Trematomus bernacchii (emerald rockcod): 117480100
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Entry
117480100 CDS
T09643
Symbol
arid1aa
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117480100 (arid1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117480100 (arid1aa)
03021 Transcription machinery [BR:
tben03021
]
117480100 (arid1aa)
03036 Chromosome and associated proteins [BR:
tben03036
]
117480100 (arid1aa)
Transcription factors [BR:
tben03000
]
Eukaryotic type
Helix-turn-helix
ARID
117480100 (arid1aa)
Transcription machinery [BR:
tben03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117480100 (arid1aa)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117480100 (arid1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
117480100
NCBI-ProteinID:
XP_033983169
LinkDB
All DBs
Position
Unknown
AA seq
2435 aa
AA seq
DB search
MAAQVASAATLNTSPPSELKKPDRDPKEDSVPGEKQSDKKQPGLGSGSPGRGDLQDGADG
GNAGGGGEPEMKNGNGNPPRANNNNQNDSVGPEGNNHPGLVHHHGTAFPPPSYGYSQHYG
RAPFHQHGGQQSPGMAAAAGPVVQSSNMMEPYQPNSHEHGFSNHQFNNYNQFPNRTPYPG
QAYGMNSPRSTQAPTAGGQPANVKQQPPAGGPTPTPTPTAMAGTYSNQRYNIGNPQPTST
PTLNKLLTSPSSTRGYPNYPSNDYSSQEGATKGPADMASSGLYGGSNPAWQQRSLHPSPM
SPGSAGQPLARSQPPGPIDPMGKMRGQPYGAGSPYSQQSQQGPPTGPQQGPGYPGQGYGP
PGPQRFPVGMQGRSPGAMGSVPYGPQMGSYGQQGPGGYGSQGQAPYYNQPGQAPHPSQQQ
TPYSQTPPGQPGGQAPYPGQTHPAPTSASHTQGGQPYQQPPQSQGPLPGPSQGPTQSQPP
YSQSSAPQSGQSLYAQQQGPPSQAPQQPSSQEPPGSQGQSNYPGSTQGPQQPPSQQPQPQ
PQPQTQPQPQTQPQTQTQPQTQPQTQTQPQPQPPQQPPGHSQHPQGQPAAYSQNPQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQQQQQQQQQQAQQSPYQRFPPPPQQEVSQDSFQSNAPPSTQPKSGPEDSQGRPSSL
PDLSGSIDDLPTGAESALSPGVSTSGVSSSQGEQSNQAQSPFSPHTSPHLPGIRGPSPSP
AGSPAGASTPRTGPLSPANMPGTQMPPRPSSVHSDGSLHPAMSQSPMAQDRGFMQRNPQM
PPYGSPQSASALSPRQSSGGQMHPGIGPYQQNNSMGGYGQQGGQYGPQGYPRQPGYGNMP
NANYTGPGMGPMNAMAGQGGGPPYAGMPPGRMPPHQMGPRPYGPNMGPNMGPNMGPNMAP
NMAPNMAPNMAPNMAPNMGPNMGPNMGPNMGPNMGNMPPQVGSGMCPPPGMNRKPQDPSA
MQHPATNSMHNRMPGYANMSPGMMGSGPPYGPPMNNMPGMMNPQGGSPYPMGPNMANNSS
GMAPSPEMNNKMNNKVDGGATPKPEPKSKKSNSSTTTNEKITRLYELGPEPERKIWVDRY
LAFVEEKAMPMTNLPAVGRKPLDLFRLYMSVKEIGSMAQVSKNKKWRDLATSLNVGTSSS
AASSLKKQYVQCLYAFECKIERGEDPPPEIVTDNKKNQAAKVQPPSPASLCSTAGSGSLQ
GPQTPQSTSSSMAEGGDLKPPTPASTPHTQMPPMTPGSRSSVNLQDPFSEGSDPAFPRKN
LTPNSAYQSGMNPADVQGRMGSFEPNKDPFGNMRKVGEHFLPANPGPNSGVGDHQQQQPP
QPQQQQHQPPFNRGPPGAIGTMPMGPRQQYPYGPGYDRRSEPGMGPEGNMGSGAPQPNPM
MPANADAGMYSPNRFPPQQPRHDSYGNQYPGQGTPPGGSYQNQPPGMYPQQQGYKRPVEG
GYPPSKRHEAEYSGPFHGGQQPPQQQQQPGGAPAPSSGQQESYNQYSGSGPYPGPDRRPP
GPGNQFPFPFGRERMPGSTGPNAQPNMPPQMMQPGPEGPQGGMWQGPRDMNYQNYPGRQG
GPPQGPGYPGMNRSEEMMSSEQRMNHDGQWGSQMGPRQPSYGPAGPGQPMPRPVQSTYQS
LQGVQNHIPQVSSPASMPRPMDSRTSPSKSPYMHGVMKMQKAGPPVPASHIVPPPVQSPL
IRRDMPFPPGSIEASHPILKPRRRLTVKDIGTPEAWRVMMSLKSGLLAESTWALDTINIL
LYDDNSISTFELNTLPGLLELVVEYFRRCLIEVFGILREYEVGDPGQRTLLDPDALKQDW
