Trematomus bernacchii (emerald rockcod): 117479375
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Entry
117479375 CDS
T09643
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a
KO
K19719
collagen type II alpha
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04510
Focal adhesion
tben04512
ECM-receptor interaction
tben04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117479375 (col2a1a)
04518 Integrin signaling
117479375 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117479375 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tben00536
]
117479375 (col2a1a)
Glycosaminoglycan binding proteins [BR:
tben00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117479375 (col2a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Amnionless
Motif
Other DBs
NCBI-GeneID:
117479375
NCBI-ProteinID:
XP_033982212
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MFGFVDSRTVLLLVASQFVLLAVVRCQEEADQEAGGCIQDGQQYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPLIPSGECCPICPADASAPIETLGAQGQKGEPGDIADVVG
PKGPPGPMGPSGEQGSRGEAGAKGDMGNAGPRGRDGEPGIPGNPGPAGTPGTPGLGGNFA
AQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGSPGETGEPGPAGALG
PRGPSGPSGKPGSDGDAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGESGSAGENGASGPMGPRGLPGERGRSGAAGSAGARGNDGLPGPAGPPGPLG
PAGAPGFPGSPGSKGEAGPTGGRGSEGAQGPRGEAGTPGSPGPSGASGNPGTDGIPGSKG
SAGGAGIAGAPGFPGPRGPPGPQGATGSLGPKGQSGDPGLPGFKGEAGPKGELGPIGPLG
GPGPAGEEGKRGARGEPGTAGPLGPPGERGAPGNRGFPGQDGLAGAKGALGERGVPGAAG
PKGSGGDPGRTGEAGLPGARGLTGRPGDAGPQGKVGAPGSNGDDGRPGPPGPLGARGQPG
VMGFPGPKGAGGVAGKTGEKGLVGRPGLRGLSGKDGETGSAGPSGPAGPAGERGEQGQPG
PNGFQGLPGPSGAPGEGGKPGDQGVPGEAGANGVSGPRGERGFPGERGGAGAQGLQGPRG
IPGTAGSDGPKGAIGPSGSAGSQGPPGLQGMPGERGTGGITGAKGDRGDNGQKGPEGAAG
KDGGRGLTGPIGPPGPSGPNGAKGETGASGPNGAGGARGAPGDRGEGGPPGPAGFAGPPG
SDGQPGAKGELGESGQKGDGGAPGPQGPSGAPGPVGPTGVSGPKGMRGAQGAAGATGFPG
AAGRVGTPGPNGNPGAAGPSGPAGKDGPKGVRGDAGLTGRQGDGGLRGPPGSHGEKGEAG
EDGPPGPDGPSGSMGLGGSRGIVGLPGQRGERGFAGLPGPSGEPGKQGSTGAAGDRGPPG
PVGPPGLSGPSGETGREGTAGSDGPPGRDGSAGIKGERGNTGPAGAPGATGAPGSTGPVG
PLGKQGDRGEGGAQGPAGPSGPAGARGMAGPQGPRGDKGESGETGERGQKGHRGFTGLQG
LPGPPGPNGDSGSAGPAGPNGAKGPGGPSGPAGKDGSNGTPGPIGPPGPRGRSGESGPAG
PPGNSGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDSTLK
SLNNQIENMRSPDGTQKNPGRTCRDLKLCHPEWKSGTYWVDPNMGSIADAIKVFCNMETG
ETCVKPSIAEVPKKNWWTSKSNDRKHVWFGETMNGGFHFSYADDGPVANTGSIQLTFLRL
LSTEATQNLTYHCKNSVAYMDQASGNLKKALKLQGSNDVEIRAEGTSRFTYTVMEDGCKR
HTDRWAKTVIEYKTQKTSRLPFVDIAPMDIGGADQEFGVEVGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgtttggctttgtggattcaaggactgttctgctacttgtagcatcccaatttgtttta
ctagccgtcgtcagatgtcaggaagaggctgaccaggaggcaggtggctgcatccaggac
ggccagcagtataatgataaggatgtgtggaagcccgagccgtgtcgtatctgtgtgtgc
gacagcggagcggttctgtgtgatgagataatctgcgaggagatcaaagaatgtgccaac
cctctcatcccatctggagagtgctgtcccatctgccctgctgatgccagtgcccccatt
gagacactcggcgctcagggccaaaaaggagaaccaggagatattgccgatgttgtagga
ccaaaaggaccaccgggcccaatgggcccctcaggtgagcagggatcacgcggagaagct
ggcgctaagggtgatatgggaaatgcaggacctcgtggaagagatggcgagcccggcatc
cccggaaaccccggacccgccggcacacctggaacaccaggacttggagggaactttgct
gctcagatggctggaggttttgatgagaagtctggaggcgctcagatgggtgtgatgcag
ggaccaatgggtcctatgggtcctcgtggtccccccggaccaagtggagctcctggccca
caaggtttccaaggatcccctggagagactggagagcccggaccagctggcgcattggga
ccacgtggaccatctggaccttctggcaaacctggaagcgatggtgatgctggcaaacct
ggcaaagctggtgagcgtggacctgcagggcctcagggagctcgtggattccctggaact
cctggacttcccggaatcaaaggacacagaggtcatcctggtctggatggagctaaggga
gaaactggagccgctggagccaagggagagtctggttctgctggagagaacggcgcctcc
ggacccatgggaccccgtggtctgcccggtgagaggggtcgctctggagctgctgggtct
gctggtgcccgtggtaatgatggtctgcccggtcctgctggtcctcctggacctcttggt
