Trematomus bernacchii (emerald rockcod): 117479881
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Entry
117479881 CDS
T09643
Name
(RefSeq) LOW QUALITY PROTEIN: spatacsin-like
KO
K19026
spatacsin
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04142
Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
117479881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tben03400
]
117479881
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
117479881
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
117479881
NCBI-ProteinID:
XP_033982880
LinkDB
All DBs
Position
Unknown
AA seq
2586 aa
AA seq
DB search
MMMMMMEESGSTEVCVIPENPHCVRVSELRRADLAPGGSLLLGCLRDRGLLEVLDPADRE
APPAEASGRYTDFCWEEEGGGRLLSVSSQFDLKLLEAERPSKISIRSEVPAERLLKTLRE
QDPGVCELQSLQVLCFSAGRGCLLLNSDWLLQLQWLQTDEQPQTISCCRIHTHTDDRHTH
SADSNTHTDDRHTHSPDSNTHTTDGHTYSADSNTHSPDSNTHSPDSNTHSPDSNTHSPDS
NTHSADSNTHTDDRHTHSADSNTHSPDSSTLSPNSNTHSPDGHIHSPDKDTHSPDGHIHS
PDSNTHSPDGHTHSSVHRCVCVVRETLFSLSSSGLISVCSLSDGRLLASINLPLYLSAAQ
PEEELLSSSSSSCVSSSSSFCLLQLSADLSTAVAVTESHSAAAVPLEHYFSLFPDHLLCA
TPPLRPPLRPLMQVDQDSLWSSSCSLSSLGSTFSTDRSWEARLSSMYSRAQPPPSSPSSP
SSSSPSPWSSSLPHLYSQSSSSHSRVPLGGATVSFSVPESSAPSLLTVTEFSAQLTFVSP
GNAETTVALWEMESGNVTQHRAEGEAAPVQRCGERQHRLLLKDSGVFQVLFSVSQEDLLS
RLMLFGSAATVDAVCHLNSWGRCSIPIHSLQAGLKNRQLDTVDFYLKSKENILNPQNDQP
PPQSLTHSFQELCSALDLLCSAVRESNSEAQSRQFSEQLLNITLSFINRQIRSVLTNTQH
EDLSVQVEVLDRYVTELRRYMKRFPWPVGGDTCSTNSAEAAPLQEEEEEREEEEDEWEKL
QTEEVVRRSILTNQIPRAQAVLRGRGLKEQRLSALRRRGLQEVFTCLQHRDLHTANTLLT
NMGFSVKQQLRSICLFTDDYDLRDFVVEELSGRRFLPEEEVQSVEFMKQMERLGSLPAAR
SAETPSHRGVQMVLREGGVGEEVLQELLLQRSEEEEGGGLWKTLRLDWVRNWDQSCRTAV
LLSRLPHTEVTSCDSALLWRYLTSLHDQRRIIDWIQNEDVNPELVNNNTSCSLFLREEIL
DLLARRGVLVQEELCDLQLLLWRLSQGGGVMSGSPSLPQYRSPLGLDLHSLFISFCVKHS
LHFLLYSYLQHHRLTPRNCPLLTNQSLSESEPWFEMMVKIQEISTDLSDPGLVFSASLSS
SQVLLPGSGASLSSLLLEGHSLLALASLMFSPGGIDQVASPGRAERTVDAQLLKMALTPH
PKLRSALFPPGPRGGGATSDVSVYHLLQALHPLDPCRLFGWQAANTLNSSDLSELPHFSS
SHLVSSFALMENLDFLYFLRHGRPSSAFATFLKQQLSGSCDVPLLLQQALQQVSRLAMQC
VCVSSITAACVCFYELLGVCSLKLRVDIRALHTVLQTHNTHSATHTQSAATQHLHNLGVR
LAEAEPGAAEQLIGCLEAAVTDSLEQRGVARSSYEAAQDWSLPVQFCQLHSLPLSSVYAS
HCAQDAHFINFLLFVQLHNFPPQQVRSLAAQFGPALQAHLSLAFQELQVFSQREGGGLSG
PQEQTPHREEAPHREEDLLLVLLKSQEEAVPDSFLLKEALEQRCPLLAVMAACQQGAELV
PCLCVWVLTSVDDVTFGEATSHLADAPPHHQWTLHDLSIIWKTLLGRGHVRPLLRGFSLF
