Trematomus bernacchii (emerald rockcod): 117479235
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Entry
117479235 CDS
T09643
Name
(RefSeq) LOW QUALITY PROTEIN: semaphorin-6D-like
KO
K06842
semaphorin 6
Organism
tben
Trematomus bernacchii (emerald rockcod)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sema
PSI
Motif
Other DBs
NCBI-GeneID:
117479235
NCBI-ProteinID:
XP_033982149
LinkDB
All DBs
Position
Unknown
AA seq
1132 aa
AA seq
DB search
MASPSWFSPWRRSLLLILATCFLSESASSTHFPRDLEPISVVGSAQVYQFPGFQGLLQDN
DTLRLGLDFQRLLRINHMLYIAARDHVFAVNLTTASEEFFPQLKLTWRSEDVSKCTVRGK
NSDECYNYVKVLVPRDDETLFACGTNAFNPTCRNYKMASLEQVGEEVVGQARCPFESGQS
NVGLFAGGDFYSATMTDFLASDAVIYRSLGDGRPVLRTVKYDSKWLREPHFLHAIDYGNY
VYFFLSEIAVEYTALGKVVFSRVTRVCKNDNGGSPRVLERYWTSFLKARLNCSVPGDSFF
YFDILQSLTNVLQINQRPAVVGVFTTQDNSIPGSAVCAFYMDDIESVFDGKFKEQRTSDS
SWTPVPEEQVPRPRPGTCTGDGPAVDYKSSVQFPDEMLMFIKSYPLMDEAVPSVNHRPCF
TRTSSRSKLSQIVVDVSAGPYKDRTVMFLGSDDGRVLKLLTSTHPNDSFGSKLLEDIHVY
NPSKCNVQGQEDRRVLALELDKERHALFVAFSSCVIRVPLSRCSQHGACRRACLASRDPY
CIWLRTGSCANMAPGFKAGFEQDIEGDHLFHQDSCHVNVLATVRNQESAADSAYGVRGFP
EMEHAAANVHYTLLLACVLVAFSLGAILSGFLVSWYWSRSATQQARRMGKDPEVPHTLSL
RSLAKLNGLLDGQKKEDKHDVSILKMYSSFIPNGGAEPHLNTPAHAGLPLGDPELSLSLS
LSQGDGDLSGLPTPVSTPELPIKNMKALRHHQYERNQNCNNAADSSHKPTPCGSTSSLGF
MAVVRNSMTQQVFPFSHHHGNSLNNVAAHGAATSSTSLHLPDERNILNDEQAAEGGGLPH
HHLSQQSLPQRGGGASALDELLKHIHEVSASGTGGIKVLTSTSSSGAHHHNHHPYYNNNP
HSQTSTHYYSHSHHHSNHHNNNSSNGVHHQQQQIPENDSAPYYSTSTLPRDAPTQNSSSS
ASSSSSSSDNPTSSTSIQSSNSTSSSTALQQQVIPERPGRTSVSVTRHHSQRHLLIKMGS
GGRAAPRHHSFNQRTPQQAHFLARMNTNSSSNGPPGDSMAADMSRNAKCERQGPPVASAC
LTRQHSYSEGPHVQRAATVRRTLSLKPEVPPKPLFLPNTATSSMAEAGTFKY
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgcccagctggttttcaccgtggcgacggtcgctgctgcttatccttgctacc
tgtttcctgtctgagtccgcctcgagcacgcacttccccagagacctggagccaataagt
gtggtcggctcggcacaggtgtaccagtttccaggcttccagggtctgcttcaggacaac
gacaccctgcgtctgggtctggactttcagaggctgctgcgcatcaaccacatgctgtac
atcgctgccagggatcacgtgtttgcagtgaacctgacgacagcttcagaagagtttttc
cctcagctgaagctgacttggcgatctgaagacgtcagcaagtgtacggtcagaggaaag
aatagcgacgagtgctacaactacgtcaaagtgctggtgccgcgagatgacgagacgctg
ttcgcctgcggtaccaacgccttcaaccccacctgcaggaactacaagatggcgtccctg
gagcaggtgggggaggaagtggtgggtcaggcccgctgtccctttgagtctgggcagtcc
aatgtgggactgtttgctggcggagacttctactcggccaccatgacggacttcctggcc
agcgacgccgtcatctaccgcagccttggggatggccggcccgtcctcaggaccgtcaag
tacgactccaagtggctccgagagcctcactttctgcatgccatcgactacggtaactac
gtatacttcttcctcagtgagatcgctgtggagtacaccgccctgggcaaggtggtgttt
tctcgagtcacccgggtctgtaagaacgataatggaggatctcccagagttctggaaaga
tactggacttcttttctcaaggctcgtctgaactgctcggttcccggagattcgttcttc