DKEGEELQAEDMEQEDGDEDEDEEEEQETEAPVRVKEEEEQCSESQAQGEKTEDEDRKNK
GSSSDQTGSSQSLAAHERPQQASKFDKFPLKVIRKKDPYPANNNHGKMQEFDSGLIHWSA
GGGDSTEHIQTHFEPRKDFLEPRQRICVPSKLLKQRVPEVHLENSLLTDEEERKNQEEEE
RSKETSSSEKAAEAEKTSPSLDNEEERKNDSETKTVEKVDHQENNRPIPSLDILFTPRAK
QTGIILEDEPHSKDEGPLIALANWQDSLARRCICISNIVRSLSFVPGNDHEMSKHPGLLL
LLGRLILLHHRHPERKQAPLTYEKDEDSEEGMGQRDEWWWDCLELLRENTLVTLANISGQ
LDLSIYPESICLPLLDGLLHWAVCPSAEAQDPFPSLGPHSALSPQRLVLETLSKLSIQDN
NVDLILATPPFSRLEKLYGNLVRLIGDRKVAVCREMAVVLLANLAQGDTVAARAIAVQKG
SVGNLLGFLEDSLAATQLQQSQSSLLHLQGMHFEPTSPDMMRRAARALHALAKVEDNHSE
FTLQESRLLDLSVSPLMNSLVSHVICDVLFLVGQS
NT seq
7308 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgccgccactcttaacactagcccgccttccgaacttaaa
aagccggatcgagaccccaaggaggattcggtaccgggggagaagcagtcagacaaaaag
cagccgggcttgggcagcggatcgccgggccggggggatctgcaggacggggccgacggt
ggaaatgcagggggaggaggggaacctgagatgaagaacgggaatgggaacccgcccagg
gctaacaataataaccagaatgactctgtcggaccggagggaaataaccatcccggtttg
gtgcatcatcacggcaccgcgtttcctcctccttcgtacggatatagtcagcactacggt
cgggccccttttcatcaacatggcggacaacaaagccctggcatggcagctgctgcgggt
ccggtcgttcagtcgagcaacatgatggagccgtatcaacctaattcacacgagcatggc
ttttcaaaccaccagtttaacaattataaccagtttccgaacagaactccctatccgggc
caagcgtacggtatgaactcccctcgcagtacccaggcgccgacagctggggggcagcca
gctaacgttaagcagcagccacccgcgggaggaccaacaccaacaccaacaccaacagca
atggctggaacttacagtaatcagagatataacattgggaaccctcaaccgacatcgaca
ccgacactcaacaagctcctgacctcccccagctctacgcggggttatccaaactacccg
tctaacgactacagcagccaggagggagctactaagggaccagcagacatggccagcagc
gggctgtacggagggagcaacccggcctggcaacaaagaagccttcacccgtcgcctatg
agcccgggaagtgcagggcagccgctcgctagaagccagccacctggtcctattgaccca
atggggaaaatgagaggtcaaccatatggagcaggcagtccatacagtcagcagtcacag
caagggcctcccacaggtccacaacaggggccaggttaccctggtcagggttatggccct
ccaggtcctcaaagatttccagtgggaatgcaaggacgttcacctggagccatgggtagt
gtgccgtatggtcctcagatgggatcttatggacagcagggaccaggaggctatggctct
cagggccaggctccgtattacaaccagcccggccaggctcctcacccgagccagcagcag
actccttactcccagaccccaccaggacaaccggggggccaggcgccttacccagggcaa
acccaccctgcaccgacttctgcttcacacacccagggaggacaaccttatcagcagccc
ccacaatcccaggggccgctgccaggcccgtcccaagggcctacacagtctcagccacct
tattcccaatcctcagccccacaatctggccagtctctctacgcccagcagcagggtcct
cccagtcaggccccgcagcagccaagttcccaggaacccccaggatcacagggccagtcc
aactacccagggtccacacaggggcctcagcagcccccctcgcagcagccgcagccgcag
ccacagccccagacccagccccagccccagacccagccccagacccagacccagccccag
acccagccccagacccagacccagccccagcctcagcctccacagcagccaccaggacac
agccaacacccacagggccagcctgcagcgtactcgcagaaccctcagcagcagcagcag
cagcagcagcagcagcagcagcagcagcaacaacaacaacaacagcagcagcagcagcag
cagcagcagcagcaacaacaacaacaacaacagcagcagcagcagcagcagcaacaacaa
caacaacaacaacaacagcagcagcagcagcagcagcaacaacaacaacaacagcagcag
cagcaacaacaacaacaacagcagcagcagcagcagcagcaagcacaacagtcaccttat
