Trematomus bernacchii (emerald rockcod): 117481104
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Entry
117481104 CDS
T09643
Symbol
usp9
Name
(RefSeq) LOW QUALITY PROTEIN: ubiquitin specific peptidase 9
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tben01002
]
117481104 (usp9)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tben04121
]
117481104 (usp9)
Enzymes [BR:
tben01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
117481104 (usp9)
Peptidases and inhibitors [BR:
tben01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
117481104 (usp9)
Ubiquitin system [BR:
tben04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
117481104 (usp9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
FAST_1
Vps23_core
Motif
Other DBs
NCBI-GeneID:
117481104
NCBI-ProteinID:
XP_033984522
LinkDB
All DBs
Position
Unknown
AA seq
2584 aa
AA seq
DB search
MTATTRGSPVGGNDSQGQGQGQAPDAQSQPPLPQNQTSSPNSSNENSPVSPPEEQGQGDG
PPQLEEEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIDLSKKGMDVKCEAC
QRFFRDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPLLELLAM
ATNPHCKFHIYNGTRPSETVPAGAQLADDELFARPPDPRSPKGWLVDLINKFGTLNGFQM
LHDRFMSGQALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPVIEMVPQFLENLTDEELKK
EAKNEAKNDALSMIIKSLKNLASRVPGQEETVKNLEIFRLKMILRLLQISSFNGKMNALN
EVNKVISSVSYYTHRHNPEEEEWLTAERMAEWIQQNHILSIVLRDSLHQPQYVEKLEKIL
RFVIKEKALTMQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKASWT
NASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQALSAHIKILD
YSCSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNLSQTQRSPHVF
YRHDLINQLQHNHALVTLVAENLSAYMETMRQFSKEEQAEFDPQTVRPGSRYSHVQEVQE
RLNFLRFLLKDGQLWLCAPQAKQIWKCLAENAVFLCDREACFKWYSKLMGDEPDLDPDIN
KDFFENNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRAYMMDDLELIGLDYLWR
VVIQGSDDIASRAIDLLKEIYTNLGPKLQVNQVEIHEDFIQSCFDRLKASYDTLCVLDGD
KDSINCARQEAIRMVRVLTVLKEYINECDSDYHEERTILPMSRAFRGKHITLIVRFPNQG
RQVDDLDIWSHTNDTIGSVRRGILNRIKANAAHTKIELFIGGEVVDPADDRKLIGQLNLK
DKTLITAKLTQVSANMPSSPDSSSDSSTGSPGNHGNHFSDGPNPEVESCLPGVIMSLHLR
YISFLWQVADLGCNLNMPLLRDGARVLMKLMPPDNNTVENLRAVCLDHAKLGENSLSPSL
DSRFFGPSPSQVLYLIEVVYALLMPASATLGEDASDFQYNFLKSGGLPLVLSMLTRNNFL
PSADMETRRGAYLNALKIAKLLLTAVGFGHVKAVAEACQPNAEGNIPVSPINQATHDQAL
VLQSALQNIPNPASECMLRNVAIRLAQQISDEVTENNFFQASKYIPDICVIRAVQKIVWA
SGCGTVQLVFSSNEEISKIYEKTNAAKEPDGEDEQVCCEALEVMTLCFALMPTALDTLSK
EKAWQTFIIDLLLHCHSKSVRQMAQEQFFLMATRCCMGHRPLLFFITLLFTVLGSTAKER
AKHAGDYFTLLRHLLNYAYNSNINLPNAEVLLNNEIDWLKRIRDEVKRTGETGVEETILE
GHLGVTKELLAFQTPEKKYYIGCEKGGANLIKELIDDFIFPASNVYLQYMKSGEFPTEQA
IPVCSSPASINAGFELLVALAVGCVRNLKQIVDTLTDMYYLGCETLTEWEYLPPXGPRPN
KGFVGLKNAGATCYMNSVIQQLYMIPPIRNGILAIEGTGTDVDDEMSGDEKQENESNVDP
RDEVFSYHHQFDDKPASKSEDRKEYNIGVLRHLQVIFGHLAASRLQYYVPRGFWKQFRLW
GEPVNLREQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQKICQGCPHRYECE
ESFTTLNVDIRNHQNLLDSMEQYVKGDLLEGANAYHCEKCNKKVDTVKRLLIKKLPPVLA
IQLKRFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDDVNPENQVIQQNEPSE
PTPPGSSKYRLVGVLVHSGQASGGHYYSYIIQRNGGDGEKNRWYKFDDGDVTECKMDDEE
EMKNQCFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYERMDSLDKDSELVKYISELTI
SSTKPNQVKMPGVIECSVRKQNVQFMHNRMQYSLEYFQFIKKLLTCNSVYLNPPPGQDHL
LPEAEEIAMISAQLAARFLFSTGFHTKKVVRGPASDWYDALCILLRHSKNVRYWFAHKVL
FAFPNRFSEYLLECPSAEVRGAFAKLIVFIAHFSLQDGPCPSPTASPGPATQGCDNLSLS
DHLLRAVLNLLRREVSEHGRHLQQYFNLFVMYANLGLAEKTQLLKLNVPATFMLVALDEG
PGPPIKYQYAELGKLYTVVSQLVRCCDVAARMQSSINGNPPLPNPYGDTNLTTPVMPVQQ
LVAEILFVRTSYVKKIIEDCSNSEETVKLLRFSCWENPQFSSTVLSELLWQVAYSYTYEL
RPYLDLLLQILLIEDSWQTHRIHNVLKGIPDDRDGLFDTIQRSKNHYQKRAYQCIKCMVA
LFSNCSVAYQILQSNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPPVQSNETSN
GYFLERSHSARMTLAKACELCPEELKCTQGSPGKEPDEQEAPDDQDSSPPEDTSLYPHSP
GTTQFQQNNHPHGQPYTGPAAQHMNNPQRPGPASAPTPGPAQTPPTPGPRAHSRPRPAST
RKLG
NT seq
7755 nt
NT seq
+upstream
nt +downstream
nt
atgacggccaccacgcgtggctctccggtggggggcaatgacagtcagggccagggccag
ggccaggcacctgatgctcagagccaacccccactgccacagaaccagacatcatctcct
aactcatctaatgagaactctccagtgagcccaccagaggagcaaggccagggggacgga
ccccctcagctggaagaggaggagcccgccttccctcacactgacctagccaagctggat
gatatgatcaacaggcctcgttgggtcgttccagttttgccaaaaggagagttagaagtc
ctcttggaagctgctattgacctgagtaaaaaaggaatggatgtaaagtgtgaggcgtgt
cagaggtttttccgagatggtctgaccatctccttcacaaagatcctgactgatgaggcc
gtcagtggctggaagtttgagatacataggtgtatcatcaataacacacaccgtttggtg
gagctgtgtgtagccaagctctctcaggactggttccctctactggagctgctggccatg
gccaccaaccctcactgcaagttccacatctacaacggcacgcggccctctgagaccgtc
cccgccggagcacagctggccgacgacgagctcttcgcccgaccacctgaccctcgctct
cccaagggctggttggtggacttaataaacaaatttggcacgttaaacgggtttcaaatg
ttgcacgatcgcttcatgagcggccaagcactgaacgtccagatcatcgctgcacttatc
aagccttttggccagtgttacgagttcctcacattgcacacggtaaagaagtacttcctt
ccagtcatcgagatggttccccagtttctagagaatctcacagatgaggagctgaagaaa
gaggcgaagaatgaagccaaaaacgacgcactgtccatgataatcaagtctctgaagaat
ctggcttctcgtgtaccggggcaggaggagaccgtgaagaatttagagatttttagatta
aaaatgattcttaggttattgcaaatttcttcttttaacggcaaaatgaatgcactaaat
gaagtcaacaaggtgatctccagtgtgtcctactacactcatcgacataaccctgaggag
gaagagtggctgactgcagagcgcatggcggagtggatccagcagaaccacatcctgtcc
atcgtgctgagggacagtttgcaccagccgcagtacgtggagaaactggagaagatcctt
cgcttcgttatcaaagaaaaagctcttacaatgcaggatctggacaacatctgggcggca
caggctggtaagcatgaggccattgtgaagaacgtccatgacctcctggccaagctggca
tgggacttctcacccgagcagctcgatcacctttttgactgcttcaaggcaagctggacc
aatgccagcaagaagcagcgcgaaaagttgctggaactaatccggcgcttggccgaggat
gataaggatggggtgatggcccacaaggtcctcaacctgctgtggaacctggcccacagc
gatgatgtgcctgtagacatcatggaccaggctcttagtgctcacatcaaaatattagat
tacagttgctcacaggatagagatacacagaagattcagtggatagatcgtttcatagag
gagctacgaaccaatgacaaatgggtgatccctgccctgaagcaaatcagagaaatctgt
agcctctttggagaagcccctcaaaacctcagtcaaacccagagaagtcctcatgtgttt
taccgccacgacctgatcaaccagctgcagcataaccacgctctggtcaccctggtggct
gagaacctctcggcctacatggagaccatgaggcagttctccaaagaagagcaggctgag
tttgacccccagacggtcagaccaggaagccgctacagccatgtccaggaagtacaggaa
cgactcaacttccttaggttcctgctaaaagatggccagctgtggctgtgcgcccctcag
gccaagcagatctggaagtgtctggctgagaatgcggtgttcctctgtgaccgggaggcc
