLMPQHYQEVGLREYDLERPGLAQSPTGPGQIQDQDRAHHHHHHHRCH
RRREKDKDKKQKSLDRAGSVQPSSTVDSFTDPSAEGLSRERARERDRSRPHERRHHSSAG
EKQRYYSCERYGSREQCHTKSAGPSRSTSPGEGQDAALLRQHGSSVVKAVPLPSGSSTPG
RGRRQLPQTPLTPRPAVAYKTANSSPLQPSASAATTGPQTRFSRGLSEHDRLNWGHDESP
IPVTRIGSDSNLNRQSQLSPQQASHGEDFHDSVSSHGGGRFARNAASTSTSTTASASQGT
AAASVTAANTQGRSGVPNGFHFTLGGNSASATGSRGSLREREDEDWC
NT seq
7524 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaagtcttcctcacaactcgagatgggcagagagacggtcaactgtggtttat
gcggtgcgctcagccacgttgggctcgtggaggatgctcaccctgggggcagagtacgag
gacacctgggctgtgtcacctgaccggagggccggcccctgtctccagcgggcagaggga
gagccggggcctgtggagggagaggacccctgctctggagacccggagggcccggtgtgg
agagcggacacggtgcagaagtatgactcggtgttacacctggaggaccagagcagagcg
ggaagaggagacggtgtgcgtcagatagtccggaagcacgagacgctgaacagcacacca
tggcctcgcgggatgcctcgcttcgcagaagatctgcccacccgctatggaggaggcgca
ggcggtggagggagaggcggaccgggcgccgggagagggggagcccggggtggcggcgct
ccgggcggcccgagggtgtacaagcagtcgatggcccagagagcccggacaatggccata
tacaaccctaacccagtcaaacaaaactgcttcactgtcaaccgctccctcttcatcttc
cgcgaggacaacctcatcaggaagtatgcaaagcgaataacagagtggcctccatttgag
tacatgatcctagctacaattatcgccaactgcatcgtcctggccctggagcagcatcta
cctgaacacgacaagacgcccatgtcagaacgcctggacgacacagagccctactttatt
ggaatattctgtttcgaggccgccattaagatcatcgccctgggcttcgcgtttcacaaa
ggctcctacctccgcaacggctggaatgtaatggacttcgtggtcgtcctcacgggaatc
ctggccacggtgggtacagacttcgacctgcgaaccctgcgagcagtgagagtgctgagg
cccctgaaactggtgtcaggaatccccagtctccaggtggtgttgaagtccataatgaaa
gccatggttcctctgcttcagatcggcctgctgcttttcttcgccatcctcatgttcgcc
atcatcggggtggagttttacatgggaaaattccacagcacctgcttcaaagatgatgag
atagtagcagactggccttgtggcgtggagcccccggccaggttgtgtacgaatgggtcc
atctgcaaaggatactggaagggacccaactttggcatcaccaactttgacaatatcggg
tttgcggtgctgacagttttccagtgcatcaccatggagggctggtcggaaatcctctac
agcaccaatgacgtggcggggaacacctggaactggctgtacttcatccccctcatcatc
atcggctccttcttcatgctcaacctggtgctcggtgtcctgtctggagagtttgccaaa
gagagggagcgtgtggagaagaggcaggagttcctgaagctccgccggcagcagcagatc
gagcgagagctcaccgggtatttggagtggatctgcaaagcagaggaggtgttgctggag
gaggaggatgagatagcagaggagaagtccccgctggacggtgcgtggtacaagaggaag
caaaaccttccagtccataagcgtggcaaagtgaagaaaggtaaaaacgacctgatagga
ggcgaggagggggacgatcctttcgctgacatctcctccgtccctcctcctggctctccg
tttggtcgggccagcgtgaagagcagcggtaagatggacagctcctcgtacttccggcgc
aaagagaagaggatgcgcttcttcatccggcgcatggtcaaggctccgagcttctactgg
atcgttctgtgtctggtgggcctgaacactctgtgcgtggccatcgtccactacgaccag
cccgactggctcaccaggaccctctacacagcagagtttgtgttcctgggtttgtttctg
actgagatgtccttgaagatgtacggcctcggagtgaggaattattttcactcatccttt
aactgctttgattttggggtgattgtgggaagtatttgcgaggtgatctgggacatgatt
aaacccggagcatcgttcggtatcagcgtgttgagagcgctgcgactgctcaggatattc
aaagtcaccaaatactggaactcgctgaggaacctcgtggtctccctcctcaactccatg
aagtctatcatcagcttgctcttcctcctcttcctcttcatcgtggtctttgctctgctc
