Trematomus bernacchii (emerald rockcod): 117481440 Help Entry 117481440         CDS       T09643                                  Symbol col4a1 Name (RefSeq) collagen alpha-1(IV) chain   KO K06237   collagen type IV alpha Organism tben  Trematomus bernacchii (emerald rockcod) Pathway tben04382   Cornified envelope formation tben04510   Focal adhesion tben04512   ECM-receptor interaction tben04518   Integrin signaling tben04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:tben00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     117481440 (col4a1)    04518 Integrin signaling     117481440 (col4a1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     117481440 (col4a1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     117481440 (col4a1)  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     117481440 (col4a1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:tben04147]     117481440 (col4a1)    00536 Glycosaminoglycan binding proteins [BR:tben00536]     117481440 (col4a1) Exosome [BR:tben04147]  Exosomal proteins   Exosomal proteins of other cancer cells    117481440 (col4a1) Glycosaminoglycan binding proteins [BR:tben00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    117481440 (col4a1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  117481440 NCBI-ProteinID:  XP_033985011 LinkDB All DBs Position Unknown AA seq 1643 aa AA seqDB search MLLPSGTLLLLLAALYSTVDLTGAEGCGASCGKCDCSGVKGAKGERGFNGLQGNMGFPGM HGPEGPPGPMGPTGTFGESGAPGLKGVRGPPGLPGFPGNSGLPGINGHDGAPGSQGIPGC NGTKGDRGLDGTSGFPGLQGPPGISGIPGMKGDPGGVIGIVPLRGDKGFAGTPGLPGTSG FPGPVGPPGRTGFQGPKGDSGLPGPPGEKGDKLAFVSEKGEKGDPGFRGPPGPPGTTLGV EGGRPTVHVPGPQGERGLKGDQGDKGFCVPHLNGIKGEIGPPGSRGKFGKDGDDGSKGEK GFPGTAGFAGSQGEKGEKGPPGYGNGAPGPPGPSGNPGFQGVKGFPGPQGEAGPPGRHIE GPRGETGQKGHFGEKGDRGLDGESLAGPPGQPGNPGLPGPAGLPLDPNECNNEKGAPGPA GPPGLQGELGQKGDIGDTCVQCEGSGAPGLPGPHGPKGDQGPPGPVGGKGQKGTSGSSGQ TGNPGSQGVPGLIGATGAVGEPGDVLGVDGLKGEKGLPGLSGTPGRPGLNGQPGKDGFPG IQGHKGESAREGIKGDRGLDGNPGLIGPLGERGPPGQPGFGRTGESGEKGGHGRQGTPGT PGQPGVKGDPGQGVSTPGSQGVPGAHGKTGIPGLQGDRGLQGDRGLPGFPGQKGEYGPQG IGLPGPTGPKGINGIPGAPGLPGETGSGGQDGLTGKSGTPGPKGDPGRGLPGPKGLQGQP GITGFPGDKGGFGRPGIPGLEGQTGPTGDQGIQGDVGVPGPPGLVGVPGSPGKGSPGAPG PPGPAGESGPYGRGGAKGDRGYPGALGLDMPGPQGEKGQPGVPGTSGYKGLPGQTGLPGR EGFLGTQGIKGEMGVIGTPGIPGFPGSPGTSGSHGLIGDPGITGPRGSIGDSGVKGERGD RGLQGPPGNMSEVDMEHMKGEKGDLGNRGGAGGTGEKGHRGLPGNPGMSGKNGESGSPGQ PGEKGDSGFPGEPGNFGQPGQKGTVGEMGIPGSSGPQGTKGDSGTTGHTGFRGTDGQKGD NGTGGDPGIGLPGSSGVKGQTGQPGFPGTAGERGLKGHEGMSGKAGLQGTKGNKGSVGYS GQSGRPGEKGTPGLAGSAGETGPDGRTGEGGLQGPPGVLGEKGDPGIDGIPGSSGERGDP GLSGQGFPGSPGVLGGKGDTGSPGFPGTPGHPGVSGIKGDKGLSGSHGPQGESGERGYPG NSLEGPKGESGALGQTGVTGSPGVPGTSGVSGRDSPKGDKGGQGQPGFQGESGHKGDAGT PGLPGQDGLPGLFGQKGERGLHGVPGFPGTKGQGGDIGFKGELGDNGFQGEKGIDGPPGP