cagcggtttcctcctccaccacagcaggaggtatcgcaggactcatttcagtccaacgcc
cctccatccactcagcctaaatctggcccagaggacagtcaaggccgcccctccagcctt
ccggacctgtcggggtccatcgatgacctgcctacaggtgcagagagcgccctgagcccc
ggtgtgagcacgtcaggtgtgtcgagcagccagggcgagcagagtaaccaggctcagtcg
cccttctctcctcatacgtctccccacctgccaggcatccgagggccttcaccttcacca
gctggctcccctgccggtgccagcacgccccgcacaggaccgctgtcacccgccaacatg
ccagggacccagatgcctcccaggccatcgagtgtgcattcagatgggagtctacatcct
gcaatgagccagtctcccatggcgcaggacagagggtttatgcagagaaaccctcagatg
cccccttatggctccccccagtcagcctctgcactgtccccgcgacagtcctcaggggga
cagatgcatcctgggataggcccatatcagcagaacaactccatgggtggttatggacag
caggggggacaatatggcccacaaggttatccacggcaacctggctatggaaacatgccc
aacgcaaactacactggtccgggcatgggcccaatgaatgccatggcaggacagggtggg
ggaccgccgtatgccggcatgccccccggaaggatgcctcctcatcaaatggggccacgt
ccctatggcccaaacatgggtccaaacatgggtccaaacatgggtccaaacatggccccc
aacatggcccccaacatggcacccaacatggcacccaacatggcccccaacatgggtccc
aacatgggtcccaacatgggtcctaacatgggtcctaacatgggcaacatgcccccccag
gtaggctcaggcatgtgccctcctccaggcatgaacagaaagccccaggacccctctgcc
atgcagcatcctgccaccaactccatgcacaacaggatgcctggatacgccaacatgtct
ccaggaatgatgggctccggcccaccctatggccctcctatgaacaacatgcctggaatg
atgaaccctcaaggtggatcaccttatcccatggggccgaacatggccaataactcaagt
ggtatggcccccagtccagaaatgaacaataagatgaataataaagtagatgggggtgca
acacccaagccggagcccaaatccaagaagtccaactcttcgaccactaccaatgagaag
ataacccgtctgtatgagttaggaccggagccggagagaaagatctgggtggaccgatat
ttggcttttgtggaagaaaaagccatgccgatgaccaacctgcccgctgtgggccgcaaa
ccccttgatctcttccgactgtatatgtcagtcaaagagatcggaagcatggcacaggtg
agtaagaataagaaatggcgcgatctggccacatccctgaatgtgggtacatccagcagt
gctgccagttctttgaagaaacagtacgtccagtgtctgtacgcctttgagtgcaaaatt
gagcgaggcgaggaccctcctcctgagattgtgacagacaacaaaaagaaccaagctgct
aaggtccagccaccctctccagcgtccctctgctccacagctgggtcaggctctctgcag
ggtccacagacaccccagtccaccagcagctccatggctgaggggggggaccttaaacct
cccaccccagcctccactcctcacacccagatgcccccaatgacacccgggtccaggagc
agcgttaacctgcaggaccccttctctgaaggaagcgaccctgctttccccaggaaaaac
ctgacgcccaactctgcctatcagtccggcatgaacccggcggacgttcaggggcgcatg
ggctccttcgaacccaacaaggacccctttggtaacatgcgcaaagtcggggaacacttc
ctaccagctaacccaggccctaacagcggggtgggtgaccatcagcagcagcaaccgcca
caaccacagcagcagcaacatcagcctccattcaacagaggaccgcctggggccataggc
acgatgcccatggggcccagacagcagtatccctatggaccaggctacgacaggagatcg
gagccgggaatgggcccagagggcaacatgggatccggggctcctcagccaaaccctatg
atgcctgccaatgccgacgcagggatgtattcgccaaatcgcttcccaccacagcagcca
cggcatgattcctatggtaatcagtatcctggacagggaacgccccctggaggctcctac
caaaatcagccgcctggaatgtacccacaacaacagggttacaagcgtcctgtggaaggg
ggttatcctccatcaaaacgtcatgaggcggagtacagtgggcccttccatggcggacaa
caacctccgcaacagcagcagcagccaggaggggcccctgcaccctcttcaggacagcaa
gagtcgtacaatcagtacagcggcagcgggccctaccccggccctgatcggcgtccacct
