Trematomus bernacchii (emerald rockcod): 117480428
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Entry
117480428 CDS
T09643
Symbol
u2af2a
Name
(RefSeq) U2 small nuclear RNA auxiliary factor 2a isoform X1
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117480428 (u2af2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117480428 (u2af2a)
Spliceosome [BR:
tben03041
]
Complex A
U2 snRNP components
U2 related factors
117480428 (u2af2a)
Complex B
117480428 (u2af2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Transformer
Motif
Other DBs
NCBI-GeneID:
117480428
NCBI-ProteinID:
XP_033983640
LinkDB
All DBs
Position
Unknown
AA seq
490 aa
AA seq
DB search
MSDFDEFERQLSENKQGDVFSDSLTAERDKENRHHRRSSSRSRSRERKRRSRDRDRRSRD
RRGESKEERRHRRSSPASFPVDNAGSRSPHREVPAKKKNKVKKYWDVPPPGFEHITPMQY
KAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMD
FFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIR
RPHDYQPLPGMSENPSVYVPGTQPINGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTS
FGPLKAFNLVKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASVGSKN
ATLTSINQTPVTLQVPGMNSSVTQMGGLPTEVLCLMNMVAAEELLDDDEYEEIVEDVKDE
CSKYGQVKSIEIPRPVDGLEVPGTGKIFVEFMSVFDSQKAMQGLTGRKFANRVVVTKYCD
PDAYHRRDFW
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacttcgacgaatttgaaaggcagctgtctgaaaacaaacaaggtgatgtattc
tcagactctttgaccgctgaaagggacaaagagaaccgccaccaccgccggtcttcctct
cgtagccgaagcagagagaggaaaaggaggagcagagacagggatagacgcagcagggac
cgccgtggggaaagtaaggaggagcgcagacacagacgcagctcaccagccagcttcccc
gtggacaatgctggaagccgttctccacaccgtgaggtgccggcgaagaagaagaacaag
gttaaaaagtactgggatgtccctccaccgggttttgaacacatcactcccatgcagtac
aaagccatgcaagctgcaggccagatcccagccacagccctcctgcccaccatgactcca
gatggcctggctgtgacccccaccccggtgcctgtagtgggcagccagatgacccggcag
gcccgccggctctacgtgggtaacatcccctttggaatcacagaggagtccatgatggac
ttcttcaatgcccagatgcgtttgggtggtcttactcaggcccctggaaaccctgttctt
gcagtacagatcaaccaggataagaactttgccttccttgagttccgttcagtggacgaa
actacacaggcaatggcctttgatggcatcatctttcaaggccagagtctcaagatccgt
cgcccacatgattatcaacctcttcccggcatgagcgagaaccccagtgtctatgtgcct
ggtactcagccaattaatggtgtcgtttccacagttgttcctgactcagcccacaagctc
ttcattggaggtttgcccaactacttgaacgatgaccaggtgaaggagctcttgacgtcc
tttggtcccctgaaggctttcaacctggtgaaggacagtgctacaggcttatctaaagga
tatgcgttttgtgaatatgttgatgtcaaccttaatgaccaggctattgctgggctgaac
ggcatgcagctgggagacaagaagctcctggtacagagagccagcgtgggatccaagaac
gccactctcacgagtataaatcagaccccagtgacgctgcaggtgccgggtatgaacagc
tcagtgactcagatgggtggcctgcccaccgaggtgctgtgtctgatgaacatggtggcc
gccgaggagctgctggatgatgacgagtatgaggagatcgtggaggacgtcaaggacgag
tgcagcaagtacggccaggtcaagagcatcgagatcccccgacctgtggacggcctggag
gtgcccggcaccggcaagatctttgtggagttcatgtccgtttttgactcccagaaggcc
atgcaggggctgacgggaaggaagtttgccaacagggtggtggtgaccaaatactgcgat
ccagatgcttatcaccgccgagacttctggtag
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