Trematomus bernacchii (emerald rockcod): 117481440
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Entry
117481440 CDS
T09643
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04510
Focal adhesion
tben04512
ECM-receptor interaction
tben04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117481440 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117481440 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117481440 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tben04147
]
117481440 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
tben00536
]
117481440 (col4a1)
Exosome [BR:
tben04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117481440 (col4a1)
Glycosaminoglycan binding proteins [BR:
tben00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117481440 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117481440
NCBI-ProteinID:
XP_033985011
LinkDB
All DBs
Position
Unknown
AA seq
1643 aa
AA seq
DB search
MLLPSGTLLLLLAALYSTVDLTGAEGCGASCGKCDCSGVKGAKGERGFNGLQGNMGFPGM
HGPEGPPGPMGPTGTFGESGAPGLKGVRGPPGLPGFPGNSGLPGINGHDGAPGSQGIPGC
NGTKGDRGLDGTSGFPGLQGPPGISGIPGMKGDPGGVIGIVPLRGDKGFAGTPGLPGTSG
FPGPVGPPGRTGFQGPKGDSGLPGPPGEKGDKLAFVSEKGEKGDPGFRGPPGPPGTTLGV
EGGRPTVHVPGPQGERGLKGDQGDKGFCVPHLNGIKGEIGPPGSRGKFGKDGDDGSKGEK
GFPGTAGFAGSQGEKGEKGPPGYGNGAPGPPGPSGNPGFQGVKGFPGPQGEAGPPGRHIE
GPRGETGQKGHFGEKGDRGLDGESLAGPPGQPGNPGLPGPAGLPLDPNECNNEKGAPGPA
GPPGLQGELGQKGDIGDTCVQCEGSGAPGLPGPHGPKGDQGPPGPVGGKGQKGTSGSSGQ
TGNPGSQGVPGLIGATGAVGEPGDVLGVDGLKGEKGLPGLSGTPGRPGLNGQPGKDGFPG
IQGHKGESAREGIKGDRGLDGNPGLIGPLGERGPPGQPGFGRTGESGEKGGHGRQGTPGT
PGQPGVKGDPGQGVSTPGSQGVPGAHGKTGIPGLQGDRGLQGDRGLPGFPGQKGEYGPQG
IGLPGPTGPKGINGIPGAPGLPGETGSGGQDGLTGKSGTPGPKGDPGRGLPGPKGLQGQP
GITGFPGDKGGFGRPGIPGLEGQTGPTGDQGIQGDVGVPGPPGLVGVPGSPGKGSPGAPG
PPGPAGESGPYGRGGAKGDRGYPGALGLDMPGPQGEKGQPGVPGTSGYKGLPGQTGLPGR
EGFLGTQGIKGEMGVIGTPGIPGFPGSPGTSGSHGLIGDPGITGPRGSIGDSGVKGERGD
RGLQGPPGNMSEVDMEHMKGEKGDLGNRGGAGGTGEKGHRGLPGNPGMSGKNGESGSPGQ
PGEKGDSGFPGEPGNFGQPGQKGTVGEMGIPGSSGPQGTKGDSGTTGHTGFRGTDGQKGD
NGTGGDPGIGLPGSSGVKGQTGQPGFPGTAGERGLKGHEGMSGKAGLQGTKGNKGSVGYS
GQSGRPGEKGTPGLAGSAGETGPDGRTGEGGLQGPPGVLGEKGDPGIDGIPGSSGERGDP
GLSGQGFPGSPGVLGGKGDTGSPGFPGTPGHPGVSGIKGDKGLSGSHGPQGESGERGYPG
NSLEGPKGESGALGQTGVTGSPGVPGTSGVSGRDSPKGDKGGQGQPGFQGESGHKGDAGT
PGLPGQDGLPGLFGQKGERGLHGVPGFPGTKGQGGDIGFKGELGDNGFQGEKGIDGPPGP
PGPQTYIKGDIGFTGTQGIPGPQGPYGLPGQKGHQGVTGVQGPKGEDGIPGYNGQAGSKG
NSGVTGPQGHRGYPGPPGPDGVPGQIGHTGPSSMDHGFLVTRHSQTVEVPTCPEGTRLIY
DGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEP
MPMNMAPITGLGIKPFISRCSVCEAPAMVIAVHSQTIMIPSCPHGWDSLWIGYSFVMHTS
AGAEGSGQALASPGSCMEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDEDMFTKPVPT
TLKAGSLRTHISRCQVCMKRTYT
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atgctgttaccgtccggcaccctgttactgctgctggcggctctctactccactgtggac
ctgacaggggctgagggctgcggggcttcatgtggaaaatgtgactgcagtggtgtgaaa
ggagcaaagggtgagcgtggattcaatggtcttcagggtaatatgggatttccagggatg
catggacctgaaggtcctccaggaccaatgggcccaacgggcacttttggtgaatctgga
gctcccgggttgaaaggagtgaggggtcctcctggtctgccaggtttcccaggaaactcc
ggactaccgggcattaacggacatgacggtgcacccggttcgcaaggtatcccaggatgc
aatgggaccaaaggagatagaggactggatggcacctctggttttcccggtcttcaagga
cctcccggcatctcaggaattcctggaatgaagggtgaccctggtggtgtgatcgggatt
gttcccctgagaggagacaaaggatttgctggcacacctggactacctggaacaagtgga
tttcctggaccagttggacctccaggacgaacaggctttcaaggacccaaaggagattct
ggcctccctggccctcctggagagaagggtgacaagttggcctttgtgagtgagaaagga
gagaagggtgatccaggatttcgtggcccccccggccctcctgggacaacactgggagtg
gaaggaggacgtcccacagtgcatgtacctggaccacagggtgaaagaggacttaaggga
gaccaaggagacaaaggcttttgcgtccctcatctaaatggtatcaaaggtgaaattgga
cctcctggatcaagaggaaaatttggcaaggatggagatgatgggtcgaagggagaaaaa
ggctttcctggaactgctggattcgctggttcccagggtgaaaagggagaaaaaggacca
ccaggatatggtaatggtgcccctggtcctcccggcccaagtggtaacccagggttccaa
ggagtaaaaggttttcctggtcctcagggagaggcaggtcctccaggccggcacattgag
gggcctcgtggagagacgggacagaaaggacactttggagagaaaggagacaggggactg
gatggagagtctctcgctggacctccgggacaaccgggaaaccctggactccctggacca
gctggactaccacttgaccctaatgaatgcaacaatgagaaaggagctcctggcccagct
ggacctccagggttacaaggagaattaggacagaaaggtgacataggagatacctgtgtt
caatgtgaaggttccggcgcacctggattacctggcccacacggccctaaaggagatcag
gggcctccagggccagtaggagggaagggacaaaagggtacttctggctcttctggacaa
actggaaatcctggttctcaaggtgttcccgggttgattggagccactggtgctgttggc
gagccaggggacgttcttggagttgatggtttgaaaggagagaaaggtctacctggtctt
tctggtactccagggaggcccggcctgaatggacagccggggaaagatggtttccctggt
atacaaggccacaaaggagaatcggccagggagggcataaagggtgaccgtggactagat
gggaaccctggtctgatcgggcctctaggagagaggggtccaccgggccagcctggcttc
ggtcgaacgggagagtctggagagaaaggcggtcatggaaggcagggaactcctggaact
cctggacaacctggtgttaaaggtgatccaggtcaaggtgtgagcactcctggatctcag
ggagtacctggagcacacggcaaaactggcattcctggacttcaaggtgacagaggcctt
cagggagatcgagggttgcccggtttcccaggacagaagggtgaatatggaccccagggt
attggattacctggcccaactggtcctaaaggaatcaatggaataccaggagctccagga
ttaccaggagagacaggaagtggtggacaggatggcttgactggaaaaagtggtacacct
ggaccaaaaggtgatccagggcgaggtcttccaggcccaaaaggtttgcaaggccaacca
ggaattactggcttcccgggagataagggtggctttggacgacctggtattcctggacta
gaaggccagacaggacctacgggagatcagggaatccaaggtgatgtgggagtcccagga
cctcctggactggtcggcgtgccaggttctccaggtaaaggttcacccggagcccccgga
ccaccaggaccagctggagagtccggaccatatggtagaggaggtgcaaagggagacagg
ggctaccccggtgctctcggtctggacatgccggggcctcagggagagaagggacaaccc
