Trematomus bernacchii (emerald rockcod): 117479987
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Entry
117479987 CDS
T09643
Symbol
vps35
Name
(RefSeq) vacuolar protein sorting-associated protein 35
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117479987 (vps35)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117479987 (vps35)
Membrane trafficking [BR:
tben04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
117479987 (vps35)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
117479987
NCBI-ProteinID:
XP_033983009
LinkDB
All DBs
Position
Unknown
AA seq
797 aa
AA seq
DB search
MPTSQSPQDEQEKLLDEAVQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPK
SYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVRS
FPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDDGEQPEGTEEMTGDINDS
IDFVLLNFAEMNKLWVRMQHQGHSRDREKREKERQELRILVGTNLVRLSQLEGVNVEKYK
QIVLSGVLEQVVNCRDSLAQEYLMECIIQVFPDEFHLQTLNPFLRSCADLHQHVNVKNII
IALIDRLALFAHREDGPGIPAEIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAM
KCYPDRVDYVDKVLESTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNVLTVLQLK
HFPPLFEYFDFESRKSMSCYVLSNTLDYNTTILAQEQVDAILSLVSTLIQDQPDQPADDP
DPEDFAEEQSLVGRFIHLLHSEDPDQQYLILNTARKHFGAGGNLRIRYTLPPLVFAAYQL
AFRYKENSSSDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENH
ETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMRCFSEENHEPLRTQCALAASK
LLKKPDQCRAVSICAHLFWSGRSTEKNGEEIRDGKRVMECLKKALKIANQCMDPSLQVQL
FIEILNRYVCFYERENDAVTVQVLNQLIQKIREDLPNMEASEETEQINKHFQNTLEHLRL
QRESPEAEGPAYEGLVL
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgcccacctcgcagtctccccaggacgaacaggagaagcttctggatgaagcggtgcag
gctgtgaaggtccagtccttccagatgaagcgatgcctggacaagaacaagctgatggat
gccctgaagcacgcctccaacatgctgggggagctccggacctccatgctgtctccaaag
agctactatgagctctacatggctatctctgatgaactgcactacctggaagtgtatctg
actgatgagtttgccaaaggacgtaaggtggcagatctgtatgagctggtgcagtacgca
ggcaacatcatccccagactctacctgctcatcactgtgggggtggtgtacgtgcgctcc
ttccctcagtcccgtaaggacatcctgaaggacctggtggagatgtgtcggggggtccag
caccctctcaggggcctcttcctcaggaactacctcctgcagtgcacccgcaacatcctg
ccagacgatggagagcagccagagggaacagaggagatgactggtgacatcaacgactcc
atcgactttgtcctgctcaactttgctgagatgaacaagctgtgggtgaggatgcagcac
cagggacacagccgagaccgagagaagagggagaaggagcggcaggagctgaggatcctg
gtgggaaccaacctggtgcgcctcagccagctggagggggtcaacgtggagaagtacaaa
cagattgttctctcaggagtgctggagcaggtggtgaactgcagagactctctggctcag
gagtatctcatggagtgcatcattcaggttttcccagacgagttccaccttcagaccctc
aaccccttcctgcgctcctgtgctgatctccaccaacacgtcaacgtcaagaacatcatc
atcgccctcattgacagactggctctgttcgctcatcgagaagacgggcccggcattcca
gctgagatcaaactgttcgacatcttctctcaacaagtagccaccgtcattcaatctcgc
caggacatgccctcagaggacgtggtctctctgcaggtttctctcatcaacctggccatg
aagtgctaccctgaccgtgtggactacgtagataaagtcctggagagtactgtggagatc
ttcaacaagctcaacctggaacacatagcgactagcagcgcagtgtccaaggagctgacc
cgcctgctgaagatccccgtggacacctacaacaacgtcctgacggtgctgcagctcaaa
cacttccctccgctcttcgagtacttcgacttcgagtcacgcaagagcatgagctgctac
gtgctgagcaacacgctggactacaacaccaccatcctggcccaggagcaggtggacgcc
atcctgtccctggtatccacactgatccaggaccagccggaccaacccgctgatgaccct
gacccagaggactttgctgaggagcaaagccttgtgggacgtttcatccacctgctccac
tctgaggatccggatcaacagtacctgatcctgaacacagcccggaaacactttggtgcg
ggggggaacctgcggatccgctacacactgccccccctggtgttcgctgcctaccagctg
gccttcagatacaaggagaactcttcatcggatgacaagtgggagaagaagtgtcagaag
atcttctcgttcgcccatcagaccatcagtgctcttatcaaggcggagctggccgagctg
cctctgcgcctcttcctgcagggggcgctggccgcaggggagatcggctttgagaaccac
gagactgtagcttatgagttcatgtcccaggccttctctctgtacgaggatgagatcagt
gactccaaagcgcagctggcagccatcacgctgatcatcgggacctttgagcggatgcgg
tgtttcagcgaggagaaccacgagcctctgaggactcagtgtgcgctcgctgcctccaaa
ctgctgaagaagcccgaccagtgccgggccgtcagcatctgcgctcacctcttctggtcc
ggacgcagcaccgagaagaacggggaggagatccgcgacggtaagcgtgtgatggagtgc
ctaaagaaagccctgaagattgccaaccagtgtatggacccctcgctgcaggtccagctc
ttcattgaaatcctcaacagatacgtctgcttctatgagcgggaaaacgatgcggtcact
gtccaggtattaaaccagctcatccagaagatcagggaagatctccctaacatggaggcc
agcgaggagacggagcagatcaacaaacacttccaaaacacactggagcacctgcgactg
cagagggagtcccctgaggccgaggggcccgcctatgagggcctggtgctttaa
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