tgcttcaaatggtactcaaagctgatgggtgatgaaccagacctggacccagacatcaat
aaggacttctttgagaacaatgtcctgcagttggacccatctttgctgacggagaacggc
atgaagtgctttgagaggttcttcaaggctgtcaactgcagggagggcaagctggtggcg
aaacgcagggcctacatgatggacgacctggaactaataggcttggactacctctggagg
gtggtcattcaaggaagtgatgacatagccagccgagctatagacctgctcaaagagatc
tataccaacctcggaccaaaactacaagtcaatcaggttgaaattcatgaagatttcatc
cagtcctgctttgaccgtctgaaggcctcctacgacaccctgtgtgtgttagatggagac
aaagatagcatcaactgtgcccgtcaggaggctattcgcatggtgcgagtccttactgtg
ctcaaagagtacatcaatgagtgcgacagtgactaccacgaggagaggactatactgcct
atgtcaagagctttccgtgggaaacatatcacactgatcgtccgtttccccaaccagggg
cgccaggtcgatgatctggatatctggtcacacaccaacgataccatcggctcggtccgc
cgaggcatcctcaacaggatcaaagctaatgctgcacatacgaagattgagcttttcatt
ggcggggaggttgttgatccagctgatgacaggaagttgattggtcagctcaatttgaag
gacaaaacgctgatcacggccaagctgacccaggtgagtgccaacatgccttcgagccca
gacagctcttctgattcatcaactggctctcctggtaaccacggcaaccacttcagcgac
gggcccaaccctgaggtggagagctgtcttcctggtgtgatcatgtcgctgcatctgcgc
tacatctccttcctgtggcaggtggctgatctgggctgcaacctcaacatgccactgctc
agagatggagctcgggttctcatgaaactcatgcctccagacaacaataccgtggagaat
ctgcgagctgtgtgtctggaccacgccaagctcggggagaacagcctcagtccttcactg
gactcgcgcttcttcggcccctcaccctcacaagtgctatacctcattgaggttgtttat
gctttgctgatgccagccagtgccactctgggcgaggacgccagcgacttccagtacaac
ttcttgaagagcggtgggctgcccctggtgttgagcatgctcaccagaaacaacttcctc
ccatcggcggacatggaaacacgccgtggcgcttacctcaatgcgctcaagatcgccaag
ctcctcctcactgctgtaggcttcgggcatgtgaaggctgtggctgaggcctgccagccc
aacgcagagggaaatattcccgtctctccgattaatcaggccactcacgaccaggctctg
gtcctccagagcgccctgcaaaacatcccaaaccctgcctcagaatgcatgctgcgcaat
gtagccatccgcctcgcccagcagatctctgatgaggtaacagaaaataatttcttccag
gcatcaaagtacatcccagacatctgtgtgatccgagctgttcagaaaatagtgtgggca
tcaggctgcggaacagttcagctcgtcttcagttcaaatgaagaaatcagcaagatctat
gaaaagacaaatgcagctaaggagccagatggggaagatgagcaggtgtgttgtgaagcc
ctggaggtgatgacactgtgctttgccctcatgcccacggctctggacaccctcagtaaa
gagaaggcttggcagaccttcatcatagacttgctactgcactgccacagcaaatctgtg
cgtcaaatggcccaggagcagtttttcctgatggcaactcgatgctgtatgggccatcga
cccctcctcttctttatcaccctcctcttcactgtgctagggagtacagccaaggagcga
gccaaacatgctggagactacttcactttactcagacaccttctgaactacgcctacaac
agcaacatcaacctgccaaacgctgaggtgctgctcaacaacgagatcgactggctaaaa
cggataagggatgaggttaagaggacaggggagaccggtgtggaggagaccatcctcgag
ggccaccttggggtgaccaaagagcttctagccttccagacaccagagaagaagtactac
atcggctgcgagaagggaggagcaaacctcattaaggagctgatcgacgacttcatcttc
ccagcatctaacgtgtacctgcagtacatgaagagcggggagttccccacagagcaggcc
atcccagtgtgcagcagccccgcctccatcaacgctggctttgagctcctcgtggcactg
gctgtaggatgtgttcgcaacctcaagcaaatagtcgacaccctgactgacatgtactac
ttaggttgcgagacactgacagagtgggagtacttgcctccgngtgggccccgacccaac
aaaggctttgtaggtttgaagaacgccggggccacctgttatatgaactctgtcatccag
cagctgtacatgatccctccaatccgcaacggcatcctggccattgaaggcaccggcact
gatgtggatgacgagatgtctggggatgagaagcaggagaatgagagtaacgtagatcct
cgtgatgaggtgttcagctaccaccatcagttcgatgataaacccgccagtaagtccgag