ggggtcccaggaacgtcaggatataaaggactgcccggacaaacaggtctacctggcagg
gaaggattccttggaacacaaggtattaaaggtgaaatgggtgtcatagggacaccggga
ataccaggatttcctggatcacctggtacgtctggatctcatggactgataggtgatcca
ggtattactgggccaagaggtagtattggagattcaggagtcaaaggagagaggggagat
cgaggtctgcagggtcctcctggaaacatgagtgaagtggacatggagcacatgaagggg
gagaagggagaccttggaaacagaggtggcgctgggggcactggagagaaaggccaccga
ggacttcctggtaaccctggaatgtcaggcaaaaatggagagtctggatcacctggccaa
ccaggggagaaaggagactctggttttcctggagagccgggcaattttggacaacctgga
cagaaaggcactgtaggagagatgggaatccccggttcgtctggtccacagggtactaaa
ggagattctggtacaacaggacataccggattcagaggcacagatggacagaaaggtgac
aacggaacaggtggtgacccaggtattgggctcccaggatcttcaggagtaaagggtcag
acaggccagcccggattcccaggaactgcaggagagaggggtctgaagggtcacgagggg
atgtccggcaaggcaggactgcaaggaaccaagggaaacaagggaagcgtcgggtattca
ggtcagtcaggtagaccaggtgagaagggaactcctgggctggcggggtctgcaggagaa
actggtcctgatggtcgcactggggaaggcggcttgcagggacctcctggtgttcttgga
gagaagggagatcctggaatagatggcatcccaggatcctcaggggaaagaggagaccca
ggtttatctggccaaggtttccctggatctcctggagtgcttggtggcaaaggtgacaca
ggcagtcctggtttccctggcactccaggtcatcctggcgtctctggtatcaaaggagac
aagggactttcaggctcacacggaccccagggcgagtcaggcgagagggggtacccaggt
aactccctcgagggccctaagggagagtcgggagcattaggacaaaccggagtaacagga
tctccaggagtaccagggacctctggtgtgtcaggcagagacagccctaagggagacaaa
ggaggccagggtcagcctggtttccagggagagtcgggacataagggtgatgctggaact
cctggactccctggacaagatggccttccaggtctttttggacagaagggagagagggga
ttgcatggagtccctggcttcccaggtacaaagggtcaagggggtgacattggattcaaa
ggagaacttggagacaatggattccaaggagagaagggcattgatggccccccaggtccc
cctggccctcaaacctacatcaaaggagacattgggttcacaggtactcagggcataccg
ggtccccaggggccatatgggctccctggacaaaaaggacatcaaggtgtgacaggtgtt
caagggccaaaaggtgaagatggcattcctggatataatggtcaggctggatccaaagga
aactctggtgttacagggccacagggacacagaggataccctggccccccaggacctgat
ggtgttccaggtcaaattggtcacaccgggccctcatccatggatcacgggttcctggta
acccgccacagccaaacggtggaggttccaacctgtcctgagggaacccggctcatatat
gacggctattccttgctctacgtacaaggcaacgaacgctcacatggacaggacttgggt
acggccggcagctgtctgaggaagttcagccccatgcccttcctgttctgcaacatcaac
aatgtgtgcaacttcgcctcccgtaacgattactcctactggctcacctcccctgagcca
atgcccatgaacatggcacctatcaccggtctaggcatcaaacccttcatcagcagatgt
tctgtgtgtgaagctccagccatggtgatagcggttcacagtcagaccatcatgatccca
tcatgcccccatggctgggactctctatggattggatactctttcgtcatgcacaccagt
gccggtgcagagggctccggccaggctctggcgtctcctggttcctgtatggaggagttc
cgcagtgctcccttcatcgagtgtcacggtcgtggaacctgcaactactatgctaactcc
tacagcttttggcttgccaccattgaagacgaggacatgtttacgaaacctgtcccgaca
acgctaaaagccggaagtctccgaacacacataagccgctgtcaggtgtgcatgaagagg
acatatacataa
DBGET
integrated database retrieval system