QRDCPLVLVLQMFELCCDYRNFSEAKAKLLDFQRTLISMRSLPPGPEALLPLQWVESQAS
ELLLSTLQRCSSQYDLHRLLLLLRDVHKLLKSNGPDFRKLSELSELLQGSEVSLPPRLLQ
CTSPSVQQEELQAVVDALQEGGRFREARQGAMLGGLPTHTLLLTQLLQDVNSQKSKRQWS
RLETRVSLWRKCHDQLQADGIDPEPASLFFLSQTKKESGGAELLEVQECCLLLLLSSHWL
SRLVPAPRGRLESLEKQLWAERVRGRVLAGATEKQSVFNLSITQETTSSYELMVKEFCFS
NIPCMKEEEGLMAEEGLRAEEGLSTEMGLSKVEGLSMKEGLSKEEGLSMKEGLSMKEGLS
MKEGLSAEEGLSMEEGLSVEEGLSKVEGLSAEESLSTEELREEDTLSPEERCILGTLVDQ
LLDEGSIHEASRVCRYFSLQHGDMKLVLRCRGIASGDLRPQTEEEEEEEEDLQKKITSLP
SFSSLSSFVVLPLPEDQVAVQLQKLVDQCRHGNNFCRQVLSLYQLSKELQLSFRQIHSQD
PGSVLQNLLQSEQPERFRKARAFIKAQSLSAESVSGLLASSLMRALLDSSTELQPECQVF
RPAEGRDSLLSLIKLCNDPNLVGEKLLQNLSCVPLRELSCIVELLIVAHDCFSLTCNMEG
IVRVLQAARHLSHAHLAPREHYGLLVRLLTGIGRYNEMTYVFDLLHQNHRFEMLLRKKMD
TDRGQSSSLKTALLDYLKRCLPADSEKHNMVALCFSMRREIGENHEMAARTQLKIIESQA
WVVTPELKSSLVKVLGLLKDAAESFSKDSCVRQATRCVRTAKLVALQLHFLKQDSDLQLV
NLQPPELLSAVTALPSCYQVLVVAEAYGYSPDWPHILFQKVILSGDFVYLEDFKRLRPLT
SALFEDIFKKLDGAPCSVSNARRLLSHCEHVFSRYRLAYQQNLLDVSKALLQDTHSSGYL
RDRLAS
NT seq
7761 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatgatgatggaggagagcggctccacggaggtgtgtgtgatcccggagaac
cctcactgtgtccgggtgtcggagctccggagggcggacctggcccccggagggtcgctg
ctcctcggctgtctgagggaccggggcctcctggaggtcctggacccggccgacagagag
gctcccccggcagaggcgagcgggagatacacggatttctgctgggaggaggaggggggg
gggcggctgctgtctgtcagctctcagtttgatctgaagcttctggaagcagaaagaccc
tcaaagatctccatcagatctgaagttcctgctgagcgcctgctgaagaccctgagagag
caagaccccggtgtgtgtgagctgcagtctctccaggtgttgtgtttctcagccggccgc
ggctgcctgctgctcaactctgattggctgctgcagctgcagtggctgcagacggacgag
cagccgcagaccatctcctgctgcagaatacacacacacactgatgacagacacacacac
tctgctgacagcaacacacacactgatgacagacacacacactctcctgacagcaacaca
catactactgacggacacacatactctgctgacagcaacacacactctcctgacagcaac
acacactctcctgacagcaacacacactctcctgacagcaacacacactctcctgacagc
aacacacactctgctgacagcaacacacacactgatgacagacacacacactctgctgac
agcaacacacactctcctgacagcagcaccctctctcctaacagcaacacacactctcct
gatggccacatacactctcctgacaaagacacacactctcctgacggccacatacactct
cctgacagcaacacacactctcctgacggccacacacactcttctgtgcaccgctgtgta
tgtgtggtcagagagactctgttcagcctcagctcctccggactcatctctgtgtgtagc
ctcagtgatggccgcctgctggcctccatcaacctccctctctacctgtctgctgctcag
ccagaagaggagctgctctcctcctcgtcctcctcctgcgtctcctcctcttcctccttc
tgcctcctgcagctgtcggctgatctgagcacagctgtggccgtcactgagagccacagc