tacttcgacattcttcagtccctcaccaacgtgctgcagattaaccagaggcccgctgtg
gtgggggtcttcaccacgcaggacaacagtattcctggctcagcagtctgtgcgttctac
atggacgacatagagagcgtcttcgatggaaagttcaaggagcagcggaccagcgactcc
tcctggactccagtccctgaggagcaggttcccagacccaggcccggtacatgtaccggt
gatggtccggctgtggactacaaatcatcggttcagttccccgacgagatgctgatgttt
atcaagtcgtaccctctgatggacgaagctgttccatctgtcaaccaccggccctgtttc
accaggacttcgagcaggtccaagctgagccagatagtggtggatgtgtctgccgggccg
tacaaggaccgcacagtgatgttcctgggttcagacgatggccgagtcctgaagcttctg
accagcacacatcctaacgacagcttcggatccaaactgctggaggacatccatgtctac
aatccatccaagtgtaatgttcagggtcaggaggacagaagggttctggctctggagctg
gataaggagcgccatgcgttgttcgtagcgttcagtagctgtgtgatcagagtgccgctc
agccgctgcagccagcatggagcctgtagaagagcctgcctggcctcccgtgacccatac
tgcatctggctgcgcaccgggagctgtgccaacatggcgccaggtttcaaggccgggttt
gaacaggatattgaaggtgaccacttgtttcatcaggacagctgtcatgttaatgtgttg
gcaactgtacggaaccaggagtctgcggccgactcagcctatggtgtccgtggttttcca
gagatggagcatgctgctgctaacgtccactacaccctgctgctggcttgcgtgttggtg
gccttctcgctgggcgccatcttgtcgggcttcctggtgtcgtggtactggagccgcagc
gccactcagcaggccaggaggatggggaaagaccccgaggtcccgcacaccttatctcta
cggtccctcgccaagctcaatggactgctggacggacagaaaaaggaggacaaacatgac
gtgtccatcctgaagatgtacagctcctttatccccaacggcggcgcagagcctcacctc
aacactcctgcgcacgcgggcctgccgctgggagaccccgagctcagcctctccctgtct
ctgtctcagggagatggagatctgtccggcctgcccacgcctgtctctacccccgagctc
cccatcaagaacatgaaggccctgcggcaccatcagtatgagaggaaccagaactgcaac
aacgcggcggacagcagccacaaacctacgccgtgtggctccacatccagtctgggtttc
atggctgttgtcaggaactctatgacacagcaggtgttccccttctctcatcaccatggc
aacagtttgaacaatgtagcagcacatggagccgctacctcttcaacttcactgcatctg
cctgatgaaaggaacatcttgaatgatgagcaggcagcagaaggcggaggactacctcat
catcacctctcccagcagtccctgccccagagaggggggggggcatccgcgctggacgag
ctcctcaaacacatccacgaggtgagcgcgtcaggaaccggcggcatcaaggtgctcacc
tccacctcctcatctggagcacatcatcataatcaccacccttattataataataatccc
cacagccagaccagcacccactactacagccacagccatcaccatagcaaccaccacaac
aataacagcagcaacggcgttcaccatcagcagcagcagatccctgagaacgactcagct
ccatattacagcacctccactctgccaagggatgctcccactcagaactcctcctcctct
gcttcttcttcctcgtcatcctctgacaaccccacctcttccacctccatccagtcatcc
aactctacttcctcctcaacggcactccagcagcaggtgattccagaaagaccaggaaga
acaagtgtctcagtcacacgccaccactcccagcgccacttgctcatcaagatgggcagc
gggggccgtgccgcgccgcgtcaccacagcttcaaccaacggacgccgcagcaggcacac
tttttggccaggatgaacaccaacagcagcagcaacggacctccaggcgacagcatggcg
gctgacatgagcagaaatgccaaatgcgagaggcaggggcctccagtcgccagcgcctgc
ctgacgcggcagcacagttacagtgaagggccacatgtgcagcgggcggcaaccgtccgg
agaacactctcgcttaaacccgaggtcccgccaaaaccgctgttccttccaaacacagcg
acatcatcaatggcagaggcgggaacattcaaatactga
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