Trematomus bernacchii (emerald rockcod): 117481223
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Entry
117481223 CDS
T09643
Symbol
si:ch211-199f5.1
Name
(RefSeq) protocadherin-8 isoform X1
KO
K16499
protocadherin delta 2
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117481223 (si:ch211-199f5.1)
Cell adhesion molecules [BR:
tben04515
]
Cadherins
Protocadherins
117481223 (si:ch211-199f5.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
FctA
TMEM154
Motif
Other DBs
NCBI-GeneID:
117481223
NCBI-ProteinID:
XP_033984722
LinkDB
All DBs
Position
Unknown
AA seq
989 aa
AA seq
DB search
MKLLTKGKITTEMIRGKCITYWHRWIFLFLIHQFLFASLAQSEGNTIRYQSYEEDAPGTV
IGNLAKDMSLSLSHSSKINFRMMKQFNDSFIRVRESDGELTVGERIDRERICRHTPQCLI
TFDVVHFSKERYRLIHVEVEIKDINDNSPEFPNKESVVEISENAAVGSRIPLDPAADADV
GSNYIQSYQISVNSHFTIDVLLRADGVKYAELVLMKELDRETQSSYTVELVATDGGNPYR
SGSTKITIKVTDFNDNSPVFDQNSFSVSLPEDAPVGAVILDLNAVDADEGLNGEVAYGFG
KQVSHEIRELFQVDNKSGRLTLRSPVDFEDKSTYELDVQATDLGPNPTPSVCKIIIHVTD
VNDNAPEISITPMTSISTGIAYISESAEKDSLVALISTLDRDSGVNSQVHCTLYGHDHFK
LRQAYEDSYMIVTAAALDRERISEYNLTVMAEDFGSPALRKITQYTIRLTDENDNAPHFT
KAVYEVSVVENNAPGAYITTVQASDADLDNNGKITYRLVDSVIMGSPVNTFVSLNSVSGS
IYALRSFNYEVMKLLDIHIKASDGGSPQLQSTAVIRLKIVDQNDNQPSIIEPPLYKGSAE
IFLPKDAPAGYVVTQIKTTDADEGINAQLSYKITDGGHLGFSVNKDTGKVHVSRQLTYDL
TDNVKVTVAVSDNGSPALSSTAIIHFSFIEGTVPSMPSLAQNGNEELFEWDMSIAIIIVL
AGSCSLLLLAIILITTICSRRKKETRDDDKEDIPNVENVESGHVDSLIANHNGKEFDAHP
FPENPPLASSNTTETGCEDGRPAAGIFESNSRVMEGKLKGYSTLPGYGKETVRPITIWKG
NSFTTISARDPHISGKDSGKGDSDFNDSDSDISGDVHKKESPPTNSLWACTSECKVLGHS
DRCWSPSATRPNKSMACGPHLSTFNKTASLPRNTGRENYYPALLPKTNALQSVYEKVQHQ
EFDYILVGPQTPARIQETDEMSIPEYTNS
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcttaccaagggaaagattactacggagatgatacgaggaaaatgtataact
tattggcaccggtggatttttttatttttaatccatcaatttttatttgcctcactggct
cagtccgagggaaatactattcgttaccagagctatgaagaggacgcaccaggtactgtc
atcggaaaccttgccaaggacatgtccttgagtctgtctcattcctccaagatcaatttc
aggatgatgaaacaattcaatgattcattcatcagggtaagagaaagcgacggggaactc
actgtcggggaacgaattgacagggaaagaatctgcaggcacactccacagtgtctcatc
acttttgacgttgtacatttctccaaagagcgctacagattgattcacgttgaggtagaa
ataaaggatatcaatgacaactctccggagtttccaaacaaggaatctgttgtggagatc
tcggagaatgcagcagtggggtcccgtatccctttagacccagccgcagacgctgatgtt
gggtcaaactacatccaaagctatcaaatttctgtcaacagtcatttcaccattgatgtg
ctcctgagagcggatggggttaaatatgcggaattggtgctaatgaaagagctagacagg
gagactcagtcatcatacactgtggagctggtcgccacagacggtggaaacccttacaga