cctgctggagctcccggtttcccaggatccccaggatctaagggagaagctggtcctact
ggaggccgtggatctgaaggagcacagggacctcgcggagaggccggcacccccggatct
cctggaccctctggtgcatctggtaaccctggtactgatggtattcctggatctaaagga
tctgctggtggtgctggtattgctggtgctcctggtttccccggcccccgtggccccccc
ggacctcagggcgctacaggatctctgggaccaaagggacagtctggagaccctggtctt
cctggattcaaaggagaggctggacccaaaggagagcttggccctattggtcccctaggt
ggccctggacccgctggtgaagaaggaaagagaggagcaagaggagagcccggaacagcc
ggacccctcggacccccaggagagagaggagctcccggtaaccgtggtttcccaggacag
gatggtcttgctggagctaagggcgcccttggtgagcgaggtgttcctggtgctgctggg
cccaaaggtagcggcggagaccccggacgcacaggagaggctggtctgcccggagccaga
ggtcttactggtcgccccggagatgctggacctcaaggcaaagttggagcccctggatct
aatggagatgacggtcgccccggaccccccggccctctgggagcccgtggacagcccggc
gtgatgggattccccggaccaaagggagccggaggtgtagctggaaagacaggagagaaa
ggtcttgttggtcgtcctggactgagaggtctttctggaaaagatggtgagactggatct
gctggaccttccggccctgctggacccgctggagagagaggagagcaaggacagcctgga
cccaatggattccagggtctgcctggacccagtggtgccccaggagagggtggaaagccc
ggagaccagggagttcctggagaggccggagctaatggtgtttctggacccagaggtgag
cgtggtttcccaggagagagaggaggtgctggagctcagggtctgcagggacctcgtgga
attcctggtacagctggaagtgacggacccaagggagccattggaccatctggttctgct
ggatctcagggaccccccggcctgcagggtatgcccggagagagaggaactggtggcatc
actggagccaagggagacagaggtgacaacggacagaagggacctgagggagctgctgga
aaggacggtggtagaggtttgaccggtcccattggtcctcctggcccatccggacccaac
ggcgccaagggtgagactggagcttcaggacctaatggtgctggcggtgctcgtggtgct
cctggtgaccgtggagagggcggtcctcctggccctgctggtttcgctggacctcctggt
tcagatggtcagcctggtgctaagggagagcttggagagtctggacagaaaggagatggc
ggtgctcccggacctcagggaccctctggagcccctggacctgtgggacccactggtgtg
tctggacctaaaggaatgcgtggtgctcagggagctgctggtgctactggtttccccggt
gctgctggtagagttggaactcctggtcccaatggtaaccccggtgctgctggtccttct
gggcctgctggtaaagacggacctaagggcgttcgtggtgatgccggcctcacaggaaga
cagggagacggtgggctccgtggacccccaggatcacatggagagaaaggagaggctgga
gaggatggacctcctggtcccgatggaccttcaggatctatgggtctgggtggatctcgt
ggtatcgtaggtctgcctggtcagcgtggagagagaggtttcgctggtctccctggacct
tctggagagcctggtaaacaaggatctactggtgctgctggcgaccgtggaccccctgga
cctgtgggacccccaggactgagtggaccttctggagagactggacgagagggtaccgct
ggatcagatggaccccctggtagagatggatctgctggaatcaagggagagagaggaaac
accggccccgctggcgcccctggagctactggagcccccggatccaccggacctgtcgga
cccctcggaaagcagggagacagaggagagggtggcgctcaaggacctgcaggaccatct
ggacccgcaggagcccgaggaatggctggaccccaaggaccccgtggagacaagggagag
tctggtgagactggagagagaggacagaagggtcaccgtggattcactggactgcagggt
cttcctggacctcctggccccaacggagactctggatccgctggacctgccggaccaaac
ggagctaagggacctggtggaccatctggacctgctggcaaagacggatcaaatggaacg
cccggccccatcggaccccctggacctcgtggacgttctggagaaagcggccctgctggt
cctcccggaaactctggacccccaggcccccccggtcctcccggccccggcatcgacatg
tctgccttcgccggtctgggtcagactgagaagtcccccgatcctctgaggtacatgagg
gccgatgaggcctccagctccctgaggcagcacgacgttgaggtggattccactctgaag
tccctcaacaaccagatcgagaacatgcgcagccccgacggcacccagaagaaccccggc
cgcacctgcagagacctgaagctgtgccaccccgagtggaagagcggtacctactgggtg
gaccccaacatgggcagcattgctgatgccatcaaggtgttctgcaacatggagactgga
gagacctgcgtgaaaccaagcatcgccgaggtgccaaagaagaactggtggacaagcaag
agcaatgaccgcaaacacgtctggttcggagagaccatgaatggaggattccacttcagc
tacgctgatgacggccctgttgccaacactggcagcattcagctgaccttcctgaggctc
ctgtccactgaggcaacccagaacctcacctaccactgcaagaacagcgtggcctacatg
gaccaggcctctggcaacctgaagaaggctctgaagctgcagggctccaacgatgtggag
atccgcgccgagggcaccagtcgcttcacttacaccgtgatggaggatggctgcaagaga
cacacagaccggtgggccaagaccgtcatcgagtacaaaacacagaaaacctcccgtctg
ccattcgtggacattgctcccatggacatcggaggagcggatcaggagttcggagtggaa
gtaggcgcagtctgcttcttgtaa
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integrated database retrieval system