ggcccaggcaatcagttcccattcccatttggccgtgaacgtatgccgggttcgacgggg
cccaacgctcagcccaacatgccccctcagatgatgcagccaggtcccgagggtcctcag
ggaggtatgtggcaggggccgcgagacatgaactatcagaactaccccggtcggcagggc
ggcccaccccagggacccggttaccctggcatgaaccgctcggaggagatgatgtcgtca
gagcagcgcatgaatcacgatggccagtgggggagtcagatgggccctcggcagccttct
tatggtccagccgggcccggccagccaatgcctcgcccggtacagtccacctaccagtcc
cttcagggggtgcagaaccacattccacaggtgtccagccccgcctccatgccccgcccc
atggatagcaggacatcaccgagtaaatctccctacatgcacggagtcatgaagatgcag
aaggccggccctccagtgcctgcgtctcacatagtgccccctccggtgcagtcgccccta
ataaggcgagacatgccttttcccccgggctctatagaagcctcccatcctatcctgaaa
ccacggcgaagactcaccgtaaaagatattggaaccccggaggcctggagagtcatgatg
tctctaaagtctggtttgttggctgaaagtacatgggccttagacaccatcaacatcctc
ctgtatgatgacaacagtatttccacctttgagctcaatacgttacccggcctactggag
ttggtggttgagtatttcagacgctgcctcatcgaagtctttggcattctgcgggagtac
gaggtgggagaccctggccagaggacactacttgatcctgatgccttgaaacaagactgg
gacaaagaaggagaggagcttcaagctgaggatatggaacaagaggacggagacgaggac
gaagatgaagaggaagaacaagaaacagaggctccagtgcgtgtgaaagaagaggaagag
cagtgctctgagtctcaggctcaaggggagaagacagaagatgaggacaggaagaacaag
ggttcctcctctgaccagacgggctcatcgcagtccttagctgcccatgaaagaccccaa
caggccagcaagtttgacaagttccctctaaaggtgatacgaaagaaggacccatatcca
gctaataataatcacggcaaaatgcaagagtttgacagcgggttaattcattggagtgct
ggcgggggagactcaacagagcacatccagactcactttgagccacgcaaagacttcttg
gaaccacgacaacgaatatgtgtgccctcaaagttgctgaagcaacgcgtcccagaagtg
cacctggaaaatagtttgctaactgatgaagaggaaaggaagaatcaggaggaagaagaa
aggtcaaaagagacttcttcctctgagaaagctgcggaggcagagaagaccagcccctct
ctggacaatgaggaggagaggaaaaacgattctgagacaaaaacagtggagaaagttgat
caccaggagaataatcgacccattccttcccttgacattctcttcaccccgagggcaaag
cagactggcatcatcctggaagatgagcctcacagtaaagacgaggggccgctcatcgca
ctggctaactggcaggactctttagcccgccgctgcatttgtatctccaacattgtccgg
agcctgtcctttgtgccaggcaacgaccacgagatgtccaaacatcctgggctgctgctg
ctgctgggccgcctgatcctgctccatcacaggcaccctgagcgcaaacaagcaccgctc
acctacgagaaagatgaggattcagaagagggcatgggccaaagggatgaatggtggtgg
gactgcttggagctcctgagggagaacacactggtcactttggcaaacatctcaggccaa
ctagacctctcaatctaccccgagagcatctgcctgcctctgttggatggtcttctccac
tgggctgtttgcccatcggcagaggcccaggaccccttcccctccctgggcccccacagt
gctttgtcacctcagagactggtgctggaaacacttagcaaactaagcatccaagacaac
aatgtggacctcatcctggccactccgccattcagtcggttggagaagctatacgggaac
ctggtgcggctaatcggagacaggaaggttgccgtctgcagggagatggccgtggtccta
ctggccaacctagcccagggtgataccgtcgcagctcgagcaatcgcggtgcagaaaggc
agcgtggggaacttgctgggcttcttggaggacagtctggccgccacgcagctccagcag
agccagagctctctgctacacctacagggaatgcacttcgagcccacaagtccagacatg
atgcggcgggctgcccgggcgctgcacgccttagccaaggtggaggataaccactcagag
ttcacactacaagagtcccgactcctcgacctttcagtgtctccccttatgaactcactg
gtttctcatgttatctgtgatgtactctttttggtgggccagtcatga
DBGET
integrated database retrieval system
