Trematomus bernacchii (emerald rockcod): 117479772
Help
Entry
117479772 CDS
T09643
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tben03036
]
117479772 (tdrd12)
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
117479772 (tdrd12)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117479772 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TUDOR
CS
Helicase_C
Motif
Other DBs
NCBI-GeneID:
117479772
NCBI-ProteinID:
XP_033982747
LinkDB
All DBs
Position
Unknown
AA seq
1446 aa
AA seq
DB search
MIQPHHTCRSSETVSTMLEISIVKVESPSCLWGRVGRGREADQYDGLLAEMNLFYHDVTL
DPRKLKPTSLEEGQVCVVYWAVIKSWCRVLVESIITDSVSCQARCLLVDHGERLVVPSDQ
IRIAMQNFLQLPFWVRRFHLAKIKPTTLRVSVHEKKAGLIASTQWDSSSTLYMHSLLQAS
TRTEAVLLESEADSTSIELYLTVGSIKICLNDDLVAKKFAYYSRESGDSREMNEEDQLPV
MLPSSILTQTASSKPTAHTKSPTAISSGLTTPQVGSSAHGVSVSPLDNIHASSSLTSLLL
QSQQHELQPREEGSGSKVTEKGPDAAAAPAESDSSEDTDSSLAAALTKNLSLFKFLKFLN
PGSIFQQASPTVSEHEEQKESRPEETTAASCTEQEVLTPLNCEPETLHTHDLTSMSEQSG
AEGLCESSQVECIEDEGTSRWSRSEEKRWRSETDWACSRLLEWLNPEPVNPQSDTAHDAF
VPSDPRRSGILVHSLFPVEPCSSLDDAPITDSLRWVLKKKQGSVLTPAQRYSWPSVARGC
HTVIISPNAEQPISYIAPLLTHMVLNSIYTAVTSSAGPMAVLLCPGWEKVMVMMELLEEM
KLKSVLHPYTLLLGVGKDEAKAVRIPKNCLLLVTTPFSLVRLLSCHCFLFLRLYHLVLDE
ADQLFTLAPDQMATILQHFQKVTSSEENTSCPQQLIAVAKRWTNHIEALLANYMPYPCIV
MAIPEEAALYGNVQQIILMTVENNKISVLLGSLDFNSDVGQKTLIVAKSAQEVEDVFKAV
GSKSAFCLKTHEGLTHQFDFVVQQWRKDIGPGTHVILVTSSECLKCLGIRDATCVVHYGF
PTSPKVFGSRLFCMAEHFRNLSDRDQTGSPRLTRSVLLISERNACHVVGVLRYLERTNAP
LPPELLDFARGVNTAREEQKTHRPLCGYIKSFGVCRDSSVCPDRHTFVSELDQSVLPASG
VIEVVPLYIKTASVFYGHIVRKEDGGFQNMASEMKDFYADKKPGVEEILEGGLFAVQEDN
FYHRVKILSVPDRGDRLFYAVFVRFIDVGKEQEVKSHQILKLPERFHSLPGQAVEIIVCR
VKPVDAETDWHPKVTRAISQKIRGLQHRARAVFSLGNTVFVDPMVHMTQVPGMKTVINEY
TVQSEILSSGMAVGNPEHLELLKALCISGSGNGSVSLEVRIKAEEEALAEAVRAAELADL
PQLVPCEPLSPDSSTIQSLVPVTPVPPVLDLHLAPVSDQRPLMVSQSAAGQRNTHSADLR
IRIEDGELHPMISKSVLMECRQNGVSTGEDESSSQQLISSNETHCGDAVKSFHPLARWYQ
TSDSLIVTMKLKEPQNQSCLFFQDRVVYSGRVNERTYRADLQLHANIAPDRCCWEMKSNE
PVLKLSKQQPGHWEKLLRNKNIFVSYDVEHIVFENEDRTPNGVRFQENMGGDNNCYVVSE
SGSESD
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atgatacaaccacaccacacctgcagaagctcggaaacagtgtctaccatgctggaaatt
tcaattgtaaaggttgaaagcccgtcgtgcctttggggccgagtgggtcggggcagagaa
gcggatcaatacgacggtctgctggcagagatgaacctgttctaccacgacgtgaccctg
gaccctcgcaagctaaagcccacatcgttagaggaggggcaggtgtgtgtggtgtactgg
gcggtgattaagtcgtggtgtcgggtgctggttgagtccatcatcacggactcagtttcc
tgtcaggctcgatgcctcctggtggaccacggagagagactcgtcgtcccctcagaccag
atccggatcgcgatgcagaatttcctccagctgcctttctgggtgaggaggtttcacctg
gcgaaaatcaaaccaacaaccctgcgagtttccgtccacgagaagaaggcgggactcatt
gcatccactcagtgggacagctcttctactctctacatgcacagcctgctgcaagcttcc
actcggactgaggccgtgttgcttgaatccgaggcggactccacctccatagagctctac
ctgactgtaggaagcatcaagatctgtttgaacgacgatctggtggccaagaagtttgcg
tattacagcagagagtcaggtgacagcagagagatgaacgaggaggaccagcttcctgtc
atgttgccctccagcatcttaacccagactgcctcaagcaagccgactgcacacaccaag
tctcctactgctatttcttcaggtcttactacgcctcaggtcggcagctctgctcacggt
gtttccgtcagtcctctggataacatccacgcatcctcatcgctgacctctctgctgctt
cagagccaacaacatgagctgcagccccgtgaagaaggcagcgggtcaaaggtcacagag
aaaggtccggacgctgctgctgctcctgcagagagtgactcgtcggaggacacagactcg
tctctggctgcagctctgaccaaaaatctcagtctgttcaagttcctaaagtttctgaat
cctggcagcatcttccagcaggcgtctcccactgtgagtgagcatgaagagcaaaaagaa
agtcgacctgaagagacgactgcagcctcctgcacagaacaggaagtattaaccccttta
