Trematomus bernacchii (emerald rockcod): 117479441
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Entry
117479441 CDS
T09643
Symbol
mbd4
Name
(RefSeq) methyl-CpG-binding domain protein 4
KO
K10801
methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
117479441 (mbd4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tben03036
]
117479441 (mbd4)
03400 DNA repair and recombination proteins [BR:
tben03400
]
117479441 (mbd4)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
117479441 (mbd4)
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
117479441 (mbd4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MBD
HhH-GPD
Motif
Other DBs
NCBI-GeneID:
117479441
NCBI-ProteinID:
XP_033982279
LinkDB
All DBs
Position
Unknown
AA seq
460 aa
AA seq
DB search
MMHTGCDFQLETGGDINNQSHNDKDDSCHTSTLPPGWIREVRQRKAGKTAGKMDVYITSP
QGQRFRSRASLHAFLIKNGEGNLEIDLFDFTASKDDALTPSQLLPSQVKQKRRKKRNAGA
PQETKEDATEILDPPPNKSKKASSSLRSKTKDRKVKSACVKSFIKAPLTKEDDVKLQMSL
QRSGQLREKLLRLAPPSNQQHTLIVSKDEEADSRPSAPKLNVEPATESEDEGEDERGRDE
LQIHSKGANKSNSDLEADAEDEEEEVLLPDTTGGSCTPVRDSQNRSKCGEDKRKTSPYFR
RKHPSDDLSPPRRKAFKKWTPPRSPYNLVQETLFHDPWKLLVATIFLNKTSGKMAIPVLW
QFFERYPSAEVTREADWKPLSELMKPLGLYELRAKTLVRFSDEYLTKQWRYPIELYGIGK
YGNDSYRIFCVDEWRVVKPEDHMLNKYHDWLWENHERLGI
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgatgcatactggctgtgatttccagctggaaaccggtggagacataaataaccaaagt
cataatgacaaggatgactcatgccacacttccacattgccccctggctggatcagagag
gttaggcagcgtaaagcaggcaagacagcaggcaaaatggacgtctacattacaagtccc
caagggcagaggtttcggtcgagagcatccttgcatgctttcctcataaaaaatggagaa
gggaacctagaaatagacctctttgatttcactgcatccaaggacgatgctctcacccct
tcgcaattactcccctctcaagtgaaacagaagagaagaaagaaaagaaatgcaggtgca
cctcaggagacaaaagaagatgcaacagaaatactggatccacctcctaataaatctaaa
aaagcctcttcctccctcagaagtaaaactaaagacagaaaagtaaaaagtgcatgtgtg
aagagcttcataaaagcacctttaaccaaagaggatgatgtcaaactgcagatgagcctt
cagaggtcaggtcagctgagagagaagctactccgactggctcctcccagtaaccaacaa
cacactctcattgttagcaaggatgaagaagcagactcgaggccttctgctcccaaactg
aatgttgaacctgccactgagagtgaggatgagggtgaggatgaacgaggcagagatgag
ctgcagattcacagcaaaggtgccaacaaatctaattctgatctggaggcagatgctgag
gatgaggaagaggaggtgttgttacctgacaccactggtgggagctgcacaccagtgaga
gattcccagaataggtccaagtgcggggaagacaaacgcaaaacaagcccttattttaga
aggaaacaccccagtgatgaccttagcccccccaggaggaaggccttcaagaagtggaca
cctccccgctcaccctacaacctcgtacaggaaacacttttccacgacccctggaagctt
ttggtggccaccatttttctgaataagacgagtggcaagatggccataccagtgctgtgg
cagttctttgaacgttacccgtctgcagaggtgacccgggaggccgactggaagcccctg
tctgaactaatgaagccactaggcctgtatgagctcagagcaaaaacactcgtacgcttc
tcagatgagtatctaactaaacagtggcgttaccccattgagttgtacggtattgggaag
tacggcaacgactcctataggatcttctgtgtggacgagtggagagtggtgaaacctgaa
gatcacatgctgaacaaataccacgactggctatgggagaaccatgaaagacttggaatc
tga
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