Trematomus bernacchii (emerald rockcod): 117479472
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Entry
117479472 CDS
T09643
Symbol
zgc:158828
Name
(RefSeq) probable ATP-dependent RNA helicase DHX35
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117479472 (zgc:158828)
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117479472 (zgc:158828)
Spliceosome [BR:
tben03041
]
Complex C
Other components
Complex C specific factors
117479472 (zgc:158828)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
ABC_tran
AAA_22
Cas3-like_C_2
AAA_19
nSTAND3
AAA_30
AAA_23
Motif
Other DBs
NCBI-GeneID:
117479472
NCBI-ProteinID:
XP_033982318
LinkDB
All DBs
Position
Unknown
AA seq
699 aa
AA seq
DB search
MAAPLSTMKFWKPGAEAPGITEERELNTETTGSPIIFNPHTALSIEKQRQKLPVFKHRNN
ILYLVESFQTVIIVGETGCGKTTQLPQYLLEAGWATEGKVIGVTQPRRVAAISVANRVAE
ERGALVGHEVGYTIRFDDCSDPQATRIKFLTDGMLVREMMADPLLKKYSVLMLDEAHERT
LYTDIAIGLLKKIQKKRRDLRVIVASATLDAKKFHDFFNLNESGDPNKDTCGILTVEGRT
FPVDVFYTVSPVPDYVKATVETVLKIHETEEDGDVLAFLTGQEEVEKVVSLLQDQARSLS
RIGMKKHLRILPMYSGLPYADQMKVFERTPPTVRKVVVATNIAETSITINGVVFVIDCAF
VKLRAYNPSTAIESLVVTPISKASASQRAGRAGRNRPGKCFRLYTEEDFEKLPASTVPEM
QRTNLAPVILQLKALGIDNVLRFSFLSPPPAQTMVQALELLYALGGLDHYGRLTDPMGVR
MAEFPLSPMFAKMLLESGTFGCSKEIVTIAAMMQIQNIFVLPANQKKAAAREHRKFAVAE
GDHLTMLNVYEAFIKHQKSSQWCQEHFLNYKGLLRAVTVREQLRRLMNKFKVPRTSSEGD
PDVILKCIVLGFFSNAARIHHSGSYRTLRDDRELHIHPSSVLYGEKPPKWVVFNEVLQTA
KYYMRDVTAVESSWLVELAPHFYKQAKHGSLASKRSRVL
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcccctttccacgatgaaattttggaagccgggggctgaggctccggggatc
actgaggagcgggagctcaacacagagaccaccggctctcccatcatcttcaacccgcac
acagccctctccatagagaagcaacgacagaaactccccgttttcaagcacagaaacaac
atcttatacttggtggagagcttccagactgtcatcatagttggtgagacaggatgtgga
aaaacaacgcagttaccccagtatcttctggaggctggctgggcaacggaggggaaggtg
atcggagtgacacagcctcgtcgtgtggctgctatctctgtagccaatcgcgtggcagag
gagcgaggggccctggtgggacatgaggtgggatacaccatccgttttgatgactgctct
gatcctcaagccacaaggattaagttccttacagatggcatgctggtgcgggagatgatg
gctgatcctcttttgaaaaaatacagtgtgttgatgctagatgaagcgcatgagagaact
ctgtacacggacatagccattggtctactaaagaagattcagaaaaagcggcgagacctg
agggtgattgtggcctctgccactctggatgccaagaaattccatgacttcttcaatttg
aatgagtccggggatcccaacaaggacacgtgtggaattctgaccgtggagggacgcacc
tttccagtggacgtcttctacactgtcagtcctgtcccagactatgtaaaggccacagtg
gagacagtgctgaagatccatgagacggaggaggacggagatgtccttgcttttcttacc
ggacaggaagaggtggagaaagtggtgtcccttctgcaggaccaggccaggtctttgtca
cgaatcggcatgaagaaacacctgaggattttgcccatgtactcgggtttaccttacgct
gatcagatgaaagtctttgagaggacgccgcccactgttcgcaaggttgtggtggccact
aacatagctgagacatccatcactataaatggggttgtgttcgtcattgactgtgctttt
gtgaagctgcgagcgtataacccgagcactgccattgaatctctggtggtaactccaatc
tctaaggcttccgccagccagagggctgggagagccggacgaaaccgtcctgggaaatgc
ttcagactctacacagaggaggactttgagaaactgcctgcctctactgtgccagagatg
cagcgcacaaatttggcccctgtcatcctgcagctgaaagcgctaggcattgacaacgtg
ctgcggttcagcttcctctcgcctcctccagctcagaccatggttcaggctctggagctg
ctctacgctctcggaggactagaccattacggacgtttgactgatcccatgggtgtgcgg
atggcagagtttcctctcagccccatgtttgccaagatgctcctagagtcaggaaccttc
ggctgctccaaagagattgttaccatcgcagcaatgatgcagattcagaatatatttgtt
ttgccggccaatcagaagaaagctgccgctcgagagcacaggaaatttgcagttgctgag
ggagaccacctcaccatgctgaatgtgtatgaagcattcattaagcaccagaagagctcc
cagtggtgtcaggaacatttcctcaactataaaggtctgctgcgggctgtgactgtacga
gagcagctcaggcgtctcatgaacaagtttaaggtgccgcggacgtccagtgaaggtgat
cctgatgtgatcttgaagtgcattgtacttgggtttttctcaaatgcagcacgcattcac
cattctggttcctaccggactttacgagacgatcgtgagcttcacatccaccccagctct
gtgctgtatggagagaaacctccaaaatgggtggttttcaatgaagtgctgcagacggca
aaatactacatgcgcgatgtgactgctgtggagtcgtcctggttggtcgagttggcccct
cacttttacaagcaggccaagcatggttcactggccagcaagaggtcccgggtcctctga
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