Trematomus bernacchii (emerald rockcod): 117479501
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Entry
117479501 CDS
T09643
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117479501 (prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117479501 (prpf6)
Spliceosome [BR:
tben03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117479501 (prpf6)
Complex C
U5 SnRNP specific factors
117479501 (prpf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_2
TPR_17
TPR_8
TPR_1
FAT
ARM_TT21_C
T7SS_EccA1_N
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
117479501
NCBI-ProteinID:
XP_033982377
LinkDB
All DBs
Position
Unknown
AA seq
962 aa
AA seq
DB search
MASSAKQGPKIVSKSSAGGAGAAGAGGGLPVMPLASPLMGKKKKPFLGMPAPLGYVPGLG
RGATGFTTRSDIGPARDANDPVDDRHAAPGKRTVGDQMKKKEEDEEDLNDTNYDEFNGYA
GSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRELREKDEIEKYRMERPKIQQQFSDL
KRKLSGMSEEEWLSIPEVGDARNKRQRNPRNEKLTPVPDSFFSKHLQTGDKHTTVDPLQG
LAGLNTPYPGSMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNS
MIPTHGGDISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMC
PKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDMRAKKRVLRKALEN
VSKSVRLWKTAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARRVLNKAREN
IPTDRHIWITAAKLEEANDNVQMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSV
ATCQAVIRDVIGIGIEEEDRKHTWMEDADSCVSHGALECARAIYAHALQVFPSKKSVWLR
AAYFEKNNGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAEDVPAARSILALAFQANP
NSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIDAAQELCT
EALKHYEDFPKLWMMRGQIEEQGENMDKAREAYNQGLKKCPHSSGLWWLLSRLEERVGQL
TRARAILEKARLKNSQSPELWLESVRLEFRAGLKNIANTLMAKALQECPNSGILWAEAVF
LEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFLRTVKIEPDLGDAWA
LFYKFELQHGTEEQQEEVRKRCENAEPRHGELWCAESKHVLNWQKKTGEILAGVAGKIKN
TF
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atggctagctccgcaaaacaaggacctaaaattgtctccaaatcctctgcgggaggcgcc
ggggcggcgggggccggcggcgggctcccggtgatgcccctcgcctctccgctcatgggg
aagaagaagaagccgtttctggggatgcccgctccgctgggctacgtgcctggtctgggc
agaggtgcaactggtttcaccacccgatctgatatcggtcctgctcgtgatgcaaacgat
ccagtggatgaccgacatgcagctccagggaagaggactgttggggaccaaatgaaaaag
aaagaggaggatgaagaagatctgaacgacacaaactacgatgagtttaatggatatgct
ggtagcttgttctccagtgggccctatgagaaggatgatgaagaagcagatgctatatat
gcggcactggacaagaggatggatgaaagacgcaaagaaagaagggagctgagggaaaag
gatgaaattgagaaataccgtatggaacgacccaaaatccagcagcagttttcagatctt
aagagaaagttgtcagggatgtcagaggaggagtggctgagcatccctgaggtgggagat
gccaggaataagcgccagagaaatccccgcaatgagaaactcacccctgtccccgacagc
tttttctccaaacatctgcagactggagacaagcataccactgttgatcctctgcaaggg
ctggcaggtctgaacacgccctacccgggaagcatgacaccagggacaggagagctggac
atgaggaaaatcggtcaagccaggaacacacttatggatatgaggctcagccaggtatct
gactcagtgagtggccagacagtggtggatcctaagggttacctgactgatcttaactcc
atgatccccacacatgggggagacatcagtgacatcaaaaaggctcgtctgctgttgaaa
tcagtgagggagaccaatcctcatcacccgcctgcctggatcgcctctgccaggctggag
gaggtgacgggcaaacttcaggtggccaggaacctgatcatgaaaggcacagagatgtgt
cctaagagtgaagatgtgtggctcgaggccgccagactccaacccggcgacacagctaaa
gccgtggtggcccaggctgtccgccacctgccgcagtccgtccgcatctacatcagagct
gcagagctggagacagacatgagggcgaagaaacgcgtcctcaggaaggctcttgagaat
gtgtccaagtcagttcgactgtggaagacagctgtggagctggaggaaccagaggatgcc
aggatcatgctcagcagagctgtggagtgttgccctactagtgtggagctctggctggcc
ctggcccgtttagagacgtacgagaacgcacgtcgtgtcctgaacaaagctcgagagaac
atccccaccgatcgccacatctggatcactgctgccaagctggaggaggccaatgacaac
gttcagatggtagaaaagatcatcgacagggccatcacttctctacgtgccaacggtgtg
gagatcaacagagagcagtggatacaggatgcagaggagtgtgacaaagcaggcagcgtg
gctacctgccaggctgttataagagacgtcatagggattggcattgaggaggaagatcgc
aaacacacctggatggaagatgccgatagctgtgtttcccatggagcactagagtgtgcc
agagccatctatgcccacgctctgcaggtgttccccagtaaaaaaagcgtgtggcttaga
gctgcctactttgagaaaaataacggcaccagggagtccctggaggccctgctccaaagg
gccgtggctcactgtcccaaagcagaggtcctgtggctgatgggagccaagtccaagtgg
ctggctgaggatgttcctgctgccagaagtattctcgctctggctttccaggcgaaccca
aacagtgaagagatctggctggctgctgtcaagctggagtctgagaataacgagtatgaa
agagcccgtcgacttctggctaaggcccgcagcagtgccccgacagcaagggtgtttatg
aagtcggtgaagttggagtgggtgttggggaacatagacgctgctcaggagctgtgcacc
gaggccctgaaacactacgaggacttccccaaactgtggatgatgagagggcagatagaa
gagcagggtgaaaacatggataaggccagagaggcctacaaccaagggttgaaaaagtgt
ccccactcgagcggcctgtggtggctgctgtctcgtctggaagagcgagtcggacagctg
accagagccagggccatcctagagaaggcccgactcaagaactcccagagccccgagctg
tggttggagtcggtcaggctggagttcagggccgggcttaagaacatcgccaacacactg
atggccaaagccctgcaggagtgccccaattcaggcatcctgtgggctgaggcagtgttt
ttggaggccaggccccagaggaagaccaagagtgtggatgctttaaagaagtgtgaacat
gatccccacgtcttgctagctgttgccaagttgttttggagtgagcgtaagatcaccaaa
gccagagagtggttcctgaggacagtgaagatcgagcctgacctgggagatgcttgggct
ctcttctacaagtttgagctgcagcatggcacagaggaacagcaggaagaggtgcgaaag
cgctgtgagaatgcggagccccgtcatggagagctgtggtgtgccgagtccaaacacgtc
ctgaactggcagaagaagacgggagagatcttagcgggggtagccggcaagatcaaaaac
acattctga
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