Trematomus bernacchii (emerald rockcod): 117480932
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Entry
117480932 CDS
T09643
Symbol
si:dkey-156n14.5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX17
KO
K13178
ATP-dependent RNA helicase DDX17 [EC:
5.6.2.7
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117480932 (si:dkey-156n14.5)
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117480932 (si:dkey-156n14.5)
Spliceosome [BR:
tben03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117480932 (si:dkey-156n14.5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
117480932
NCBI-ProteinID:
XP_033984247
LinkDB
All DBs
Position
Unknown
AA seq
646 aa
AA seq
DB search
MRGGSSYGDRDHGRDRPRFGATSGRGGPPPMKFGNPGERLRKKKWNMDDLPKFEKNFYTE
HPEVQHLSQFEMEEFRRNKEITVRGSGCPKAIPAFHQAQFPQYVMDVLMQQHFKEPTAIQ
AQGFPVALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQ
QVQQVALEYGKSSRIKSTCVYGGAPKGPQIRDLERGVEIIIATPGRLIDFLESGKTNLTR
CTYLVLDEADRMLDMGFEPQIRKIVEQIRPNRQTLMWSATWPKDVRQLAEDFLREYVQIN
IGALELSANHNILQIVDVCMETEKDQKLLQLMEEIMAEKENKTIIFVETKKRCDELTRRM
RRDGWPAMCIHGDKSQPERDWVLAEFRSGKAPVLLATDVASRGLDVEDIKFVINYDYPNS
SEDYVHRIGRTARSTNTGTAYTFFTPGNCRQARDLVRVLTEARQAVNPKLLQLVDSGRGG
NGGRMRYRGSSSYNSNSMYQGGYDRRTYGGGGGGASKDGANGFSSGGRTNHDANHSSSSS
SSSYRDRSQGHRSSYNSGGSDQFQSYSGSGGYSSRSGGPPPGGQSSQPQGQFAQPPSAPP
SAGGPIPLMARPFAPLQPPLKGIMGQPPYPFAAPPAPPSGPPPPRK
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgagagggggttcctcctacggagacagagaccatggacgagacaggccacggtttggg
gccacgagcggtcgcggtggacctccaccaatgaaatttggaaatccaggtgagcgtctc
cgcaagaagaagtggaacatggatgatctgccaaaatttgagaaaaacttctatactgaa
caccctgaggtccaacacctcagtcagtttgaaatggaagagtttcgcaggaacaaggag
attaccgtcagaggctctggatgcccaaaggcgatacccgcttttcaccaggcgcagttt
cctcagtatgtgatggatgtgctgatgcagcagcacttcaaagagcccacagcgatccag
gctcagggcttccctgtggccctcagtggcagggacatggtgggcatcgctcagactggc
tccggaaagactctggcttatcttcttcctgctattgtccacatcaaccaccagccttac
ctggagagaggagatggcccaatttgtcttgtccttgctccaaccagagagctggctcag
caggttcagcaggtcgcacttgaatacggcaagtcgtcccgtatcaaaagcacctgtgtc
tatggtggagcacccaaaggaccacagattcgagacctcgagaggggtgttgagatcatt
atcgccacaccaggtcgcctcattgacttcttggagagcgggaaaactaacctgacgcgc
tgcacctacctcgtgctggatgaagccgaccgcatgctggacatgggcttcgagccacag
attcgcaagatagttgaacaaatcaggcctaacagacagactctgatgtggagtgcaacc
tggccgaaggacgtccggcagcttgccgaggacttcctgagggaatatgtccaaataaat
attggcgcactggagctcagtgccaaccacaacatcctgcagattgtcgatgtctgcatg
gagactgaaaaggaccagaaacttcttcagctgatggaggagataatggctgaaaaagaa
aacaaaaccatcatctttgtggagactaagaagcgctgtgatgaactcaccagaaggatg
aggcgggatgggtggccagcaatgtgtatccatggagacaagagccagccagaaagagac
tgggtacttgcagaatttcgcagtggtaaagctcctgtactgcttgctaccgacgtggcg
tctcgtggtctggatgtggaagatatcaagttcgtcatcaactatgactaccccaactcc
tcggaggattacgtccaccgtattggacgtacggcccgcagcaccaacacgggtacagct
tacaccttcttcaccccggggaactgtcgacaggcccgggacctggtccgggttctgact
gaggcccggcaggccgtcaaccccaaactgctccagctggtggattcagggcgtggtgga
aacggcggcagaatgcgttaccgtggcagcagctcctacaactccaacagcatgtaccag
gggggttatgatcgcaggacgtatggcggtggtggaggtggcgccagcaaagatggcgcc
aatggcttcagcagtggcggtcgcaccaaccatgatgcaaaccactcctcttcctcctcc
tcttcctcctacagggacagaagccaggggcacaggagtagctacaactctggtggctcc
gatcagttccagagctacagcggcagcgggggctacagctcccgcagcggaggcccgccc
cctggaggtcagagcagccagccgcagggtcagtttgcccagcctccttctgctcctcca
tcagcgggggggccaattcctctgatggctcggcccttcgctcctctacagccaccgctc
aagggcatcatggggcagcctccttacccttttgctgctccacccgctcctccttcaggc
cctccacctccccgaaagtag
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