Trematomus bernacchii (emerald rockcod): 117480586
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Entry
117480586 CDS
T09643
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase [EC:
2.8.4.5
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tben03016
]
117480586 (cdkal1)
Enzymes [BR:
tben01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
117480586 (cdkal1)
Transfer RNA biogenesis [BR:
tben03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
117480586 (cdkal1)
Prokaryotic type
Methylthiotransferases
117480586 (cdkal1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TraT
Motif
Other DBs
NCBI-GeneID:
117480586
NCBI-ProteinID:
XP_033983839
LinkDB
All DBs
Position
Unknown
AA seq
566 aa
AA seq
DB search
MPSACDSLIDDIEDMVSSSDPTPHERQSARKSIMPRFRKKKEPLSQEELHTDSLIPGTQK
IWMKTWGCSHNNSDGEYMAGQLAASGYKMTDDPTDADLWVLNSCTVKNPAEDHFRNSIKK
AQEQQKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAIKGHSVRLLGQKKDG
GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYSIEELVERARQS
FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPEGAMLRLGMTNPPYILEHLEEM
AKILNHPRVYGFLHVPVQSASDSVLMDMKREYCIDDFKKVVDFLKEKVPGVTIATDLICG
FPGETEEDFQETVELVKLYRFPSLFINQFYPRPGTPAAKMEQVPAHVKKQRTKELSQLFH
SYNPYDHEVGERQHVLVTEESFDAQYYVSHNKFYQQVLVPMRAEFKGKMIEVDIYEAGKH
FLKGLPVADSKPFTASIAAPLQKGEVSGLKQEPMANGFQGPSSSMSSPSHLLIGSYSVDR
EVLKKLIIGVTLAAAILSYVVEKLYT
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccgcctgtgactctctgattgacgacattgaggacatggtgtcctctagcgat
cccacacctcatgagagacagtctgctagaaagagcatcatgccgaggttcaggaagaaa
aaagagcctctgagccaagaggagctgcacactgatagtttaatccctggcacccaaaaa
atctggatgaaaacgtggggctgcagtcataacaactcggatggagagtacatggccgga
cagttagctgccagcggatacaagatgactgatgacccaactgacgcagacctgtgggtg
ctcaacagctgtaccgtgaaaaacccagcagaggaccacttcaggaactcaatcaaaaaa
gcccaggaacagcagaagaaggtggtagtagcaggttgtgttccccaggctcagccacgg
atggactacctaaaaggactcagcatcatcggggtccaacagattgatcgtgtggtggaa
gtagtggacgaggcaattaaaggtcactcagttcgtctgctgggtcagaagaaagatgga
ggccggaggcttggtggcgcaagactggaccttcccaagatcaggaagaaccctctcatc
gagatcatctccattaacacagggtgtttgaatgcgtgtacctactgtaagactaaacat
gccagaggagacctggccagctattccatcgaggagctagtggagagagccagacagtct
ttccaggagggagtgtgtgagatctggttgaccagtgaagacacaggtgcctacgggaga
gacataggcacagacctgcccacactgctgtggagactggtggaggagatccctgaagga
gccatgctgaggctgggtatgaccaacccaccgtatatcctggaacacctagaggagatg
gctaagatattaaatcatccgcgggtctatggcttccttcatgttcctgtgcagtcggcc
tcagacagcgtcctgatggacatgaagagagagtattgcatcgatgacttcaagaaagtg
gtggacttcctcaaagagaaggtcccgggtgttaccattgctacagatttaatctgcggt
tttcctggtgagacagaagaagacttccaagagactgtagagttggtgaagctctaccga
ttccccagtctgttcatcaaccagttttaccccaggcccggtacacctgccgccaagatg
gagcaagttccagcacatgtgaaaaagcagaggactaaagagctgtctcaactcttccac
tcttacaacccctacgaccacgaggtaggggagaggcaacatgtgctggtgacagaggag
tcatttgacgcccaatactatgtgtctcacaacaagttctaccaacaggtgctggtgcct
atgagggctgagttcaaagggaagatgatcgaggtggacatttacgaggcaggaaaacac
ttcctgaaaggcctaccagtagcagacagtaagcccttcactgcctccattgctgccccg
cttcagaaaggagaggtgtctggcctgaagcaggaaccgatggccaatggcttccaaggt
ccctcttcctcaatgtcgtctccatctcatttgttgatcggctcctacagtgtggacagg
gaagtattgaaaaagctgataatcggggtcactctggcagcagccatcttgtcctacgtc
gtagagaaactgtacacatag
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