Trematomus bernacchii (emerald rockcod): 117480393
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Entry
117480393 CDS
T09643
Symbol
gsdmeb
Name
(RefSeq) gasdermin Eb
KO
K22146
gasdermin-E
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
117480393 (gsdmeb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tben02000
]
117480393 (gsdmeb)
Transporters [BR:
tben02000
]
Other transporters
Pores ion channels [TC:
1
]
117480393 (gsdmeb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Gasdermin
Gasdermin_C
Cnd1
Motif
Other DBs
NCBI-GeneID:
117480393
NCBI-ProteinID:
XP_033983591
LinkDB
All DBs
Position
Unknown
AA seq
459 aa
AA seq
DB search
MFASATRNFVEEVDPGGLLIPVSSLNDTIDLLTVVVKHKRFWFWQKTKYNPTDFNLNDIL
TGDTSIKPDVTESDFITYNGIYGDNVQGSIEISANSAQANANLNLEGKESSKLQSSFGSL
KKQEVDVKKLLCDSKTRVLDMSHSLIQQVKEKQRRVFGIVKERIVTTRLSSVIEEVQQGA
QCAGGLSICGPQSLKVSLKENGSLSKDSNINMEIPVHTTIAYALIELEIKQDGRYGLCLM
PDTDGGFEADGPGDSYSTHLRQELEELSEHFQVLSDLPATTRSTLLLQITKVMSDPVAVS
VLQNVLDKVCQDEKPALGDITATEAQKQNIQAILELLEQAGEESPQVLPALYLVTCSIDE
LTNDCLAFLGMCCSLSLLQSLELLIQCASGKGELPLNSAGLAALTEDNFEKTEHLFAASN
VSLKRDGDTVKTEIQHQPGQLPLVLCIAVRGLFSLARCD
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcctcagccaccagaaactttgtggaggaggtggatcctggaggtttgctgatc
ccagtgtccagcctgaacgacaccattgacctcctgacggtggttgtgaagcataagcgt
ttctggttctggcagaaaacaaagtataaccctactgattttaatttaaacgatatacta
acaggagacacatctataaagcctgatgtcactgagtcagacttcatcacatacaatggg
atatacggtgacaacgtgcagggttccatagaaatatcagcaaactcagcccaagccaac
gccaatttgaatctggagggtaaagagtcatccaaactccagtcctcctttggaagtttg
aagaagcaggaagtggatgtgaagaaactgctgtgtgactccaaaaccagggtcctggat
atgtcccattccctgatccagcaggtgaaggagaagcagaggcgggtgtttgggattgtg
aaggagcggattgtgaccactcggctctcttcggtcatagaggaggtgcagcagggagct
cagtgtgcaggaggactgagcatctgtgggccgcagagcttaaaggtgtcgttgaaagag
aatgggagcttgagtaaagacagtaacatcaacatggagattcccgtccatactaccatc
gcctatgctctcatagagctagaaatcaaacaggatggacgttatgggctgtgtctgatg
ccagacacggatgggggttttgaagccgatggccctggagactcttattctacccacctt
agacaagagctggaggaactgagtgaacatttccaggtgctttctgatcttcctgccacc
acaaggtcaactctgctccttcaaatcacaaaggttatgagtgacccagtggccgtcagt
gtactgcagaatgtgctggacaaggtgtgccaggatgagaaacctgctctgggtgatata
acagcgacagaggcccagaaacagaacatccaagccattctggagcttttggagcaggct
ggtgaagagtccccacaagtccttccagccctttaccttgtcacttgctccattgatgag
cttacaaatgattgtcttgctttcttgggaatgtgctgcagcctctcattgttacagtct
ctggagctactgattcagtgtgcatcggggaagggggagttgcctctaaacagcgcaggc
ctagctgcactgacagaagacaactttgaaaagactgaacatctgtttgccgcctccaat
gtgtccctgaagagagacggggacacagtgaagaccgaaatacaacaccagccaggacag
ctccctctggtcctgtgtatcgccgtcagaggtctcttctccttggcccgctgtgattaa
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