gacaggaaagagtacaacatcggggtactgcgccacctgcaggtcatcttcggacacctg
gctgcgtccaggcttcagtactatgtccccaggggcttctggaaacagttcaggttatgg
ggtgagccagtcaatttgagggagcagcatgatgctctggagtttttcaactcgttggtg
gacagtttggatgaagcactgaaagccctgggccaccccgccatgctgagcaaggtgctg
ggcgggtccttcgctgaccagaagatctgtcagggatgcccccacaggtatgagtgtgag
gagtcatttacaacactcaatgtagacatcaggaaccaccagaacctgttggactccatg
gagcagtacgttaaaggagatctgcttgaaggagccaatgcctaccactgtgagaagtgt
aataagaaggtggacactgtgaagcgcctgctgataaagaagctgccgccggtcctggcc
atccagctcaaacgcttcgactacgactgggagagggagtgtgccatcaagttcaatgac
tactttgagttccccagggagctggacatggagccgtacacggtagctggtgtggctaag
ctagagggcgatgacgtgaacccggagaaccaggtgatccaacagaacgagccctctgaa
cccacgcctcccggcagctccaagtatcgcctggttggagtgctggtccactcaggccag
gccagtggcggacattactactcctacataatccagaggaacggcggcgacggcgagaag
aaccgctggtataagtttgacgatggtgatgtgactgagtgcaagatggacgatgaggag
gagatgaagaaccagtgcttcggaggggaatacatgggcgaggtgttcgatcatatgatg
aagaggatgtcgtaccggaggcagaagcgctggtggaatgcctacatcctcttctatgag
cgtatggactcactggacaaggacagcgagcttgtcaaatacatctcggagctgaccatc
tcctccaccaagcccaatcaggtcaagatgccgggtgtcatcgagtgcagcgtccgcaag
cagaacgtccaattcatgcacaaccgaatgcaatacagcctggaatatttccagttcatt
aagaaacttctgacctgtaacagtgtctatttaaaccctcctccaggacaagaccacctt
ctgcctgaggcagaggagattgctatgataagtgctcagctggctgctaggttcctcttc
agcacaggtttccacaccaagaaagtggtacggggtcctgccagtgactggtatgacgcc
ctctgcatcctgctgagacacagtaagaatgtacgctattggtttgcacacaaagtcctg
tttgcattccccaaccggttctcagagtacctgcttgagtgcccgagcgctgaggtccgt
ggtgcgtttgccaagctcatcgtcttcatcgctcacttctccctgcaagacgggccgtgc
ccctcccccaccgcctcgcctggacccgctactcagggctgtgataacctcagtctaagt
gaccacctgttgagagctgtactcaacctgctcagaagagaggtttctgaacacggccgt
cacctgcagcagtacttcaacctctttgtcatgtatgcaaatctcggcctggcagaaaag
acccagctgttgaagctgaatgtccctgccactttcatgctggtcgctctggacgagggt
cccggccctcccattaagtaccagtacgctgagctgggcaagctctacactgtggtctcc
cagctggtccgttgttgtgacgtcgccgcacgcatgcagtcctcaatcaatggtaaccct
cctctccctaacccgtacggggacaccaacctgacgacccctgtgatgccggtgcagcag
ctagtggcagagatcctgtttgtgaggaccagctacgtgaagaagatcatcgaggactgc
agcaactctgaggagacggtgaagctgctgcgcttcagctgctgggagaaccctcagttc
tcctccactgtgctcagcgagctgctctggcaggtggcatactcctacacttatgaactg
aggccttacctggacttgctgctacagatcctgctcatcgaggactcctggcagacacac
aggatccacaatgtgctgaagggcattcccgacgacagagatgggctctttgacaccatc
cagcgctccaaaaaccactaccagaaacgagcctaccagtgcatcaagtgcatggtggcc
ctctttagcaactgctccgtggcttaccagatcctacagagtaatggtgaccttaaacga
aagtggacgtgggcagtggagtggttaggggacgagctggagaggagaccctacacgggg
aaccctcagtacacgtacaacaactggtcccccccggtccagagcaacgagacctccaat
ggctacttcctggagcgctcgcacagcgcacgtatgacactcgccaaggcctgtgaactc
tgtcctgaggagctcaagtgcactcagggaagcccagggaaggagcccgatgaacaggaa
gcacctgatgatcaggactcttcccctccagaggacacgtctctgtacccccactctcct
gggaccacacagtttcagcagaacaaccacccccatgggcagccgtacaccgggcctgct
gctcagcacatgaacaaccctcagcgccccggtcctgcctcggccccgactccagggccc
gcccagaccccccccaccccaggcccccgggcccactcccggcccaggcccgcgagcaca
agaaaactgggatag
DBGET
integrated database retrieval system
