KEGG   Trematomus bernacchii (emerald rockcod): 117481321
Entry
117481321         CDS       T09643                                 
Symbol
parp4
Name
(RefSeq) protein mono-ADP-ribosyltransferase PARP4 isoform X1
  KO
K10798  protein mono-ADP-ribosyltransferase 3/4 [EC:2.4.2.-]
Organism
tben  Trematomus bernacchii (emerald rockcod)
Pathway
tben03410  Base excision repair
tben04210  Apoptosis
Brite
KEGG Orthology (KO) [BR:tben00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    117481321 (parp4)
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    117481321 (parp4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tben03400]
    117481321 (parp4)
DNA repair and recombination proteins [BR:tben03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     117481321 (parp4)
SSDB
Motif
Pfam: VIT PARP4_MVP-ID PARP VWA_3 WGR-like_PARP4 VIT_2 BRCT_2 VWA BRCT VWA_2 VWA_CoxE
Other DBs
NCBI-GeneID: 117481321
NCBI-ProteinID: XP_033984855
LinkDB
Position
Unknown
AA seq 2068 aa
MLTGMAVFENCSVLFELKALPYKEKKELKSAITENGGNISFVVNKKCSLIVTNDVSNLSS
NRLRSIQKYQTPVVGVEYVNSCLEKGVILPVDEYKLDISSPSVFSPPLPPSSPRRSPISH
QVSKVPSSNTELSKREETSGKSRNILEKFRIYTETDTTLPKYPDNFQVAKYSIFEKINSR
TWCVLELQSYRGETGCRYRVVRYWKDDIGAKEAAVRDMLVHLSTSEEALEVYKTLRETLQ
ADGLQLRNNTPPQAPDLGSDPLQLLLLEEQLNTGSLSQEVGVFVELLWTEALGCLGNILT
VPINKLSLNDVSRVEGLLLQAQRKLKESDYNEVVSLIDEVYTLLPHKEPRPFPPTAKFIS
QKLDLCQLIRDVLNVSEMTLRSPMPSCLGKYRALRCSIEAAPPDTPELQAVTSLLQERKM
QVKQVLRVSRGVELQTFKSEFGNVGPLLHSSSPSNFVGVLSRGLLLPRVGVEHHGIERTD
AGNLGSGIYFSDDLSTSLKYSKPSETDGSRLLLVCDVALGQCMDVHKKDLTLTEAPEGYD
SVHGVRRTPNTHSEFVDDEYVVYRPDQVKLKFVVQYSVEGDAPKEFSPNINICAEPSTDR
DEKITEKPDNDKELTLDEIDFCTNPLDDMRSGLMDSSGQQLPLQAVHVKCKLMDLLSQVI
IFQKYTNLSSVPIEAKYVFPLEDSAAVCGFEAFINGKHVVGQVKEKETARREYKQAIKKG
HGAYLMDQDAPDVFTISVGNLPPNATVLIKVTFVSELVVTDGLIFFHLPGSVAPWQESAA
LNQTTQVTVEKVCVKDEAREFSLDMSIEMPNEITKLCCISHKVKIKKTDCKAVLSVLPGE
VMGPVGFMLSVTLSEVHLPRMWVEKHPDKDSQASMLVFYPDFEVNSERESDELVLLLDTS
ESMKGESLILAQKIALKVLSQIDNNTKLNVILFGTDHKDAFLTARPLFEAQPAAETFIKL
SSPVGGSTELWRPLRALSLLPPSRGVRNLLLLSDGHIQNAELTLQLLRDNAEHSRLFTCG
LSPTANRHMLRALAQAGGGAFEFFDTKTKHNWTDKVASQLHRMASPSCSSVSVKWQQFNP
TAPPPVQAPKQLHALFNDCHTLVYGFVPHCTQATLLGNLSGQELQTMVSTSELQKTRGTF
LHKLTARALIRDYEDGSLDTNEAEHEGKKAELKRFIIELSKEFSILSQFTSFVAIEERDS
EQPEEGFTDIPKLLAEEDVDFLPYMGWISPQVTEEEDSEDYSELMSACLMDCGLQGPSED
ESEDESEDESEDESEEDSEEDSEDYSERRSKCTMECDDGKVLGFQGISEDESEDESETLI
GSVFQSGPIIEMKHGASPLKLKKIRRGDVDTWAPPAPLCGIEVTLDSFETPLVDEEMHSY