aactgtgagcctgagactctgcacacgcacgacttgaccagcatgagtgagcaaagtgga
gctgaaggtctttgtgagagcagtcaggttgaatgtattgaagacgaaggaacaagcagg
tggagtagatcagaggagaaaaggtggaggagtgaaacggactgggcttgttcgcgcctt
ttggagtggttgaaccctgagcctgtgaaccctcaatctgacacggcacatgacgcgttt
gttcccagtgatcccaggaggagtgggatcctggtgcactccttgttcccagtggagccc
tgcagcagcctggacgacgcccccatcacagactctctccgctgggttttgaagaagaag
cagggcagcgttttgactccagctcagcgctacagctggccctccgtggctcgaggctgc
cacaccgtcatcatctcgcccaacgcagagcagccgatcagctacatcgctccgctgctc
acacacatggtgctcaactccatctacaccgccgtcacctccagcgcagggcccatggcg
gtgctgctgtgtccgggctgggagaaagtgatggtgatgatggagcttctggaggagatg
aagctcaaatccgttctccacccctacactttgctgctgggcgtcgggaaagacgaggca
aaggccgtcaggatccccaaaaactgcctgctgctggtcaccactcccttcagtttggtg
cgtctgctgtcctgccactgtttcctgttcctgcgtctttaccacctggtgctggacgag
gccgaccagctcttcactcttgctccagatcagatggcgaccattttgcagcatttccag
aaagtgacctccagcgaagagaacacttcctgtccgcagcagctcatcgccgtggcaaag
agatggaccaatcacattgaggctctgttagccaattacatgccgtacccgtgcatcgtc
atggcgatccccgaagaggctgctctctatggcaacgttcagcagatcatcctcatgact
gtggagaacaataagatctcggtgctgctcggttcgttggatttcaactccgacgtcggc
cagaagacgctgatcgtagccaaatctgctcaggaggtggaggacgtgttcaaggccgtg
ggcagcaagtcagcgttctgcctcaaaacccacgaggggttaacgcaccagtttgacttc
gtggtccagcagtggaggaaagacatcggccccgggactcacgttattctggtgacctcc
agcgagtgtctgaagtgtttggggatcagagacgccacgtgtgtcgtccactacggcttc
cccacgtcccccaaagtgttcggcagccggctcttctgtatggccgaacacttcaggaac
ctttcagaccgggatcagacaggaagtcctcgcctcacccgctcggtcttgttgatttcg
gagaggaacgcctgtcacgtggtcggggttctgcggtatctggaacgcaccaacgccccg
ctgccccccgagctgctggacttcgctcggggcgtcaacacggcccgcgaggagcagaag
acccaccgacctctctgtggatacatcaagagcttcggagtctgcagagacagcagtgtg
tgtcccgatcgtcacaccttcgtctccgagctggatcagtctgtgcttcctgcctccgga
gtcatagaagtggttcctctctacattaagacggcgtccgtgttttacggccatatcgtc
aggaaggaggacggaggttttcagaacatggcgtcggagatgaaggatttctacgccgac
aagaagcccggagtggaggagattctggagggaggattattcgctgtgcaggaggacaac
ttctaccacagagtgaagatcctgtccgtccccgacagaggagaccggttgttctacgcg
gtgtttgtccgattcatcgatgtggggaaggagcaggaagtgaagtcccatcagatcctg
aagctcccggagaggtttcactctctgcccggccaggccgtggagatcatcgtgtgccgc
gtcaaaccagtggacgctgagaccgactggcacccaaaggtcaccagagcgatcagccag
aagatccgaggtcttcagcatcgagccagagccgtcttcagtctgggaaacacggtgttt
gttgatcccatggtccatatgacgcaggttccgggtatgaaaactgtgatcaatgagtac
accgtgcagtcggagatcctgagctcagggatggccgtcggtaaccccgaacatctggag
ctgctgaaggcgctgtgcatctctgggtctggaaatggttcggtgtctctggaggtccgg
atcaaagcggaggaggaagctttggctgaagccgtcagagcagccgagctcgctgacctc
cctcaactcgtgccctgtgagcctctcagtccagattcttccacgatccagtccctggtc
ccagtaacaccagtaccaccagtattggacctccacctggctccagtgagtgatcagaga
cccctgatggtcagccagtcagctgctggacagagaaacacacattcagctgatctgaga
ataaggatcgaagatggagaacttcaccccatgatcagcaagtctgtcctaatggagtgc
aggcagaatggtgtgtctacaggtgaggatgagagcagcagccagcagctcatcagcagt
aatgagacacactgtggtgacgccgttaaaagtttccaccctctggcccgctggtaccag
acgtccgactcattgatcgtgacgatgaaactgaaggagccgcagaaccagagctgcctc
ttcttccaggacagagtcgtgtacagtggcagagtgaacgagcgcacctacagagccgac
ctgcagcttcacgccaacatcgctccggaccgatgctgctgggaaatgaagtccaacgag
ccggtcctcaaactgtccaaacaacagccgggacactgggagaaactcctcaggaacaag
aatatctttgtgagttacgacgtggagcacattgtttttgagaatgaagacagaacccca
aacggtgtgcgtttccaggaaaacatggggggggacaacaactgctacgtggtgtcagag
agcggcagtgagagcgactaa
DBGET
integrated database retrieval system