tcggggtcaacaaagataactatcaaagtcactgactttaatgataatagtcccgttttt
gaccagaatagtttttcagtcagtttgccagaggacgcaccggttggcgctgttatactg
gacttgaacgcagttgatgcagatgagggtttaaacggagaggtcgcctacgggttcggg
aaacaggtttctcatgagatacgagaactttttcaagtggataataaatcaggtcggctg
acgctccggagccctgtggattttgaggacaaaagcacatatgagctagacgtgcaggcg
actgatctgggaccaaacccgaccccctccgtgtgtaaaatcataattcacgtcacagac
gttaatgacaatgccccagaaatcagtatcaccccaatgacctccatctcgactgggatt
gcatacatcagtgagtctgcagagaaggacagtctggtggcgctgatcagcaccctggat
agagactcgggtgttaacagccaggtccactgcacgttatacggccacgaccatttcaaa
ctccgacaggcttacgaggacagctacatgatagttacagcagcagccctagacagggag
aggatcagtgagtataacttgacggtcatggctgaggattttgggtcacccgcgctgaga
aagatcactcagtacaccattaggctcaccgacgagaatgacaacgcccctcactttact
aaagctgtctatgaagtttcagtggtggaaaacaacgccccgggcgcatatatcaccaca
gtgcaggccagcgacgcggatctggacaataatgggaaaattacttacagacttgtggac
agtgttatcatggggtccccagtgaatacctttgtgtctcttaattcagtgtctggctcc
atatatgcactgaggagttttaattatgaggtgatgaaactgctagacatacatatcaaa
gcaagtgatggggggtcaccacagctgcagagcacagctgtcatccgactaaaaatagtt
gatcagaatgacaaccaaccatctatcatagagccccccctttacaaaggatctgctgag
attttcctgcccaaagatgcacctgcaggatatgttgtaacccagataaagactacggat
gctgatgagggtattaatgcacagctgtcctataaaattacagacgggggtcacctggga
ttctctgtcaacaaagacacagggaaagtgcacgtgagcagacagctgacgtatgatctc
acagacaatgtcaaagtcacagtggcggtcagtgacaatggatccccggcactctcctcc
acagccattatacacttcagctttatagaaggaaccgtacccagtatgccttccttggct
caaaatggcaacgaggagctttttgaatgggacatgtccatagccataatcattgtcctg
gcagggagctgctctctcctcctgctggctatcattctcatcacaaccatttgcagccgc
cggaaaaaggagacaagggatgatgataaagaagacataccaaatgtggagaacgtggaa
agtggtcatgttgattcattgattgccaaccacaatggaaaagagtttgatgcccatcca
tttccagagaaccctccattggccagcagtaacacaacagagacaggctgtgaggatggc
aggccagcagcaggcatctttgagtcaaacagcagggtgatggagggtaaattaaagggt
tattctacgctaccgggctatgggaaagagacagtcagaccgataactatatggaagggt
aattcattcacaacaatctcagcaagagatccccacatcagtggcaaggacagtggaaaa
ggtgacagtgacttcaatgacagtgattctgacataagtggagatgtgcacaaaaaagag
tcaccgccaacaaacagtctctgggcatgtacaagcgagtgcaaagtgttgggacactcg
gaccggtgctggagcccttcggctacaaggcccaacaagagcatggcatgcggaccgcat
ctgtcaactttcaacaagactgcttcacttccaaggaacaccggaagggaaaactactac
ccagctctcctacccaaaaccaacgcgctgcaaagtgtgtacgaaaaagtccaacaccaa
gaatttgactatattctcgttggtccacagacaccagccagaatacaagagacagatgag
atgtccattccagagtacacaaactcttaa
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