SSCSFHPPPPPPFHMKELGHKSPFRAPLPQISGLQSRSFHRHGLMGAEVPRHHGIMFGAP
QAATHSDVLMKMSDDGPEPPVTGKAFSFSTQRHSLSYSAHSLQRQSTSRDPPAPPPPTLG
PAPPLAEMLLGSNAMSDQRSGSLVGRAFGNRALSRSNQTGTSSGLWDAGRFAPQECSLSV
STSTTETTECATGSPVKGQSGWFSSSAESLFSRQRANLFSDEQEMSGFGLRGCALEEEPV
RQDQPMKDAPPAPLDEASDVHVERRMHKSRGRPLAKPEEDGPLYGSSWGGQVHMKELAQK
SPLRAPLSQISGLQRITLRMPPPPLSFHPREQIAAEVPQRQSAMYGTTQAATDSDVMMMM
MNDRAPEPPVTGKAFSFGNALSYSAHSLQRQSTSRDPPAPPPPTLGPAPPLAERFSSSAA
SLFSTAQLLFSDEQEMAGFGLRGCALEEQDQPMKDAPPVSLDEASDVHVERRRHKSRDRS
SAMPEEDEPLCGSSWGGRVRSKGLFKSSRMRQSADQPFERKSADPEALKLRWTEIFQMQH
SEGYWQFTAELGELINLDVDLFANVFLKNKGIQSLGVKAHADILKLVATLLVLQLMREEK
IEEGKLLRTLFCLDDSPLPRPERWEEVKRAVDWVCWADRQYPCVYSRLEFGFSWESSTRQ
LLGFEGLPPFSALRGLNLQKTVPLVLVH
NT seq 6207 nt   +upstreamnt  +downstreamnt
atgttaacaggcatggctgtgtttgagaactgctctgtgctgtttgagctgaaagcgttg
ccttacaaggagaagaaggagctgaaatcagcaataacagagaatggaggcaacatttcc
tttgttgtcaataaaaagtgctctctgatagtgaccaatgatgtatccaacctgagctcc
aacaggctgcgtagcatccagaaataccaaacgcctgtggtcggggtggaatatgtgaac
agctgtctggagaagggagttattctgcctgtggatgaatacaagctggacatttcctct
ccctctgtgttctctcctcctcttcccccctcctcaccaaggcgtagtccaatctcacat
caagtgtccaaagtaccatcgagcaacaccgagctctcgaagagggaagagacttcaggg
aagagcagaaacatcttggaaaagttcagaatttatactgaaactgatacgactcttcca
aagtacccggataattttcaagtggcaaagtattcaatctttgaaaagataaacagcagg
acgtggtgtgtgctggagcttcagagttacagaggagagacaggatgccgctaccgggtg
gtcaggtactggaaggacgatatcggagccaaggaggcggcggtgagggatatgctggtg
cacctgtccacctcagaggaagctctggaggtctacaagaccctgagagagaccctgcag
gctgatggtctgcagctgaggaacaacacccccccacaggccccagacctcggctccgac
cccctccagctgctgctgctggaggagcagctgaacacaggaagcttatcacaggaagtg
ggagtgtttgtggagctgctgtggaccgaggccctgggctgcctcggcaacatcctcaca
gtccccatcaacaagctcagcctcaacgatgtgagcagggtggagggcttgttgctccag
gctcagaggaagctgaaggagtcagattataatgaggttgtgtctcttattgatgaggtt
tacaccctgctgccgcacaaagagccacgcccctttcctcccacggccaagttcatctct
cagaaactggatctctgtcagttaatccgagatgttctcaacgtgagtgaaatgaccctg
aggagccccatgccctcctgcctggggaagtaccgcgctctgaggtgcagcattgaggcg
gccccccccgacacccccgagcttcaggctgtcacctccctgctgcaggaaaggaagatg
caggtcaaacaggttctgcgtgtcagccgaggagtggagctccagacgtttaagagtgag
tttgggaacgttgggcccctgctgcactcctccagccccagcaactttgtgggagtcctg
tctcgtggtctgctgctgccccgtgttggagtggagcatcatgggattgagagaacagac
gcgggtaatctgggcagtggaatctattttagtgatgacctgagcaccagtttgaaatac
tccaagcccagcgagacagacggctctcggctgctgttggtgtgtgatgtggcgctgggt