PGPQTYIKGDIGFTGTQGIPGPQGPYGLPGQKGHQGVTGVQGPKGEDGIPGYNGQAGSKG NSGVTGPQGHRGYPGPPGPDGVPGQIGHTGPSSMDHGFLVTRHSQTVEVPTCPEGTRLIY DGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEP MPMNMAPITGLGIKPFISRCSVCEAPAMVIAVHSQTIMIPSCPHGWDSLWIGYSFVMHTS AGAEGSGQALASPGSCMEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDEDMFTKPVPT TLKAGSLRTHISRCQVCMKRTYT NT seq 4932 nt NT seq  +upstreamnt  +downstreamnt atgctgttaccgtccggcaccctgttactgctgctggcggctctctactccactgtggac ctgacaggggctgagggctgcggggcttcatgtggaaaatgtgactgcagtggtgtgaaa ggagcaaagggtgagcgtggattcaatggtcttcagggtaatatgggatttccagggatg catggacctgaaggtcctccaggaccaatgggcccaacgggcacttttggtgaatctgga gctcccgggttgaaaggagtgaggggtcctcctggtctgccaggtttcccaggaaactcc ggactaccgggcattaacggacatgacggtgcacccggttcgcaaggtatcccaggatgc aatgggaccaaaggagatagaggactggatggcacctctggttttcccggtcttcaagga cctcccggcatctcaggaattcctggaatgaagggtgaccctggtggtgtgatcgggatt gttcccctgagaggagacaaaggatttgctggcacacctggactacctggaacaagtgga tttcctggaccagttggacctccaggacgaacaggctttcaaggacccaaaggagattct ggcctccctggccctcctggagagaagggtgacaagttggcctttgtgagtgagaaagga gagaagggtgatccaggatttcgtggcccccccggccctcctgggacaacactgggagtg gaaggaggacgtcccacagtgcatgtacctggaccacagggtgaaagaggacttaaggga gaccaaggagacaaaggcttttgcgtccctcatctaaatggtatcaaaggtgaaattgga cctcctggatcaagaggaaaatttggcaaggatggagatgatgggtcgaagggagaaaaa ggctttcctggaactgctggattcgctggttcccagggtgaaaagggagaaaaaggacca ccaggatatggtaatggtgcccctggtcctcccggcccaagtggtaacccagggttccaa ggagtaaaaggttttcctggtcctcagggagaggcaggtcctccaggccggcacattgag gggcctcgtggagagacgggacagaaaggacactttggagagaaaggagacaggggactg gatggagagtctctcgctggacctccgggacaaccgggaaaccctggactccctggacca gctggactaccacttgaccctaatgaatgcaacaatgagaaaggagctcctggcccagct ggacctccagggttacaaggagaattaggacagaaaggtgacataggagatacctgtgtt caatgtgaaggttccggcgcacctggattacctggcccacacggccctaaaggagatcag gggcctccagggccagtaggagggaagggacaaaagggtacttctggctcttctggacaa actggaaatcctggttctcaaggtgttcccgggttgattggagccactggtgctgttggc gagccaggggacgttcttggagttgatggtttgaaaggagagaaaggtctacctggtctt tctggtactccagggaggcccggcctgaatggacagccggggaaagatggtttccctggt atacaaggccacaaaggagaatcggccagggagggcataaagggtgaccgtggactagat gggaaccctggtctgatcgggcctctaggagagaggggtccaccgggccagcctggcttc ggtcgaacgggagagtctggagagaaaggcggtcatggaaggcagggaactcctggaact cctggacaacctggtgttaaaggtgatccaggtcaaggtgtgagcactcctggatctcag ggagtacctggagcacacggcaaaactggcattcctggacttcaaggtgacagaggcctt cagggagatcgagggttgcccggtttcccaggacagaagggtgaatatggaccccagggt attggattacctggcccaactggtcctaaaggaatcaatggaataccaggagctccagga ttaccaggagagacaggaagtggtggacaggatggcttgactggaaaaagtggtacacct ggaccaaaaggtgatccagggcgaggtcttccaggcccaaaaggtttgcaaggccaacca ggaattactggcttcccgggagataagggtggctttggacgacctggtattcctggacta gaaggccagacaggacctacgggagatcagggaatccaaggtgatgtgggagtcccagga