Trematomus bernacchii (emerald rockcod): 117480797
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Entry
117480797 CDS
T09643
Name
(RefSeq) slit homolog 1 protein-like
KO
K06261
platelet glycoprotein Ib alpha chain
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117480797
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
tben04090
]
117480797
CD molecules [BR:
tben04090
]
Proteins
117480797
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_9
LRR_5
LRR_LRWD1
LRR_EndoS
Motif
Other DBs
NCBI-GeneID:
117480797
NCBI-ProteinID:
XP_033984153
LinkDB
All DBs
Position
Unknown
AA seq
610 aa
AA seq
DB search
MHIFLLFVLLVAPVTAVPGCHGGRDKAHRRQENCTAAGFTEVPTGLEPATKVLMFPQNLF
SSLSWSSFQIFTEIYEIDLTGNKVPELTPSSAPILPSLRVLRLGSNRLTSLPDGSFSACP
ALTELYLEGNALVSLSDNTFSGLSKLEILDLSSNRIQVLPQLMLQPLAVIETLYIQNNKV
LTMPDGWFSPKEDVPYLFLSANPWACSCSLGYLRRYIDEYDYNVYVRNGPILKTDPWSVV
CDSPLRHKATAVLNLEESELCPPEPEHPIRGDGNKPMETVAPTVPVLTNTHIHTTTTAVS
MTTAFALLVAPVKAVPGCHGGRDKDHRRQENCTVAGFTGVPTGLEPATKVLLFPQNLFSR
LSWSSFQIFTEIYEIDLTGNKVPELTPSSAPILPSLSVLRLGSNRLTSLPDGSFSACPAL
TELYLEGNALVSLSDNTFSGLSKLEILDLSSNRIQVLPQLMLQPLAVIETLYIENNKVLT
MPDGWFSPKEDVPYLFLSANPWACSCSLGYLRRYLDEYEFNVYVRNGPIVTTDASSVVCD
SPLRHKATAVLNLEESELCPPEPEHPIRGDGNKPMETVFKATTTTPKATTTTPKATTTTT
KGNNHHPRGA
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgcacatcttcctcctcttcgtcctcctcgttgctccggtaacagcggttcccggttgt
cacggcggcagagataaggcccaccggagacaggaaaactgcaccgcggcgggattcacc
gaagtaccgacgggactcgaacccgcgaccaaggttttgatgtttccccagaacctattc
tccagcctctcctggtcctccttccagatcttcacggagatctacgagatcgacctcact
ggaaacaaggttccagagttgacccccagctccgctccgatcctccccagcctcagagtc
ctccggctggggtcgaaccgcctgacctccctccctgatggatccttctccgcctgtccg
gcgctgactgaactctacctggagggcaacgccctggtttctctgagtgacaacaccttc
tccggactcagcaagctggagatcctggacttatcgtccaatcgtatccaggttcttcct
cagctcatgctacaacccctcgctgtgatcgagaccctgtacatccagaacaacaaggtc
ctgacgatgcctgacggttggttcagtccaaaggaggacgtgccgtaccttttcctctcg
gccaatccctgggcctgctcctgttccctcggttacctgcgcagatacattgatgaatat
gattacaatgtgtacgtacggaatggaccgatcctcaagaccgacccttggagcgtggtg
tgcgactctcctctgaggcataaggcaacagctgtattgaatcttgaagaatctgagcta
tgtccaccagagccagagcatccgatacgtggagacggaaacaagccaatggaaactgtg
gctcccaccgtcccagttcttactaatactcacattcataccactactactgctgtttct
atgactactgcttttgccctcctcgttgctccggtaaaagcggttcccggttgtcacggc
ggcagagataaggaccaccggagacaggaaaactgcaccgtggcgggattcaccggagta
ccgacgggactcgaacccgcgaccaaggttctgttgtttccccagaacctattctccaga
ctctcctggtcctccttccagatcttcacggagatctacgagatcgacctcactggaaac
aaggttccagagttgacccccagctccgctccgatcctccccagcctcagtgtcctccgg
ctggggtcgaaccgcctgacctccctccctgatggatccttctccgcctgtccggcgctg
actgaactctacctggagggcaacgccctggtttctctgagtgacaacaccttctccgga
ctcagcaagctggagatcctggacttatcgtccaatcgtatccaggttcttcctcagctc
atgctacaacccctcgctgtgattgagaccctgtacatcgagaacaacaaggtcctgacg
atgcctgacggttggttcagcccgaaggaggacgtgccgtaccttttcctctcggccaat
ccctgggcctgctcctgttccctcggttacttgcgcagataccttgatgaatatgaattc
aacgtgtacgtgcggaatggaccgatcgtcacgaccgacgcttcgagcgtggtgtgcgac
tctcctctgaggcataaggcaacagctgtattgaatcttgaagaatctgagctgtgtcca
ccagagccagagcatccgatacgtggagacggaaacaagccaatggaaactgttttcaag
gcaacaaccaccacccccaaggcaacaactaccacccccaaggcaacaaccaccactacc
aagggcaacaaccaccacccccgaggagcctag
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