Trematomus bernacchii (emerald rockcod): 117480421
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Entry
117480421 CDS
T09643
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117480421 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117480421 (cnot3a)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117480421 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117480421 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
117480421
NCBI-ProteinID:
XP_033983631
LinkDB
All DBs
Position
Unknown
AA seq
904 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGLWLTCTIDTLNMQVDQFESEIESLSVQTRKKKGDKDDRIEELKRMVERHRFHIRM
LETILRMLDNDSIVVDSILKIKDDVDYYIDSSQDPDFEENEFIYDDLDLDDIPLVATSPS
GQGPLDDEMFLQSCSTPTSTTSSSPIPPSPATCTAESSEDDKKRGRSTDSEVSQSPVKNG
TPSLLSSFSSSTTSGSSSSSSLVSMASVIGGIPTVLPSCSLIGSFSSAVQQHQPALQQQP
LPPNQPQQQQQQQPPQTKPSVPSNNTPSPPSYPLLPASPAPSLPTPTTPISSTPISQSQF
ISMPTPASSLGLGLSLGLSNIGLTGTSSANQMSGLGLSGHHSPLNTMAGLISGSTPAPYA
QAASGGLGLSSITQSIISAESSTSIPPSGSSGVTTNGAGLGLGLLGSSPAHNSLSASILS
LVPGQNIAPGASQLPPSSVSTTPGAVGMMGGNGGNVGVVGGVVGGVNAAPARPPSGLKQN
GSTSYSAVVAENSTESALSTPSQSQSSQPSSLSSSNSQPMDNGSSLISSITLPPSSPSPS
FSDSTPGGGSLLNGPHSYTQVSEALKAPEPLSSLKAMAERAALGSGLDGEIPNLHLTERD
IFSSSSAAPGTPAAPQPSVSEVSIPPSLGVCPLGPTPLPKDQLYQQAMQESAWTHMPHPS
DSERIRQYLMRNPCPTLPFHHQIPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAK
ALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLED
RDLQ
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaacttcaaggtgagatcgacagatgtttgaaaaaagtagctgaa
ggtgtggaacagtttgaagacatctggcaaaagctccataatgcagccaatgcaaaccag
aaggaaaaatatgaggctgacctcaagaaagagataaaaaaactacagcgactgagagat
cagataaaaacatgggtggcctcaaacgagatcaaagacaaaaggcagctagtcgaaaac
cgcaaactaatagagacgcaaatggagcggttcaaggtggtggaacgtgaaacaaaaaca
aaagcctactctaaagaaggcttggggctcgctcagaaagtggatccagctcagagggaa
aaagaggaaacgggactgtggctaacgtgtacgatagacactctaaatatgcaggtggat
cagtttgaaagtgagatagaatctctttcagttcagacaagaaaaaagaagggcgacaaa
gatgatcgcattgaggagctcaaacgaatggttgaaaggcatcgattccacattcgcatg
ttggagaccattttacgaatgctggacaatgactctatagtggtggattcaatcctgaag
atcaaggatgatgttgattactacatcgactcgtctcaggacccggactttgaggagaat
gagttcatctacgacgacttagacctggatgacatcccattagtggcaacttctccgtcg
ggtcagggccctctggatgatgagatgttcctgcaatcctgcagcactcccacttccaca
acctcctcttcacccattcctccttccccggccacttgcactgctgagagctcagaggac
gataagaaaaggggacgctcgacagacagtgaagttagtcagtcgcctgtgaagaacggc
accccatccttgttatcttccttctcgtcctccacgacctcggggtcctcctcgtcctcc
tccctcgtgtccatggcgagtgttatcggaggcattcccacggttctacccagctgcagt
ctcatagggagcttcagcagtgcggtgcagcaacatcaacctgcactacagcagcagcct
ctgccaccaaaccaaccgcagcagcaacaacagcaacagccacctcagacaaaaccctct
gtcccctcaaacaacacccccagcccgcccagctaccccctcctcccagcctcacctgcc
ccctctctccccacgcccaccacacccatttcttcaactcccatctctcaatcacagttc
atatccatgcccaccccggcatccagtttgggactcgggctgagtctgggtttgagcaat
atcggcctgacggggaccagcagtgccaaccaaatgtctggtttgggtcttagcggccac
cactcccccttaaacacaatggcagggctcatttcaggctccaccccggccccctacgct
caggcagcatcaggaggtttgggtttgagcagcatcactcagtccatcatttcagcggag
agcagcacctccatccccccctctggctccagtggagtcaccaccaacggggcggggttg
gggctcggcttgcttggttccagcccggcccacaactctttgagtgcgagtattctgagt
ttggttcctgggcaaaatatagcccccggtgcctcgcagctgcccccgagttctgtcagc
acgacacccggagcagttggcatgatgggaggcaatggagggaatgtcggcgtggttgga
ggcgtggttggaggcgtgaatgctgctcctgcgcgaccaccaagtggcctgaagcaaaat
ggaagcacaagttacagtgctgtagtggcagagaactcgacagaatcagctctaagcaca
ccgagccagtcacaaagcagccagccctcatctctcagttcttcaaacagtcagccgatg
gacaacggctccagtttaatcagctccatcaccctgcctcccagctctccgtccccctcg
ttctctgacagcacacccggtggagggagtcttctcaacgggccccactcctacacacag
gtctcggaggccctcaaggcccccgagcctctcagctctctgaaggcgatggctgagaga
gcagcgctgggatccggtctggatggagagatccccaacctgcacctaacagagagagat
atcttctctagttcgtctgcggcgcccggcacacctgccgcccctcagccgtccgtgtcg
gaagtcagcattcccccctcgctaggggtctgtcccctcggccctacccccctccccaaa
gaccagctctaccagcaggccatgcaggagtcagcatggacgcacatgccccacccctcg
gactcggagaggatcaggcaatacctgatgaggaatccgtgtcccacactacccttccac
catcagataccaccgcaccactctgactccattgagttttaccagagactgtccacagaa
actctctttttcatcttctactacctggagggcaccaaggctcagtatctatctgccaag
gctctgaagaaacagtcatggaggtttcacacaaagtacatgatgtggttccagaggcac
gaggagcccaagactatcactgatgagtttgaacagggcacttacatttactttgactat
gagaaatggggccagaggaagaaggagggattcaccttcgagtacaggtacctggaagac
agagacctgcagtga
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