cctcctggactggtcggcgtgccaggttctccaggtaaaggttcacccggagcccccgga ccaccaggaccagctggagagtccggaccatatggtagaggaggtgcaaagggagacagg ggctaccccggtgctctcggtctggacatgccggggcctcagggagagaagggacaaccc ggggtcccaggaacgtcaggatataaaggactgcccggacaaacaggtctacctggcagg gaaggattccttggaacacaaggtattaaaggtgaaatgggtgtcatagggacaccggga ataccaggatttcctggatcacctggtacgtctggatctcatggactgataggtgatcca ggtattactgggccaagaggtagtattggagattcaggagtcaaaggagagaggggagat cgaggtctgcagggtcctcctggaaacatgagtgaagtggacatggagcacatgaagggg gagaagggagaccttggaaacagaggtggcgctgggggcactggagagaaaggccaccga ggacttcctggtaaccctggaatgtcaggcaaaaatggagagtctggatcacctggccaa ccaggggagaaaggagactctggttttcctggagagccgggcaattttggacaacctgga cagaaaggcactgtaggagagatgggaatccccggttcgtctggtccacagggtactaaa ggagattctggtacaacaggacataccggattcagaggcacagatggacagaaaggtgac aacggaacaggtggtgacccaggtattgggctcccaggatcttcaggagtaaagggtcag acaggccagcccggattcccaggaactgcaggagagaggggtctgaagggtcacgagggg atgtccggcaaggcaggactgcaaggaaccaagggaaacaagggaagcgtcgggtattca ggtcagtcaggtagaccaggtgagaagggaactcctgggctggcggggtctgcaggagaa actggtcctgatggtcgcactggggaaggcggcttgcagggacctcctggtgttcttgga gagaagggagatcctggaatagatggcatcccaggatcctcaggggaaagaggagaccca ggtttatctggccaaggtttccctggatctcctggagtgcttggtggcaaaggtgacaca ggcagtcctggtttccctggcactccaggtcatcctggcgtctctggtatcaaaggagac aagggactttcaggctcacacggaccccagggcgagtcaggcgagagggggtacccaggt aactccctcgagggccctaagggagagtcgggagcattaggacaaaccggagtaacagga tctccaggagtaccagggacctctggtgtgtcaggcagagacagccctaagggagacaaa ggaggccagggtcagcctggtttccagggagagtcgggacataagggtgatgctggaact cctggactccctggacaagatggccttccaggtctttttggacagaagggagagagggga ttgcatggagtccctggcttcccaggtacaaagggtcaagggggtgacattggattcaaa ggagaacttggagacaatggattccaaggagagaagggcattgatggccccccaggtccc cctggccctcaaacctacatcaaaggagacattgggttcacaggtactcagggcataccg ggtccccaggggccatatgggctccctggacaaaaaggacatcaaggtgtgacaggtgtt caagggccaaaaggtgaagatggcattcctggatataatggtcaggctggatccaaagga aactctggtgttacagggccacagggacacagaggataccctggccccccaggacctgat ggtgttccaggtcaaattggtcacaccgggccctcatccatggatcacgggttcctggta acccgccacagccaaacggtggaggttccaacctgtcctgagggaacccggctcatatat gacggctattccttgctctacgtacaaggcaacgaacgctcacatggacaggacttgggt acggccggcagctgtctgaggaagttcagccccatgcccttcctgttctgcaacatcaac aatgtgtgcaacttcgcctcccgtaacgattactcctactggctcacctcccctgagcca atgcccatgaacatggcacctatcaccggtctaggcatcaaacccttcatcagcagatgt tctgtgtgtgaagctccagccatggtgatagcggttcacagtcagaccatcatgatccca tcatgcccccatggctgggactctctatggattggatactctttcgtcatgcacaccagt gccggtgcagagggctccggccaggctctggcgtctcctggttcctgtatggaggagttc cgcagtgctcccttcatcgagtgtcacggtcgtggaacctgcaactactatgctaactcc tacagcttttggcttgccaccattgaagacgaggacatgtttacgaaacctgtcccgaca acgctaaaagccggaagtctccgaacacacataagccgctgtcaggtgtgcatgaagagg acatatacataa

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