Trematomus bernacchii (emerald rockcod): 117480642
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Entry
117480642 CDS
T09643
Symbol
col14a1a
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XIV) chain
KO
K08133
collagen type XIV alpha
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tben00535
]
117480642 (col14a1a)
Proteoglycans [BR:
tben00535
]
Extracellular matrix (ECM) proteoglycans
Others
117480642 (col14a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Fn3_PBP1
Fn3_VIN3
Pur_ac_phosph_N
VWA_3
NDNF
Motif
Other DBs
NCBI-GeneID:
117480642
NCBI-ProteinID:
XP_033983921
LinkDB
All DBs
Position
Unknown
AA seq
1757 aa
AA seq
DB search
MLSMGKYRWCLLAPLVLLVLVSHFPSKAQSQVPVPKRLRFKVLSSSKLLVAWKEPKGDFD
SYLFLYKSTPGGEQKEIIISKSDTKVLITDYSSSQDYTVSVISVRGSEQSRPLQGRFKVE
RGESDREDLPQPERLTESVVPPEDANEISGVDQFVCHTEAVADIIILVDGSWSIGRLNFR
LVRMFLENLVNAFDVGIDKTRIGLAQYSGDPRIEWHLNAFYTKDAVLDAVKNLPYKGGNT
LTGLALTYILENSFKPESGSRVGVPKIGILITDGKSQDDVIPPAESLRNAGVELFAIGVK
NADENELHSIASEPGESHVYNVADFNVMSSIVGALTKTVCEQVEQQDKDIKQKQIPETTG
APLELVTSEVTARTFRVSWSHAPGNVEKYRVVYYPASGGEPQEAVVDGSETSVVLQHLSS
VTEYQLAVFAVYANEASEALRGSETTLALPSVTVLQLFDVTHSSMKARWDSVDGVSGYVL
LYAPLRDDGDFTDKEEKLSDAVTELELHGLNPSTEYTVTLYAMFGDEASDPITIQRTTLP
LSPPSNLQFSDITHNSAHIRWDAVPRGVKGYRILWVKTDGGVKKEVDVGPVNSYDLSELT
SLSEYSVAISALYAEGQSEPLTDGFTTTPVPGPLDLRSNDVSADSFQVSWDHSADDIFLY
RLSWAPFMGGDTKEVVLSGSDNRYILTGLSPSTEYEVMLTAVFKDESESDTISVIETTLA
RHAARNLLLSDETTQSLEASWELEDPLVKSYRVSYADLRGDHEEEFVVVPGGQRRAVLQP
LLADTQYKVTVTPVYTDGQYGISVSATGATLPLLSPGNLRVSEEWYNRFRVTWDPPQSPT
TGYRIVYQPIYVPGPVLETVVGEDVNSKMLLNLLSGTEYSVQVTASYPTGQSEPLLVNSK
TLLLGVSGLSTYQIRPISLCVQWQPLLQATLYRVSIQSTLNGQRQEVSLGAGASRQCFYD
LTPGSQYQISVHTQMQEMEGPAVSITDMTLPAPTLAPTEPPTTEPPPTIPPAKEVCKEAK
ADLAFLVDGSWSIGDDNFMKITRFLYSTMGSLDLIGPDGTQVAIAQFSDDARTEFQLSSH
GNKEALLEAIQSIRYKGGNTKTGRAIKHVKDSIFTPEGGARRGVPKVLVVLTDGRSQDDV
NKVSKEMQMDGYIIFAIGFADADYGELVNIASKPSDRHVFFVDDLDAVKKIEEQLITFVC
EAATATCPSVLMSGNTMAGFRMMEKFGLVEKEYSTIPGVSLEPGSFNTFPCYRLHRDAMV
SQPTKYLHPEGLPSDYTISLMLRLLPETPQEPFALWEILNKEKEPLVGLILDNSEKTLTF
FNYDYKGDFQTVAFEGTEIQKIFHGSFHKLHVTISKTSVKVVLDCSAVEEKPVSAAGNIT
TDGVEILGRLVRSRGSRDNSAPFQLQMFDIICSTSWASRDKCCELPALRVEEQCPSLPHA
CTCSQDSKGPPGPSGPPGGPGIRGVRGDRGESGMTGPQGPLGELGPPGPSGPPGPQGPSG
LSIQGPPGAAGGKGENGAVGPAGIMGVPGGPGSSGRDGPPGPRGLPGNGGPQGRQGAPGP
GGSPGGPGAPGPGGSSGLQGDQGVPGSAGTKGDKGERADVQSQAAVRAIARQVCEQLIQS
HLSRYNTILNQIPVQSSTSIRTVPGPPGEPGRRGLPGPQGEQGPSGRPGFPGGSGQNGRA
GERGLAGEKGERGNAGVGSQGPRGQTGLPGLPGXGRTGSQGPSGRPCNPGTSGRQGNPGS
TGPDGPPGYCDQNSCIG
NT seq
5274 nt
NT seq
+upstream
nt +downstream
nt
atgttgtccatgggaaagtataggtggtgtttgttggctccactggtgttactggtccta
gtgtcccatttcccctcaaaggcacagagtcaagttccagttccgaaaagactgcgtttc
