Trematomus bernacchii (emerald rockcod): 117479835
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Entry
117479835 CDS
T09643
Symbol
rfwd3
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RFWD3
KO
K15691
E3 ubiquitin-protein ligase RFWD3 [EC:
2.3.2.27
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tben04121
]
117479835 (rfwd3)
Enzymes [BR:
tben01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117479835 (rfwd3)
Ubiquitin system [BR:
tben04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117479835 (rfwd3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_RFWD3
Beta-prop_WDR5
zf-RING_2
Beta-prop_THOC3
WD40
zf-RING_UBOX
zf-C3HC4
WD40_CDC20-Fz
EIF3I
WDR55
zf-rbx1
zf-ANAPC11
Beta-prop_WDR3_1st
Beta-prop_EML_2
zf-C3HC4_2
zf-RING_5
WD40_Prp19
zf-RING_Vps41
zf-C3HC4_4
Rtf2
Beta-prop_WDR3_2nd
zf-C3HC4_3
Beta-prop_WDR75_1st
WD40_2
WD40_WDHD1_1st
Beta-prop_RIG_2nd
zf-RING_11
CFAP43_N
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_EIPR1
Beta-prop_WDR36-Utp21_2nd
NSRP1_N
zf-Nse
Motif
Other DBs
NCBI-GeneID:
117479835
NCBI-ProteinID:
XP_033982818
LinkDB
All DBs
Position
Unknown
AA seq
686 aa
AA seq
DB search
MEAMEVDSSLIILDSGSSTEVDEDDEDEVDQREQATARSPPRLPATWAFSQRAVGSAAQG
GPMRRRLRQGLRVHYPSQTAAPSRGFPDFLLRAPAASAAEPGSGSTTEISESEEEEEEEX
GGGQGAALEPLDPLVLPASPRLNAQHTQPQEAAPNNSSSAADGERTQAEHQDIQPLLAPP
APAPSSSQGEEGDVCSVCFEPWTTAGEHRLSALRCGHLFGFTCITRWLKAQGSAAKCPQC
NKKAKRSDIVLLYAPKLRALDNSEQEILKKSLEQEQSLRRKAELESAQYKLKLQVVTNKY
GQAQQELQELRAMMAGRVPVYSSSSSSSSASSSLLLGLSQSSRSAQYVFSKAILVSMAGG
SRVLSYCEPLSCLLASQPSPHSTLVPGCGVKKVSVVNMKASQYVPIHSKQIRGLSFNRQN
DSLLLSAALDNTIKLTSLLTNTVVQTYNAGKPVWSCCWCLDNSNYVYAGLSNGSVLVYDT
RDTSTHVQELQPLRSRCPVASLCYVPRAASSSFPCGGLIAGSLEGGCFWEQVNETTYRPH
LLPLETAGCTDIQVETESRHCLVTYRPGRSNPSLRCVLMSLTRTPQQDSSALPQVSVSPL
QSFSAGPSCKLLTKNAVFRSPGGAGGLVCAGDEASNSTMVWDASSGSLLQKLPADLPVLD
ISPFSVNGEHFLASLTEKMLKLYRWE
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggaggccatggaggtggactcctcgctcatcatcctggactccggcagcagcacggag
gtggacgaagacgatgaagatgaagttgatcagagagaacaggcgacggctcgatctcct
cccagacttcctgccacctgggccttcagccagagggcggtgggatcagctgctcaaggg
ggtcccatgcgcaggagactcaggcagggtctcagggtgcattaccccagccagactgca
gcgccctctagaggatttccagacttcctgctgcgagctccagctgcctcggcggctgag
ccgggctccggcagcaccacggagatcagcgagtctgaggaggaggaggaggaagagnnc
ggggggggtcagggagctgctctggagcccctcgaccccctagtgttgcctgctagccct
cgtcttaacgcccagcacacacaaccccaggaagcagctccaaacaattcaagttcagct
gcagacggtgagaggacgcaagctgaacatcaagacatacagccgctcctcgctcccccg
gctcccgccccctcgtcttcgcagggagaagaaggcgacgtctgctccgtctgcttcgag
ccgtggacgacagcaggcgagcaccgactctcagccctgcgctgcggacacctgttcggg
ttcacctgcatcacgcgctggctcaaagctcaggggtccgccgccaaatgtccgcagtgc
aacaagaaggcgaagcggtcggacatcgttctgctctacgcgcccaaactgagagcgctg
gacaactctgagcaggagatcttaaagaagtctctggagcaggagcagtctctgaggagg
aaggctgaactggagtcagctcagtacaaactgaagctgcaggtcgtcaccaacaaatac
ggacaagcacaacaagagctgcaggaactcagggctatgatggctggtcgagtcccagtt
tactcttcctcctcctcctcttcctcggcctcctcctcgctcctcctcggcctctctcag
agctccaggtcggcgcagtatgttttctccaaagcgattctggtgtctatggccggaggg
tccagagttctgtcgtactgcgagcctctgagctgcctgctggcctcgcagccctccccc
cactccactctggtgccaggctgtggggtgaagaaggtgagcgtggtgaacatgaaggcc
agtcagtacgttcccatccacagcaaacagatccgaggtctgtccttcaacagacagaac
gacagcttgctgctttctgcggctctggacaacaccatcaaactgaccagtctgctcacc
aacacggtggttcagacctataatgccggtaagcccgtgtggagctgctgctggtgtttg
gataacagtaactacgtctacgccgggctgagcaacggctccgtgctcgtctacgacacc
agagacaccagcacacacgtgcaggagctgcagcctctacgctccaggtgtccggtggcg
tctctgtgctacgtcccgcgggcggcctccagctcgttcccgtgcggcggtttgatcgcc
ggctctctggagggcgggtgtttttgggagcaggtgaacgagaccacctacagacctcac
ctgttgcccctggagacggccggctgcaccgacatccaggtggagacggagagccgccac
tgcctcgtcacctacaggccaggccgctccaacccctctctgcgctgcgtgctgatgtct
ctgacgcgcaccccccagcaggattcctccgcgctgccgcaggtctccgtctctccgctg
cagagcttcagcgccggcccctcctgtaaactcctcaccaagaacgctgtgttcaggagc
cccggaggagcgggggggctggtctgcgccggggacgaggcctccaactccaccatggtg
tgggatgccagcagtggttctttgcttcagaagcttccggcagatctcccggttttggac
atttctccgttttctgtgaacggcgagcacttcctggcatcgctcaccgagaagatgctg
aagctctacaggtgggagtga
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integrated database retrieval system