ggcatgcagctcttcggaggaatgtttaactttgaagaagagaccccaaccaccaacttt
gatacgtttgcagcagccatcctcactgtgttccagattctgacgggcgaggactggaac
gctgtgatgtaccacggcatcgaatcacaagggggcgtacatgggggcatgttctcctca
gtctacttcatcgtcctcacgctctttggaaactacaccctactgaatgtcttcttggct
atcgctgtcgataacctcgcaaatgcacaggagctgactaaggatgaggagcagcaggag
caggcagccaataagaagctggccttgcagaaagctatggaggtgaaggaagtcagcccc
atgtcagcagccaacatctcaatctctgcttttgtaaagcaaaatcgagatgcaatctct
cgcaggtcgtccatcaacagcattcagtcagctaaggagcagctgcgctctgcaaagtcc
atgtcagtgtgggagcagaggaccaaccagctgaggaaacacaacatgaggacgagcagc
gaggctctgttcaacgagctggaacctgaggagcgcctgcagctggcctccgccctccac
ctgcaccccgacatgatgactcacctggaccggccgctcgtggtggaggccaagaacggc
gacaaaccctgcaggtctccagacggaggacgcgaagagacgggggaattcaggcacgac
gggatgggagaaaaccaaactcactccaggaggcaccaccggcaccgcgagaggaacggg
gagggcagggatggaggggaaggccacggagggaggcaccacacccaccacagccggagc
agagaccaaaacggggacagagagaggagaggggacagcagccacagccacgacgaagga
ggacagggacaccggcacaaccaccaggccggctcccctgaggaggacaacaaagacttc
agaggaggagaagagagaggacaccgccaccatcactcccatcgttcacccaaagagggg
aacggggtgatagccaacggagcacagggagagcacagggggaaggggggaggaggaggg
gagagtaacggagagaggaggggacgctgctctcggatggtcagagcgcactctactctc
gatggagacgactgtaagaggaacaagaatggattcaaaggtcacagggacaggcagccg
gatgctgaggacgacggcctggcctccagtcctctgcagcccatgcgcagtaacctgagt
cttggagagaagcaggaggacgccgacaaccagaagaactccaccagggccagccaggcc
ggcctcaacagcaacaccatcgtcatccccgtcaccatcaccgccccgcccggagagacc
accatcatacccatgaacaatatcgactgtgacaacttcttattcagcgatgagaagaaa
gacctggaggatgaggaggcggctaatgggcctcggcagatcctcccctacagctccatg
ttcgtctttgggcaaactaacccggtgcggcggctgtgtcactacgtggtcaacctacgc
tactttgaaatgtgcatcttgttggtcatcacaatgagcagcattgctctggcagccgaa
gatccagtgcaagcgaatgcaccgcgcaacaacgttctcaagtatctggattatgtcttt
acgggggtcttcacttttgagatggtgataaagatgattgacttgggactgatcctccac
cctggcgcttatttccgtgacctgtggaacattctggacttcatcgtggtcagcggagct
ctggtggcctttgcctgctcagggacgaaaggcaaggacataaacaccatcaagtccctg
agggtcctccgagtcctgcggccactcaagaccattaaacgtctccccaagctgaaggcg
gtgttcgactgtgtcgtgaactctctgaagaacgttcttaacatcctcatcgtctacatg
ctcttcatgttcatcttcgctgtcatcgccgtgcagctctttaaggggaagttcttctac
tgcaccgacgagtccaagggtctggagaaagactgcaggggtcagtttctggacttcaac
cgtgatggtgtggaagctcagcccagagtgtggaagaagtacgagtttcactacgataac
gttctctgggccttcctgacgctcttcaccgtgtctacgggagagggctggccactggtc
ctgaagcactctgtggacgccacctacgaggacaagggccccagccctggcttccgcatg
gagacatccatcttctatgtggtctacttcgtggtgttccccttcttcttcgtcaacata
tttgtggctttgatcatcatcactttccaggagcagggagacaaggccatgtcggagtgc
agcctggagaagaacgagagggcttgtatcgactttgccatcaacgccaagccgctaacc
agatacatgccggcgaacaagcagtccttccagtacaagatgtggaagtttgtggtgtcg
tccccgttcgagtacgccatcatgtctttgatcgccttgaacacagtcgtgctgatgatg
aagtgcgaccccgctccagacctgtacaagtccatgctgaaatacttaaacatcctcttc