gccgccgccgtgcccctggaacactacttcagtctgttcccggaccacctgctgtgtgcc
accccccccctccgaccccctctgaggcccctgatgcaggtggaccaggactccctgtgg
agctccagctgcagcctctcttccctcggatccaccttcagcaccgaccgctcctgggaa
gctcgtctgtcttccatgtacagcagagcccagcctcctccctcctctccctcctctccc
tcctcctcctctccctccccctggtcctcctccctcccccacctgtactcccagtcctcc
tcctcccacagcagggtgcctctcggcggggcgaccgtctccttctccgtccccgaatcc
tcggctccgtcgctgctcaccgtcaccgagttctccgcccagctgaccttcgtctccccc
ggcaacgcggagaccacagttgcattgtgggaaatggagtccgggaatgtgacgcaacac
cgagcggagggggaggcggctccggtgcagcgatgtggagagaggcagcaccgcctgctg
ctgaaggactctggtgtgtttcaggtcttgttctcggtgtctcaggaggacttgctcagc
aggctgatgttgttcggcagcgcagccacggtggacgcagtttgtcacctgaacagctgg
gggcgctgttccatccccatccactccctgcaggcgggcctgaagaaccgtcagctggac
acggtggatttctacctgaaaagcaaagagaacatcctgaacccccagaacgatcaaccc
cccccacagagcctcacacacagtttccaggagctgtgctcggcgttggatctgctctgc
tcggcggtcagagagtcgaacagcgaggctcagagtcgtcagttttccgagcagctgctg
aacatcacgctgagcttcatcaacagacagatccgctcagtgctgaccaacacacagcac
gaggatctgagcgtgcaggtggaggttctggatcgctacgtcacggagctcaggagatac
atgaagaggttcccctggcctgtagggggcgacacctgcagcacaaactctgctgaggct
gcccccctgcaggaggaagaggaggagagggaggaagaggaggacgagtgggagaaactg
cagacggaggaagtggtgcggcgctccatcctgaccaatcagatacctcgggctcaggcg
gtgctgagggggcggggcctgaaggagcagcgtctgtctgctctgaggaggcggggccta
caggaggtgttcacctgtctgcagcacagagacctgcacactgccaacactctgctcact
aacatgggcttcagcgtaaagcagcaactccgcagtatctgcctcttcaccgacgactac
gacctgcgggacttcgtggtggaggagctgtcagggcggaggttcctccccgaggaggag
gtgcagagcgtggagttcatgaagcagatggagaggctggggtccctgcctgctgcccgc
tctgcagaaacaccttcacacaggggggtgcagatggtgctcagggaggggggtgttggg
gaggaggttctgcaggagctactgttacagaggagtgaggaggaagagggagggggcctc
tggaagaccctcaggctggactgggtcaggaactgggaccagagctgcaggacggctgtg
ctgctgtccagactgcctcacacagaggtgacttcctgtgactcggcgttgttgtggcgt
tacctgacgtctctccacgaccagcgccgcatcatcgactggatccagaacgaggatgtg
aacccagaactggtgaacaataacacatcctgtagcttgttcctgagggaggagatcctc
gacctactggccaggaggggggtgttggtgcaggaggagctgtgtgacctccagctgctc
ctgtggagactctctcagggagggggggtgatgtcaggttccccctccctccctcagtac
cgctctcctctgggtctggacctccacagcctcttcatctctttctgcgtgaagcacagc
cttcacttcctgctctacagctacctgcagcaccacaggttgacccccaggaactgtccg
ctgctgaccaatcagagcctgtctgagagcgagccctggtttgagatgatggtgaagatc