cagtgcatggacgtccataagaaagacctcaccctgaccgaggctccggagggatacgac
agcgtgcacggggtccgccgcacccccaacactcactctgagtttgtggacgatgagtac
gtggtgtacaggcccgatcaggtgaaactgaagtttgtggtccagtacagtgtcgaggga
gacgcaccgaaggagttcagtccaaacatcaacatctgcgctgagccctctacggaccga
gatgagaagataactgagaaacctgacaatgataaggagctcacgttggatgaaattgat
ttctgtactaaccctctggacgacatgaggtctggactgatggacagctcaggtcagcag
ctccctctgcaggccgtccacgtgaagtgcaaactgatggatctgctctctcaggtcatc
atcttccagaaatacacaaatctgagctctgtgcccatcgaggcaaagtacgtcttcccc
ctggaggattctgcagcagtgtgtggatttgaagcttttattaatgggaaacatgtggtg
ggacaggtgaaagagaaagagacggcacgcagggagtacaagcaggcgataaagaaagga
catggagcctacctcatggaccaggacgcccccgatgtgttcaccatcagtgtgggcaat
ctgccgcccaatgcgaccgtcctcattaaagtcacgtttgtgtccgagctggtcgtcacg
gacgggttaattttcttccatctccctgggagcgtggctccgtggcaggagagtgcggcg
ctcaaccagaccacacaggtcactgtggagaaggtgtgtgtgaaagatgaggcgagagag
ttcagcctggacatgtcgattgagatgccgaatgagatcacaaagctgtgttgcatcagc
cataaagtcaagatcaagaaaaccgactgtaaggcagtgttgagcgtgctgccaggagag
gtcatgggtccagttggtttcatgctgtcagtcactctgtcggaggtccacctgcccagg
atgtgggtggagaaacaccccgacaaggacagccaggccagcatgttagttttctatcca
gactttgaagtgaactccgagcgtgaatctgatgaactcgtcttgctgctcgacacgtcg
gagtccatgaagggagagtctctcatcttggcccagaaaatcgccctgaaggtcctcagc
caaatcgataacaacaccaaactcaatgtcattttatttggcacagatcacaaagacgct
ttcctcacagcacggccgctctttgaagctcaaccggcagcagaaacatttatcaagctc
tcctctccagtagggggcagcactgaactgtggcggcccctgcgagctctcagcctgctg
cctccgtcccgcggtgtcaggaacctgctgctgctgtcggacggacacatccagaacgca
gagctcaccctgcagctgctcagagacaacgccgagcacagccgcctcttcacctgcggc
ctcagcccgacagccaatcggcacatgctcagagccctggctcaggccgggggcggagcc
tttgagttcttcgacacaaaaaccaaacacaactggacagataaggttgcatctcagctg
catcgtatggcgtctcccagctgcagttcagtgtcagtgaagtggcagcagttcaacccg
acagcgccccctcctgttcaagctcccaagcagctccacgctctgttcaatgactgccac
accctggtgtacggctttgtgccgcactgcactcaggccaccctgctcggaaatctcagc
ggtcaggagctccaaaccatggtttcaaccagtgagctgcagaagaccagaggcacattt
cttcacaagctcactgcgagggccctcatcagggattacgaagacggaagcctggatacc
aatgaagccgaacatgagggaaagaaagcggagctgaagcgcttcatcatcgagttaagc
aaagagttctccatcctgtctcagttcaccagctttgtggccatcgaggaaagggactca
gaacaaccagaggaaggctttacagacatcccaaagctactcgccgaggaagatgtggac
ttcctcccctacatgggctggatttctcctcaggtcactgaagaggaggactctgaggat
tattctgaattgatgtccgcatgcttaatggactgtgggctccaagggccctctgaggat
gagtctgaggatgagtctgaggatgagtctgaggatgagtctgaggaggactctgaggag
gactctgaggattattctgaaaggaggtccaaatgcactatggagtgtgatgatggtaag
