Trematomus bernacchii (emerald rockcod): 117480326
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Entry
117480326 CDS
T09643
Symbol
hif1aa
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha a
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04137
Mitophagy - animal
tben04140
Autophagy - animal
tben04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117480326 (hif1aa)
04137 Mitophagy - animal
117480326 (hif1aa)
04148 Efferocytosis
117480326 (hif1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117480326 (hif1aa)
Transcription factors [BR:
tben03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
117480326 (hif1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
117480326
NCBI-ProteinID:
XP_033983542
LinkDB
All DBs
Position
Unknown
AA seq
754 aa
AA seq
DB search
MDTGTVPEKKRVSSDRRKEKSRDAARSRRGKESEVFYELAQELPLPHSVSSSLDKASIMR
LIISYLRMRKLLSTEEPMAEEEKDLDAQLNGSYLKALEGFLMVLSEDGDMIYLTENVNKC
LGLAQFDLTGYSVFDFIHPCDQEELREMLVHKTGSKKTKEPNPARSFFLRMKCTLTSRGR
TVNVKSAAWKVLHCAGHVRVYDGCTEETPNGYKEPPVPYLVLICDPIQHPSNIEVPLDTK
TFLSRHTMDMKFTYCDERITELMGYDPDDLLNRSVYEYYHAMDSDHLTKTHHNLFAKGQV
STGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNFVLSGIQEEKLVLSLEQKEDV
KPEEEEEEEEEQQEEMKAVVEISELDMSPALKELEEKGPELDVIKLFTQAAEAQPFVSLY
DQLKEEPEALTLLAPAAGDAIISLDFSCPDSEIQLLKEVPLYNDVMLPSTSDKLALPLPP
YEPLHVSTISSEAAKAESFPSSTFTSLRSAEAGSLMDFCFPMDSEMKSDSKLDLVEKLFA
IDTDPKNLFTTQAMEDLDLEMLAPYIPMDDDFQLRSLTPEEPFSCGPVKSLQSSPIHITQ
DIHSYPFSPVSAPGSRTASPALLRAPQTAPIIAMRTPQLDKEVSLRTLAARNAQRKRKMG
DIKEMIGQGTLPQEQVEQGKKLKASESGTTRTILLLPSDMASRLLGCTSENTSSLFSLPH
LTRDDCEVNAPLQGRQCLLQGEELLCALDHVIVI
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atggacacaggaactgtaccagaaaagaaaagggtgagctcggaccggaggaaggagaag
tccagggatgcagcgcggagccggcgtgggaaggagtcggaagttttctacgagctggcc
caggagctgcccctgccccacagcgtcagctccagcctggacaaggcctccatcatgagg
ctcatcatcagctacctgcgcatgaggaaactgctgagcactgaagagccaatggcagag
gaggaaaaggatctcgatgcccagctcaacggctcctacctaaaggctttggagggcttt
ctcatggtgctgtcggaagacggagatatgatctatctcaccgagaatgtcaacaagtgc
ctggggctggcacagtttgacctaactggatacagtgtgtttgacttcattcatccctgt
gatcaagaagagctgagggagatgctggtgcacaaaacaggctctaaaaagaccaaggaa
ccaaacccagcacgcagcttcttcctccgaatgaaatgcactctcacaagcaggggccgc
actgtgaatgtcaaatcagctgcatggaaggtgctccactgcgccggtcatgtccgtgtg
tatgacggctgcactgaggagactcccaacgggtacaaggagcccccagtcccctacctg
gttctgatctgcgaccccatccaacacccctccaacatcgaggtccctctggacaccaag
acatttctcagccgccacacaatggacatgaagttcacctattgtgacgagaggatcact
gagctgatgggttatgacccggacgacctgttgaaccgctctgtgtatgagtactatcac
gctatggactcagaccatctgaccaagactcaccacaacttgtttgcaaagggccaggta
agcacaggccagtaccggatgttggctaaaagaggcggctttgtgtgggtggaaacacaa
gccactgtcatctacaacaacaagaactcccagccacagtgcgtcgtctgcgtcaacttt
gtgctcagtggcatccaggaggagaaactggtcttgtctctggagcagaaggaggatgtg
aagccagaggaggaggaggaggaggaggaggagcagcaggaggaaatgaaggctgtggtg
gagatcagcgagttggacatgtccccggccctgaaggagttggaggagaaaggcccagag
ctggatgtgatcaaactgttcactcaggcggcagaggcccagccgtttgtgagcctgtac
gaccagctgaaggaggagccggaggccctcaccctgctggccccggctgccggagacgcc
atcatctccctggacttcagctgccctgattcagagatccagctgctgaaggaggtccct
ctctacaacgatgtaatgcttccctccaccagtgacaagctggctctgcctctgccgcca
tacgagcccctccatgtcagcaccatcagctctgaggctgccaaagctgagagctttccg
tccagcaccttcaccagcctcagatcagcagaggctggcagtctcatggacttttgtttc
cccatggactcggagatgaaatcagattccaaactagacttggtggagaagctgtttgcc
attgatacagatcccaagaaccttttcaccacacaggcgatggaagacttagatctggag
atgttggctccctacatccccatggacgatgacttccagctgcgcagcctgaccccagag
gagcctttctcctgtggacctgtcaaatccctgcagagctctccaatccacatcacacag
gacatccacagctatcccttctccccggtcagtgcaccaggcagccgcacagcgtcccca
gcacttctcagggcccctcaaacggcccccattattgctatgaggaccccacagctggac
aaagaagtctcgctcaggaccctggcagcccggaatgcacagcgcaaaagaaaaatgggt
gacataaaagagatgattggacagggtactttgcctcaggaacaagtggagcagggcaaa
aagctgaaggcctcagagtcaggaacaaccaggaccatactcctgctgccttcagacatg
gcgagccgtctgctgggctgcacatcggagaacaccagttccctcttcagcctgccacat
ctgacccgcgacgactgtgaggtgaacgccccgctgcagggccgccagtgcctgctgcag
ggagaggagctgctgtgcgctctggaccatgtcattgtcatctaa
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