caggagatcagcaccgacctctcagatccaggcctggtgttctctgcctccctctcctcc
tctcaggtgttgttacctggctccggggcctctctcagctctctcctgctggagggccac
agtctgctggctctggcctccctcatgttctcccccggaggaatcgaccaggtggcgtct
ccgggccgggcggagaggacggtggacgctcagctgctgaagatggcgttgacccctcac
cccaaactgagatcagctctgttcccccccgggccccgaggaggcggagccacctccgac
gtctccgtctaccacctgctgcaggcgctgcatcctctggatccgtgccggctgttcggc
tggcaggcggcaaacaccctgaactccagcgatctgtcggagctgcctcacttctccagc
tctcacctggtgagcagcttcgctctgatggagaatctggacttcctctacttcctgcgt
catggccgcccctcctctgccttcgccaccttcctgaagcaacagctgagcggcagctgc
gacgtcccactgctcctgcaacaggctctccagcaggtgtcccgattggcgatgcagtgt
gtgtgtgtgtcgtcgatcaccgcagcgtgtgtgtgtttctacgagctgctgggagtctgc
agtctgaagctgagggtcgacatccgagcgctacacactgtcctgcagacacacaacaca
cactctgctacacacacacagtctgctgctacacaacacctgcacaacctgggtgtgcgg
ctggcggaggcggagcctggagcagcggagcagctgattggctgcctggaggctgcagtg
acggacagcctggagcagagaggcgtcgccaggtcctcctacgaggcggctcaggattgg
tcgctgccggttcagttctgtcagcttcactctctgcctctcagctctgtttacgcctct
cactgcgcacaggacgcacacttcatcaacttcctgttgttcgtccagctgcacaacttc
cccccccagcaggtgaggtctctggcggctcagtttggccccgccctccaggcgcacctg
agcctggccttccaggagctgcaggtgttcagccagagggagggaggggggctcagtggc
ccccaggagcagaccccccacagagaggaggccccccacagagaggaggatctgctcctg
gtgctcctgaagagccaggaggaggcagtgcccgacagcttcctgctgaaggaggcgctg
gagcaacgctgccccctgctggctgtgatggccgcctgccaacagggggcggagcttgtt
ccctgcctctgtgtgtgggtgttgacctctgttgatgatgtcacgttcggggaggccacc
tcccacctggccgacgcccccccccaccaccagtggactctgcacgacctgtcaatcatc
tggaagacgcttttggggcggggccacgtcagacctctgctgcgaggattcagcctcttc
cagagggactgtcctctggttctggtgctgcagatgtttgagctgtgttgtgactacagg
aacttctctgaggccaaagccaagctgctggacttccagaggaccctcatctctatgagg
agtttgcccccaggccctgaggctctcctccccctgcagtgggtggagagccaggcctcg
gagctgctgctctccacgctgcagcgctgctcctcgcagtacgacctgcaccgcctgctg
ctgctgctcagagacgtccacaagctgctgaagtccaacggtccggacttcaggaagctg
agtgagctgagtgagctgctgcaggggtcagaggtcagcctgcccccccgcctgctgcag
tgcacctcgccctccgtccagcaggaggagctgcaggcggtggtggacgctctgcaggag
ggggggcgattcagagaggcccgacagggggcgatgctgggggggctgccgacacacaca
ctgctgcttacacagcttctgcaggacgtaaactcccagaagtccaagcggcagtggagc
agactggagacgcgtgtttctctctggaggaaatgtcacgatcagctgcaggccgacggc
atcgacccggagccggcgtccctcttcttcctgtcgcagacgaagaaagaatccgggggg
gcggagcttctggaggtgcaggagtgctgcctgctgctcctcctctcctcccattggctg
