Trematomus bernacchii (emerald rockcod): 117479890
Help
Entry
117479890 CDS
T09643
Name
(RefSeq) LOW QUALITY PROTEIN: neural cell adhesion molecule 1-like
KO
K06491
neural cell adhesion molecule
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
tben04514
Cell adhesion molecule (CAM) interaction
tben04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
117479890
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
117479890
04517 IgSF CAM signaling
117479890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117479890
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117479890
04090 CD molecules [BR:
tben04090
]
117479890
00536 Glycosaminoglycan binding proteins [BR:
tben00536
]
117479890
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
tben00537
]
117479890
04091 Lectins [BR:
tben04091
]
117479890
Membrane trafficking [BR:
tben04131
]
Exocytosis
Tethering complex
Exocyst complex assembly proteins
117479890
Cell adhesion molecules [BR:
tben04515
]
Immunoglobulin superfamily
NCAM1/2
117479890
CD molecules [BR:
tben04090
]
Proteins
117479890
Glycosaminoglycan binding proteins [BR:
tben00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
117479890
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
tben00537
]
Others
117479890
Lectins [BR:
tben04091
]
I-type lectins (Siglecs)
117479890
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
FN3_DSCAM-DSCAML_C
V-set
Pur_ac_phosph_N
C2-set_2
Ig_PDGFR_d4
V-set_CD47
C2-set_3
fn3_2
Motif
Other DBs
NCBI-GeneID:
117479890
NCBI-ProteinID:
XP_033982896
LinkDB
All DBs
Position
Unknown
AA seq
975 aa
AA seq
DB search
MLQIRDLIWGLLFIGCAAAIQVQITPTQGEISVGESKFFLCEVTGDAKDIDWYSPSGEKI
LPNRPDIIVSRGDETMSTLTIYHANVDSAGIYKCVAKNGDKEAQATVQVKIFQKITFESA
PSPQEFNEGDDAAIVCNVISSPPPSIIWKHKGSKIQAAKDVRFKILDNGHLQIRGIKKID
EGMYNCEARVMARGEIDFKMIKVVVNVLPTIRARVSDVNATADNSASALLACDADGFPEP
TVTWAHNNIVLETGDKYSLNEDGSELVIKDVKKVDEGDYTCIAKNKAGEKSEEVSLNVFV
QPKITYLSNQTASEFDEQVTLTCEASGDPTPSISWSFETRVFTEGEQSLDRNIVVRSHAR
VSSLTLKNVLFTYAGKYLCSAGNSIGQDEQHMFLEVRYAPKILGSVTVYTWERNSANISC
EVEAHPGAAVLWFRDGLQLPSTNTTNVKIYNTPSVSYLEITPDSQNDFGSYNCTASNAMG
SESKEFLLIQAEVPSSPEIQQVDPFSSTAVVSFEEPDSMGGVPIIRYRVEWRLIGQDWKS
MEHDAKDDLISITIAGLKPETTYEVKMSAINGKGEGESSAVSSFTTEPVQYSFTISSETP
PPIAATSLALSEYAEGEPSAPKLEVKVLERGNSLKVNWIKQDDGGSPIKHYLVRYKAKHV
SEWKPEIRMPDSSDHATLSGLDWNTEYEVYVVAENQQGKSEPGVVSFRTASDPTTIPDAA
TGGSGMGTGAIVGILIVVFFLLLVGVDVTCYFLNKCGLLMCIAVNFCGKAGPGAKSKDIE
EGKAAFTKDESKEPIVEVRTEEENTPNQGGGPTEPNETTPLTDPEPPAADSTSSPVVNVP
PPSTANNSESFSTAQSSPVSESTTISPTKAPPKNSPPIKTSDSNANPQPDVGPLVDLSET
PKVSEAPSTDSQVDGPNEDAPKAPSTDSNTPAQNDGKIVKDGNTKVGETEVKNATAEVKT
VPSEAPQTNGNESKA
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgctgcaaataagggacctcatctggggattgctattcattggctgtgcagccgccatc
caggtgcagatcacgccaacacagggagagatcagcgtgggagagtccaagttcttcctc
tgcgaagtgacgggagatgctaaagacatcgactggtactcccccagtggagagaagatc