gtgttagggttccaagggatctctgaggatgagtctgaggatgagtctgagactctgatt
gggtctgtgtttcaaagtggtccaataatcgaaatgaagcatggggcctctcccttaaaa
ctgaaaaaaataagaagaggggacgtggacacatgggcacctccagcacccctgtgtggc
attgaagtaacactagattcttttgaaacgcctctagtggatgaagaaatgcattcgtat
tcatcatgctcatttcatcctccaccacctcctcctttccacatgaaggaactcggccat
aaatctcctttccgtgcgcctctccctcagatcagtggtcttcaaagccgctcatttcat
cgtcatggactaatgggagcagaagttccccgacaccacggcattatgttcggtgcaccg
caagctgcaactcactcagatgtgttgatgaagatgagcgatgatgggcctgaacctcct
gtcacagggaaagcattttcattctcaacacagagacattcactgtcctattctgctcat
tcacttcaacgccagtccacctctcgagaccctccagctccccctcctcctactcttggt
ccagctcctccgctagctgaaatgttacttggctctaatgccatgtcggatcagcgcagt
gggtcactggtaggacgcgctttcgggaacagagcgctatcacgttccaatcaaacagga
acctcctctggtctctgggatgcagggaggtttgcaccccaggaatgcagcttgagtgtt
tccacctcaacaactgaaacaactgaatgtgcgactggatctcctgtgaaaggtcagtca
ggatggttttccagtagtgcagaatctttattctccagacaaagagcaaacttattttct
gatgaacaagaaatgtcaggctttggtctcaggggttgtgcgcttgaagaagaacccgtt
agacaagatcagccaatgaaagatgcccctcctgctccacttgatgaagcatcagatgtc
catgtagagcgacgtatgcacaaatccagaggtagaccattagcaaagcctgaagaagat
ggtcccttatatggaagttcttggggaggacaggtccacatgaaggaactcgcccaaaaa
tctcctctccgtgcgcctctctctcagattagtggtcttcaaaggatcactctccgtatg
cctccccctcctctctcatttcatcctcgagaacaaatagcagcagaagttccccaacgc
caaagcgccatgtacggtacaacgcaagctgcaactgattcagatgtgatgatgatgatg
atgaacgaccgtgcgcctgagcctcctgtcacagggaaagcattttcattcggaaatgca
ctgtcctattctgcacattcacttcaacgccagtccacctctcgagaccctccagctccc
cctcctcctactcttggtccagctcctccgctagctgaaaggttttccagtagtgcagca
tctttattctccacagctcagctcttattttctgatgaacaagaaatggcaggctttggt
ctcaggggttgtgcgcttgaagaacaagatcagccaatgaaagatgcccctcctgtttca
cttgatgaagcatcagatgtccatgtagagcgacggaggcacaaatccagagatagatca
tcagcaatgcctgaagaagatgagcccttatgtggaagttcttggggaggacgggtccgg
agtaaaggtctttttaagtcttccaggatgcgtcaatcagctgatcaaccattcgagagg
aagtcagcagaccctgaagcgctgaagctcagatggacagagatcttccaaatgcagcat
tcggagggttactggcagttcaccgcagagctgggtgagctgattaatttggatgtggac
ctcttcgccaacgtgttcctgaaaaacaaaggcatccagtctctgggtgtgaaggcccat
gcagacatcctgaagctggtggcgactctgctggtcctgcagctgatgagagaggagaag
atagaggagggcaaactgctccgcaccctgttctgcctggacgactcccctctgcccagg
cctgagcgttgggaggaggtgaagagggcggtggactgggtctgctgggcggaccggcag
tacccgtgtgtctacagccggctggagtttggattcagctgggagtcctccacccgccag
ctgcttggcttcgaaggcctccctcccttctccgctctcagggggctgaacctgcagaag
accgtccccctggttctggtccactga

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