tccagactcgtcccggctccaaggggccgcctggagagcctggagaagcagctgtgggcg
gagagggtgagggggcgggtcttagccggcgccacggagaaacagagcgtcttcaacctg
tcaatcacccaggagacgacctcatcatacgagctgatggtgaaggagttctgcttctcc
aacatcccatgcatgaaggaggaggagggcctcatggcggaggagggcctcagggcggag
gagggtctcagcacggagatgggtctcagcaaggtggagggcctcagcatgaaggagggc
ctcagcaaggaggagggcctcagcatgaaggagggcctcagcatgaaggagggcctcagc
atgaaggagggcctcagcgcggaggagggtctgagcatggaggagggcctcagtgtggag
gagggtctaagcaaggtggagggcctcagtgcggaggagagtctgagcacggaggagctg
cgtgaggaggacacgctgagtccagaggagaggtgcatcctgggaacgctggtggatcag
ctgttggatgaagggagcatccatgaggccagcagggtgtgcaggtacttctctctgcag
cacggagacatgaagctggtgctgcgctgcagggggatcgcctctggagacctgaggcca
caaacagaggaggaagaggaggaggaggaagatctgcagaagaagatcaccagcttgccc
tcgttcagcagcctctcgtccttcgtggttctccccctccctgaagaccaggtggccgtg
cagctgcagaaactggtggatcagtgccggcacggaaacaacttctgcagacaagtcctc
agcctctaccagctctccaaggagctgcagctgtccttcaggcagatccacagccaggac
ccgggctcggttctgcagaatctgctgcagtcggagcagccggagcgtttcaggaaggcc
cgagcgttcattaaggctcagagcctatcagcagagagcgtgtcggggctgctggcctcc
agcctgatgagggcgctgctggactccagcaccgagctgcagcccgagtgtcaggtgttc
aggccggcagaggggcgggactccctgctgtcactcatcaaactctgtaacgatccaaac
ctggtgggagagaaactgctgcagaacctgagctgtgttcctctgagagagctgagctgc
atcgtggagcttctgatcgtggctcacgactgcttcagcctcacctgcaacatggaggga
atcgtccgagtgctacaggccgcccgacacctgagccacgcccacctggccccccgagag
cactacggcctgctggtgcgtctcctcacagggatcggcaggtataatgagatgacgtac
gtcttcgacctgctgcatcagaaccatcgcttcgagatgctgctgaggaagaagatggac
acagacagaggacagagctccagcctgaagacggctctgctggattatctgaagcgatgc
ctccctgctgacagcgagaaacacaacatggtggcgctgtgcttcagcatgaggagggag
atcggagagaaccacgagatggccgcccgaacgcagctgaagatcatcgagtcccaggcc
tgggtggtgactcctgagctgaagagttctctggtcaaggtgctgggtctgctgaaggac
gctgcagagagcttctccaaggactcgtgtgtgcgtcaggcgactcgctgcgtgcggaca
gcgaagcttgtggctctgcagcttcacttcctgaagcaggactcagacctgcagctcgtc
aacctgcagcctccggagctgctgagcgccgtcaccgcgctgccgagctgctaccaggtt
ttggtggtggccgaggcgtacggctacagtccggactggcctcacattttgttccagaag
gtgatcctgagcggagactttgtttacctggaggacttcaaacgcctccgccccctcacc
tccgccctgttcgaggacatcttcaaaaagctggacggggctccctgcagtgtctctaat
gctcgccgcctgctctctcactgtgagcacgtgttcagccgctacagactggcctaccaa
cagaaccttctggacgtcagcaaggctctgctgcaggacacacactcctctggatacctg
agggaccggctggccagctga
DBGET
integrated database retrieval system