acagccctcttcacactggagtgcttcctcaagattattgccttcggcccgctgaactac
ctgaaagcagcgtggaacgtgtttgactttgtgaccgtgctggggagtatcacagacatc
ttggtgacagagattaagacggataaggtgctcaacctgagtttcctgaggctcttcaga
gctgcgcgcctcatcaagttgctgcggcagggatacaccatccgcatcctgctgtggacc
ttcgttcagtccttcaaggctctgccgtatgtctgcctgctcattgccatgctgttcttc
atctacgccatcattggaatgcaggtgtttggaaacattaaactgattgaagagaacgca
ataaatcaccacaacaacttccagacctttttccaggcattgactcttctcttcaggagt
gcgacgggcgaggcgtggcatgagatcatgttggcgtgtctcagtaaccggccgtgtgat
agtctcacaggaactttggggaatgagtgtggaagtgactttgcctacttctactttgtc
tccttcatcttcctctgctccttcctgatgctgaacctgtttgtcgctgtcatcatggac
aactttgagtatctgaccagggacgcctccatccttgggcctcatcacctcgatgaattc
atccgcgtgtgggcggagtacgaccctgctgcctgcgggaggatatgctatcaggatatg
tacaaattgttgcgttttatctcccctcccctgggcctggggaagaagtgccctaacaga
gtggcttataagcgattggtgaggatgaacatgcccattgcggaggacaagacggtgcac
ttcacctccacgctgatggccttgatccgcacggcgctggagatcaaactggcatctggg
gtcctggcgcagcacctgtgcgacgctgacctgaagcgggagatcgcccgcgtgtggccc
agcctgtcgcagaagaccgtcgacctgctggtgaccccacccaaatacaacgagctgacg
gtggggaaggtctacgcagctctgatgatctttgactactacaagcagacctgtgccaag
agactccagcagcagaacaacacaggcttacctcagagtaaactgttccgtccggtgctg
accctcactcagataaaggaagtagaaccaacgttccccttccccaaacagcccagcccc
ccccagcctgagccagaaaccaagctagtggcactgcccagtacaagcatcccctccatc
agcagggacacagcgctaaaccagacgagggtcataaaacattcccagtccggagacgtt
tctcagatggcacaacagagacccaaagtccggaggaaactacagagaggccagtcagag
gatgtgccctacaccaccagacctcaggaatttgttgagctgacgaaggtggaggacatt
tcagactcagaggcatatccgagcctggagggccactgcagagcggcttctctgcccaga
ctcaacgctgagtactaccggagccaccctcgccacgcccctgggacccacctggcaccg
attgtggacctgagtcccatcaagcgctcggcctcctcgctgatgccgcagcactaccag
gaggtcgggctgagggagtatgacctggaacggcccggtttggctcagtccccgacgggc
ccaggtcagatccaggaccaggacagagcccaccaccatcaccaccaccaccgctgccat
agacgcagggagaaagataaagacaagaagcaaaagtctctggatagagctggatcagtg
cagccatccagcacagttgattcgttcaccgacccttcagcggagggtttgtccagagag
cgagcgagggagcgtgaccgcagccggcctcatgagaggaggcatcactcctcagcagga
gagaagcagcgctactactcctgtgagcgttacggcagcagagagcagtgtcacaccaaa
tcagccggtcccagcagatccacgtcccccggagaggggcaggacgctgctctgctcaga
cagcatggtagcagtgtggtgaaagctgtgccgctgccctcgggatcgagcactccgggc
cgcggtcgcaggcagctccctcagacccccctcacccctcgtcctgccgtggcttacaag
accgccaactcctcgcctctccagcccagtgccagcgccgccaccacggggccccagact
cgcttcagccgcggcctttcagagcacgatcggttaaactggggccacgacgagtccccg
atccccgtcacacgcatcggttcggactctaatctaaaccgccagtcgcagctctcccct
caacaggcgtcccatggagaggacttccatgactctgtgagtagccacggagggggacgc
tttgcccgaaacgcagcctccacctccacctccaccacagcctcggcttcacaaggaact
gctgctgcgtccgtcacagcggcaaacacgcaaggtcgctcgggggtgcccaacgggttc
cacttcaccctcgggggcaactctgcgtctgctactgggagccgagggagtctcagggag
agggaggacgaggactggtgctaa
DBGET
integrated database retrieval system