cttcccaacaggccggacatcatcgtgagccgcggagatgaaaccatgtccacgctcacc
atctaccacgccaacgtggacagcgccggcatctacaagtgtgtcgccaagaacggagac
aaggaggcgcaggctacggtgcaagtgaagatcttccaaaagatcacctttgagagcgcc
cccagccctcaggagtttaacgaaggcgatgacgcggccatcgtctgcaacgtgatcagc
tctcctcctcccagcatcatctggaaacacaaaggctccaagatccaggctgccaaagac
gtgagatttaagatcctggataacggccacctgcagatccgcggcatcaagaagatcgat
gagggcatgtacaactgcgaggcgagagtcatggcccgcggagagatcgacttcaagatg
atcaaggtcgtcgttaatgtgctccccaccatcagggcgagggtctccgatgtgaacgcc
accgcagacaactctgcctccgccctgctggcctgcgacgccgacggcttccccgaaccc
accgtcacctgggcacataacaacatcgtccttgaaaccggcgataagtacagcctgaac
gaggatggttctgaattggtaataaaagatgtcaagaaagtggatgaaggagattacact
tgcatcgccaagaacaaggcgggagagaaatccgaggaagtgagcctgaacgtgttcgtg
caacccaagatcacgtacctgagcaaccagacggcctcagagttcgatgagcaggtgacg
ctgacctgcgaggcctcaggagaccccaccccctccatctcctggagcttcgagacccgc
gtgttcaccgaaggagagcagagcctcgacagaaacatcgtggtccgcagccacgcccga
gtgtcctcgctcacgctgaagaacgtcctgttcacgtatgccgggaagtacctctgcagc
gccgggaactccatcggacaggacgagcagcacatgttcctggaagtccgctatgctcct
aagatcctgggctcggtgacggtgtacacgtgggagcggaactcggccaacatcagctgt
gaggtggaggctcaccctggagccgccgtgctgtggttcagagacggcctgcagctgccc
tccaccaacaccaccaacgtgaagatctacaacacgccctccgtcagctacctggagatc
actcctgattcccagaatgacttcggcagctacaactgcaccgcctccaacgcgatgggc
tctgagtccaaggagttccttctgatccaagcagaggtgccatcctctccagagatccag
caggtggaccctttctccagcaccgcggtggtgagctttgaggagcctgactccatgggg
ggggtccccatcatcagatacagggtggagtggcgtctgattggccaggactggaagagc
atggagcacgacgctaaagacgacctgatcagcatcaccatcgctggcctgaagccggag
accacctacgaggtcaagatgtccgccatcaacggaaaaggagaaggcgagagcagcgcg
gtgagcagcttcaccaccgagcccgtccaatattctttcacaatttcctcagagacccct
cctcctattgctgccaccagtttggcccttagtgagtatgccgaaggggaacctagtgca
cctaaactggaggtgaaggtcctggagaggggcaactctctgaaggtgaactggatcaag
caggacgacggcggatcccccatcaaacactacctggtccgatacaaggctaagcacgtg
tctgagtggaagccagagatccgaatgcctgacagcagcgatcacgcaacgctgagcggc
ctggactggaacacggagtacgaggtgtacgtggtggccgagaaccagcagggaaaatca
gagccgggtgtcgtctccttcagaaccgccagcgaccctaccaccatcccagacgcagcg
accggaggttcaggtatgggcaccggcgccatcgtgggcatcctcatcgtggtcttcttc
ctgctgctggtgggcgtggacgtcacctgctacttcctgaataaatgtggcctcctcatg
tgcatcgccgtcaacttctgtgggaaggccggcccgggggccaagagcaaagacatcgag
gagggcaaggccgcgttcacgaaagatgagtccaaggagcccatcgtggaggtgagaacg
gaagaggaaaacactcccaaccagggggggggtcccactgagcccaacgagaccacgccc
ctcacagatcctgagcctcctgctgcagactccacttcctccccggtggtgaacgtgccc
cccccctccaccgccaataactctgagagctttagcacggcgcagagcagtccggttagc
gagagcaccaccatcagccctaccaaagcccccccaaaaaacagccccccgatcaaaacc
agtgattctaacgctaacccccagcctgatgttgggcccctggtcgacctgagcgaaacc
cctaaagtctcagaggccccgagtacggactcacaggtagacggcccgaacgaggatgca
cccaaagccccgagcacagactccaacacaccggcccaaaatgacggtaagattgtgaag
gatggaaacactaaagtgggcgagacggaggtgaagaacgccacggccgaagtgaagacg
gtccccagcgaggccccgcagacgaacggcaatgaaagtaaagcgtaa
DBGET
integrated database retrieval system
