Trematomus bernacchii (emerald rockcod): 117479387
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Entry
117479387 CDS
T09643
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117479387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tben03021
]
117479387
03036 Chromosome and associated proteins [BR:
tben03036
]
117479387
Transcription machinery [BR:
tben03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117479387
Coactivators
SAGA/TFTC/STAGA complex
117479387
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
117479387
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
117479387
NCBI-ProteinID:
XP_033982227
LinkDB
All DBs
Position
Unknown
AA seq
949 aa
AA seq
DB search
MRLTSKRDWAKMAAGSDLLDDVFFNTEVDEKVVSDVVGSLESELTGAGPTNTTIRVQFAA
NHLGNSAVISHSNVQCSKMGLSQQELAKAGTGVQGGVISSTGSPGSSMDGAAGNTLSMTA
AQTQPKPGTASGVVTVVSGATSGVDKPATTAVQTLNGSAVLMNCNVTGGRGSKTSQSAVT
LVNNGPVSASREGATVLSANNIIRTSSTSAQHVVISSQPSVKSVPTVTLLRPPMQTPTNP
SHTVLTSPTSTTGSLINKFDSTQTIMQAVATGTPATMRSPTVLQNVRTSVPSTIAATPPA
GIRAIAPQVLAPRLTQPQQNTPNIQNIQLPPGMVLVRSESGQLLVIHQQTLAQMQAQTQS
QSAMTPRPAAPSSTPPVQITSLQAPGASLLPRPVPPTTIIKQGTTVQTTVAASTTLQRPP
VLQNTIMLGGTSASTGQPIGAPTPVQPGCAVTQRGNGTPVPPTAISAETLENVKKCRNFL
STLIKLASSEKQSSETSANVKELVKNLLEGKMEPEDFTSRLYRELNSSPQPYLVPFLKRS
LPALRQLTPDCEAFIHQSLLPLPSNQPAAASTALTAVVLRPPLSTAPTMATSTAGAKTTV
ISLTQTPHSKPALMVPQQQMIVRPQVTLAQSPMVTVRGQSHSRIIVGQPQMAKPLQTAVR
QTFTPMVRAGQVVSQTPLSAAQRLKEAGRGTFRDDDDINDVASMAGVNLSEESARILATN
SELVGTVTRSCKDEAFLSPSILTRRALEIGKKFGVSELGTDVINYISYAAQQRLRHLLEK
VSQVAQHKNTTFKEEERCEQVTDVRTQLKFFEQLDQMEKQRKEGLEREILLKAAKSRSRQ
EDPEQLRLKQKAKEMQQQELAQIRQREANLAALAAIGPRKKRKMDSPVRGASAEGSGAGP
SQPGGSSAASSRQFMRQRITRVNLKDLLFCLENERETSRSNLLYKGFLK
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctcacgagcaagcgcgactgggcaaagatggcggcgggctccgatttgcttgat
gatgttttcttcaacacagaggtggacgaaaaagtagtaagtgatgtagtgggatctctg
gagtctgaactaactggagcagggcccaccaacacaacgatcagggttcagtttgcagca
aatcacctcggaaactcagctgtaattagtcattccaatgttcagtgcagcaaaatggga
ctttcacaacaagagctcgctaaagcagggacaggagtgcaaggaggtgtcattagcagt
acggggtccccgggttcaagtatggatggagccgccgggaacacattgagtatgacagcc
gctcagactcagcctaaaccggggacagctagcggagtcgttacggtggtatcgggtgca
acatctggtgtggataaacctgcaactactgctgtgcaaactctgaatggaagtgctgtg
ttgatgaactgtaatgtcaccggaggccgtggcagcaaaacctcacagtcagctgtcaca
cttgtaaacaatggacctgtttctgcgagtagagaaggcgcaacagttttgtctgcaaat
aatataatacgaacttcttcgacgagtgcgcagcatgttgtgatttcgtctcagccatca
gtaaaaagtgtacccactgtcacgcttctgaggccacctatgcaaactcccactaacccg
tctcacaccgtgttaacatcacccactagcacgaccggctcgcttatcaacaaattcgac
tccacacaaactataatgcaggctgttgcgacagggacaccagccaccatgaggagtccg
actgttttgcaaaatgtgaggacttcagtaccttcaacaatcgctgccactcctcctgct
ggaatacgagctattgctccacaggtgttggccccacgactcacccagccccaacaaaac
actccaaatatccaaaacatccagctccctccaggtatggttttggtccgcagtgagagt
gggcagctgctggtgattcaccagcagaccttggctcagatgcaggctcagacgcagtcc
caaagcgccatgaccccccgacctgcagccccctccagcactccgcctgtccagatcact
tctcttcaggctccgggcgcgtccctgctgcctcgtcctgtcccccccaccaccatcatt
aaacagggtaccacagtccagacaactgtagcagcctccaccacactgcagaggcctcca
gtactgcagaacaccatcatgctgggaggaacgtctgcctccacgggacagccgatagga
gcccccaccccggtgcagcctggatgtgcagttacacagagggggaatgggacccctgtc
cctccaacagctatctcagctgagaccctggagaatgtaaagaagtgtagaaactttctg
tccacgctgatcaagttggcctctagcgaaaaacagtcttctgagacttcggccaacgtg
aaggagctggtcaagaacttactggaagggaagatggagcctgaagatttcaccagtagg
ttgtaccgggagctcaactcctcgcctcagccgtaccttgtgcctttcctgaagaggagc
ctcccagcgctgcgtcagctgaccccagactgcgaggccttcatccatcagagcctgctg
cctctgcccagcaatcagcctgcagctgcctccaccgccctcaccgccgtggtgctgaga
ccccccctctccacggcccccaccatggccaccagcaccgccggggccaaaactacagtc
atcagcctcactcagactcctcacagtaaacctgcactgatggtgccacagcaacagatg
atagtgaggccccaggtgacgctggctcagtctcccatggtaacagtcagaggacaatcc
catagccggatcattgtgggccagccgcagatggccaaaccgctccagacagcagtgagg
cagacgtttactcccatggtcagagcagggcaggtggtcagtcagacgcctctcagtgct
gctcagaggctcaaggaagcaggaaggggaaccttcagggatgacgatgatatcaatgat
gtggcctcgatggcaggagtcaacttgtcggaggagagtgcccgtatcttagcaaccaat
tctgagcttgttggcacggtgactcggtcctgtaaggatgaggcctttctctccccctcg
atactcacccggagagctctggagattggtaagaagttcggtgtcagcgagttggggaca
gatgtgataaactacatttcctacgccgcacagcagcgactcagacacctgctggaaaaa
gtttcacaagtggcgcagcataaaaacacaaccttcaaggaggaagagcgctgcgagcag
gtcaccgatgtgcgaacccaacttaaattctttgagcagctggatcagatggagaagcaa
aggaaggaagggctggagagggagattctgttgaaggctgctaagtctcggtcacggcaa
gaggaccccgagcagctgagactcaaacagaaggccaaagagatgcagcagcaggagctg
gctcagatcagacagagagaagccaacctagcggcgctggcagctatcggcccgaggaaa
aaacggaaaatggactctcctgttagaggagccagtgcagagggctcgggggcgggcccc
tctcagcccggcggctccagtgcagcgagctccagacagtttatgcgacagcgcattacc
agagtcaacctcaaggacctgctgttctgtctggagaatgaaagagagaccagtcgctct
aacctgctttataaaggcttcctcaaatag
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