aaagtgctgagctcaagtaaacttcttgtggcatggaaggagccaaaaggagactttgac
agctatctattcctctacaagagcacaccaggtggtgagcagaaggagatcataatatct
aaatcggacaccaaggtgctgataacagactacagctcctctcaggactacactgtcagt
gtgatcagtgtcagaggcagtgagcagagcagaccgcttcagggcagatttaaagtggag
agaggtgagagtgatagagaggaccttcctcagcctgagaggctgactgagtctgtcgtg
cctcctgaggatgccaacgagatctctggagttgatcagtttgtgtgccacactgaggcc
gttgcagacatcataatcctggtggacggctcttggagtatcggtcggcttaacttccgg
ctggtccgcatgttcttggagaatctggtcaatgcctttgatgttggcatcgataaaaca
aggataggtctggctcagtacagtggggatcccaggatagagtggcatcttaatgctttc
tacacaaaagatgccgttcttgatgccgttaagaacctgccgtacaagggaggaaacact
ctcacaggccttgcgttgacctatattttggagaacagcttcaagcccgagtctggctcc
cgtgtgggtgtacctaaaatcgggatcctcattacagacgggaagtcccaggatgatgtc
atacctccggcagaaagcctgcgaaatgctggggttgagctgtttgccattggtgttaag
aatgctgatgagaatgagctgcactccatcgcctcagagccaggcgaatctcacgtctac
aacgtggctgatttcaacgtcatgagctccatcgtaggggctctgaccaagactgtgtgt
gaacaagtggagcagcaagacaaggacattaaacagaaacagataccagagacgacagga
gccccacttgagctggtgacatcagaagtcacggcccggacttttagggtctcatggagc
cacgcccccggaaacgtagagaaatacagagtggtttattaccctgctagcggaggagaa
ccacaggaggcggtagtggacggcagtgagacttcagtggtgttgcagcatctcagctct
gtcactgagtaccagctggctgtgtttgctgtgtatgcaaacgaggcaagtgaagctctc
agaggatcagaaacaaccctagcccttccctcagtgacggtcctccagctgttcgatgtg
actcacagcagcatgaaagcaagatgggacagtgtggatggagtctctggctatgtgctg
ctgtacgcaccgctcagagatgatggagactttacagacaaggaggaaaagttatcggat
gcagtgacagagctggagctgcatgggttgaaccccagcactgaatacaccgtcactctt
tacgccatgtttggggacgaggccagtgaccctattacaatccaaagaactacattaccc
ctgagtcctcctagcaacctgcagttttctgacatcactcacaactccgcccacatccgc
tgggatgccgtgccgagaggggtcaaaggttaccgcatcctgtgggtcaagacggacgga
ggagtcaagaaggaggtggacgtgggtcctgtgaactcctacgacctcagtgagctgacg
tctctgagtgagtactcagtggccatctctgccctgtacgctgagggccaatcagagccg
ctcacagatggattcactaccaccccggttcctggtcctttggatcttcgctccaatgat
gtgagcgcagacagcttccaggtcagctgggatcactcagccgatgacatcttcctctac
agactctcctgggccccgttcatgggtggcgacacaaaggaggtggtcttgagtggaagt
gataacagatacatcctgactggcctgagcccctccactgagtatgaagttatgttgacg
gctgtgttcaaagatgaatctgagagtgacaccatctctgtcatagagaccacattggca
cgccatgctgcgaggaacctgctgctgagtgacgagaccacccagagcttagaggcatca
tgggagctggaagacccccttgtgaaaagctacagagtctcctatgctgacctcaggggc
gaccacgaagaagagtttgttgtagttcctggtggtcagaggagagcagtgcttcagcct
cttctagcagacacccagtacaaagtgacggtcacacctgtgtacaccgatggacaatat
ggcatcagtgtatctgccacgggggccacattgcccctcctgtctcctggaaacctgcgt
gtgtcagaggagtggtacaaccgcttcagagtcacctgggatccccctcagtctcctaca
acagggtacaggatcgtctaccagcctatatatgttccaggaccagttttggagacagtt
gtgggggaagatgtgaactccaagatgcttctgaatctacttagtgggacggagtacagc
gttcaagtgacggcttcctaccctacgggacaaagtgaacctctgctagtgaactccaag
acattgctcctgggtgtctctggcttgtcgacctaccagatacgtcccatcagcctgtgt
gtccagtggcagcctcttctacaggccacgttatacagagtctccattcagtctacactc
aatggtcagaggcaggaagtgagcctgggagctggtgcttcccgacagtgcttctacgac
ctcacccccggcagccagtaccagatcagcgttcacacccagatgcaggaaatggaggga
cctgctgtctccatcactgacatgacgttgccagcgcccactctagctccgactgaaccc
ccgaccactgagccccctcccaccatcccacccgctaaagaagtgtgtaaggaggccaag
gcagacctggccttcctggtggacgggtcctggtccatcggagacgacaacttcatgaag
atcacacgcttcctctacagcaccatgggatcgctggatctgattggaccagacggcacc
caggtcgccatcgctcagttcagcgacgacgcacggacagaattccagctgagttcccat
ggcaacaaggaagcgctgttggaagctattcaaagcatcagatacaagggaggaaacacc
aagacaggtcgggccatcaaacatgtcaaggattcaattttcaccccggagggcggagct
agaagaggcgttcctaaagtcctggttgttctcactgacggacgttcacaagacgatgtc
aacaaagtgtccaaagagatgcagatggatggctatatcatctttgccattggctttgcg
gacgcggactacggagagctagtgaatattgccagcaagcccagcgatagacacgtcttc
tttgtggacgatttggatgccgtgaagaaaatagaagagcagctcattacttttgtctgt
gaggctgctaccgccacctgtccgtctgtgttgatgagtggtaacacaatggcaggtttc
cgtatgatggagaagttcggcctggtagagaaggagtacagcaccatacctggagtctct
ctggagccgggctcgttcaacaccttcccttgttacagactacaccgagacgcaatggtg
tcgcagcccaccaagtaccttcacccagaaggtttaccctctgattacactatttctctg
atgctccgcctacttcctgagaccccgcaggagccctttgcattgtgggaaatcctcaat
aaggagaaggagccattagtgggattaatcctggacaactctgaaaagacgctgacgttc
ttcaactatgactacaaaggagacttccagactgtcgcctttgaaggaactgaaatccaa
aaaatcttccatggcagtttccacaagctccatgtaaccatcagcaagacgtctgtgaag
gtggtgttggactgttcagcggtcgaggagaaaccagtcagtgcggctggaaacatcacc
acggatggagtggagatacttggaaggctggttcggtccagaggcagccgggacaactct
gctccattccagctccagatgtttgacatcatctgcagcacatcctgggccagcagagat
aagtgttgtgagctgccagctttgagagttgaggagcagtgcccttccttgcctcatgcc
tgtacctgctcccaggacagcaaaggacctccaggaccttcaggaccccctggcggtcca
ggcataaggggagtcagaggagaccgaggagagtcaggaatgacgggacctcaagggcca
ctgggagagcttggccctcctggaccttcaggaccacccggccctcagggacccagcggt
ctctctatccaggggcccccgggtgctgctgggggaaagggagagaatggagcggtcggt
ccagccggaataatgggtgttcctggaggcccaggctcatctggcagagacggcccccca
ggaccaaggggtctgccgggtaatggtggaccgcagggacgacaaggagctcctggacct
ggcgggtcccctggaggaccaggagccccgggacctggtgggtcatcagggctccaggga
gatcaaggagttcctggttctgctggtaccaaaggcgataagggagaaagagctgatgtg
caatcccaagctgctgtgcgggccatcgcacggcaagtgtgtgagcagctcatccagagc
cacttgtctcgctataacaccatactgaaccagatcccggtccagtcttccacgtcaatc
cgaacagtacccggccccccaggggagccggggcggagaggcctcccggggccccagggg
gagcaggggccatctggcaggccaggcttcccgggtggaagcggccagaacggacgggca
ggagagagaggtctggcgggagagaagggagagagggggaatgcaggggttgggagtcag
ggtcctcggggacaaaccggacttccaggcctgccaggtngaggacggacaggcagccag
ggcccctctggtcggccctgcaacccagggacatcggggaggcaggggaatcctggttca
acgggaccagacggccccccggggtactgcgaccagaactcctgcatcgggtaa
DBGET
integrated database retrieval system
