Trematomus bernacchii (emerald rockcod): 117481449
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Entry
117481449 CDS
T09643
Symbol
htt
Name
(RefSeq) LOW QUALITY PROTEIN: huntingtin
KO
K04533
huntingtin
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117481449 (htt)
04131 Membrane trafficking [BR:
tben04131
]
117481449 (htt)
03029 Mitochondrial biogenesis [BR:
tben03029
]
117481449 (htt)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117481449 (htt)
Membrane trafficking [BR:
tben04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
117481449 (htt)
Mitochondrial biogenesis [BR:
tben03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
117481449 (htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_EF3_N
HEAT_2
HEAT_ECM29
Motif
Other DBs
NCBI-GeneID:
117481449
NCBI-ProteinID:
XP_033985029
LinkDB
All DBs
Position
Unknown
AA seq
3139 aa
AA seq
DB search
MATMEKLMKAFESLKSFQQQQGPPTAEELVQRQKKEQATTKKDRVTHCLTICENIVAQSL
RTSPEFQKLLGIAMEMFLLCSDDSESDVRMVADECLNKIIKALMDSNLPRLQLELYKEIK
KNGASRSLRAALWRFAELAHLIRPQKCRPYLVNLLPCLSRITKRQEETVQETLAAAMPKI
MSALGHFANDGEIKVLLKSFVANLKSSSPTIRRTAASSAVSVCQHSRRASYFYTWLLNVL
LGLLVPVDEEHPTHLILGVLLTLRYLMPLLQQQVNTSSLKGSFGVMRKEADVQPSPEQLL
QVYELTLHYTQHWDHNVVTASLELLQQMFRTPPPELLHMLITAGSILHGSVFRQDAESRA
RSGSILELIGKMLSGEEDGLEDDAERTEVTFTASVVGADGSSAAQVDIITEQPRSSQHTL
QPGESTDLSASSEQGGGGGGGTSASDTPESPNDNEEEMLSRSSSGGANVTPETADYTTPE
TEAVPLGDGGPLLSTNDRSLPPSDSSQTTTEGPDSAVTPSDVAELVLDGSESQYSGMQIG
TLQDEEDEGAAPSSQEEPQEPFIQSALALSKPHLFDGRGHNRQGSDSSVDRFIPKDEPAE
PEPDIKPSRIKGPIGHYTDQGAEPLVHCVRLLAASFLLTGEKHGLTPDKEVRVSVKALAV
SCIGAAAALHPEAFFNSLYLEPLDGTPVVEQQYISDMLGLAAHGDPQIRGAIAILCGAII
QAALTKTRYNIHSWLASVQSATGNPLSLVDLLPLLQRTLKDESSVTCKMACSAVRHCLMT
VCSSTLSELGLQLMIDLLALRDSSYWLVRTELLETLAEMDFRLVNFLERRTEHLHKGDHH
YTGRLCLQDRVLNDLVIRLLGDDDPRVRHVAASAVSRMVSRLFYDCDQGQVDPVVAIARD
QSSVYLQLLMHEAQPPSQFTVSTITRTYRGYNLSNNVSDVTIENNLSRVVTAISHAFTSS
TSKALTFGCCEALCLLATHFPVCTWSTGWHCGYVSSSSSFSSRSSLNRSRGRALSVSQTG
SAPASSASSSSAPDTERRTLTVGMANMVLSLLSSAWFPLDLASHQDALLLSGNLLAAVAP
KCMRNPWAGEEEGSSGSTNASGGPNKMEEPWAGLSERSLVAMVEQLFSHILKILNICAHV
LDDTPPGPAIKATLPSLSNTPSLSPIRRKGKEKDIVEPSAAPMSPKKSVDINTGRPADGT
GSTAVNKSTTVGNFYHLPTYLKLYDVLKATHANYKVTLDLHSSQEKFGGFLRSALDVLSQ
LLELTTLHDISKCVEEILSYLKSCFSREPTMATVCVQQLLKTLFGTNLASQCESVLSGPS
RSQGKALRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQEQDTSGWFDVMQK
ASNQLRSNIANATRQRGDKNAIHNHIRLFEPLVIKALKQYTTSTSVALQRQVLDLLAQLV
QLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEAIIPNIFFFLVLLSYERYHSKQIIS
IPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGSNKADAGKELETQKEVVVSMLL
RLVQHHQVLEMFILVLQQCHKENEDKWKRLSRQIADVILPMISKQQMHLDSPEALGVLNT
LFETVAPSSLRPVDMLLKSMFTTPVTMASVGTVQLWVSGILAVLRVLVSQSTEDIVLSRV
HELSLTPHLLSCHTIRRLHQQSPSPSDPPAADTLCGQDGEAQKALPEETFARFLLQLVGV
LLDDISSRQVKVDITEQQHTFYCQQLGTLLMCLIHVFKSGMFRRITAAATRLLKGEGGGV
QPGAEAGLFYPLEALNSMVQWMITTHPSLVLLWCQVLLIIDYTNYSWWAEVHQTPRRQSL
SCTKLLSPHSSGEGEEEKHETRLAMVNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNH
VQDLISLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCDNLSAPTMLKKTLQCLEGIHLS
QSGSLLVLYVDKLLNTPFRVLARMVDTLACRRVEMLLAETLQNSKAQVPVEELNRIQEYL
QTSGLAQRHQRFYSLLDRFRATVTDTCSPTPPVTSHPLDGDPPPAPELVNADKEWYVALV
KSQCCLRGDVSLLETTELLTKLPPADLLNIMSCKEFNLSLLCPCLSMGMQRCARGQGSLL
LETALQVTLERLEGVTGSLPVPHQSFLPPAQPQPYWKQLADVYDEPGFYPRVLSLCRALS
QYLLSVSQLPSSLHIPPDKEHLITSFTCTAAEVVAWRLLQNQLPLSVDLQWALSCLCLAL
QQPCVWNKLSTAEYATHTCSLIYSLRLIIVAVAVSPGDQLLHPEKKKTRAERDAEGDEVD
TAHADHICEWQACEIMAELVEGLQSILSLGHHRNSAFPAFLTPTLRNIVISLSRLPLVNS
YTRVPPLVWKLGWSPQPGGEYGTTLPEIPVDFLQEKDVFREFLYRINTLGWSSRTQFEET
WATLLGVLVTQPITMDQEEETQQEEDLERTQLNVLAVQAITSLVLSAMTLPTAGNPAVSC
LEQQPRNKSLKALETRFGRKLAVIRGEVEREIQSLVSKRDNVHTHHPYHAWDPVPSLSAA
SAAGTLISHEKLLLQINTEREMGNMDYKLGQVSIHSVWLGNNITPLREEEWGEDEEDEAD
TPAPTSPPTSPINSRKHRAGVDIHSCSQFLLELYSQWLIPGSPSNRRTPTILISEVVRSL
LAVSDLFTERNQFDMMFSTLMELQKLHPPEDEILNQYLVPAICKAAAVLGMDKAIAEPVC
RLLETTLRSTHLPSRMGALHGVLYVLECDLLDDTAKQLIPTISEYLLSNLRAIAHCVNLH
NQQHVLVMCAVAFYMMENYPLDVGAEFMAGIIQVCGVMVSASEDSTPSVIYHCVLRGLER
LLLSEQLSRVDGEALVKLSVDRVNMPSPHRAMAALGLMLTCMYTGKEKASPASRPAHSDP
QAPDSESIIVAMERVSVLFDRIRKGLPSEARVVARILPQFLDDFFPPQDVMNKVIGEFLS
NQQPYPQFMATVVYKVFQTLHATGQSSMVRDWVLLSLSNFTQRTPVAMAMWSLSCFFVSA
STSQWISALLPHVISRMGSSEVVDVNLFCLVAMDFYRHQIDEELDRRAFQSVFETVASPG
SPYHQLLGCLQSIHQDTSL
NT seq
9420 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaaattgatgaaggcctttgagtctttgaagtcattccagcagcag
cagggaccaccaaccgctgaggagcttgtccagaggcagaaaaaagaacaggctactaca
aagaaggacagggtcacccactgtctgacaatatgtgaaaacatcgtggctcagtctctg
agaacgtctccagagtttcagaaactgctgggcatcgctatggagatgttcctgctctgc
agtgatgacagcgaatcagatgtccggatggtagctgacgagtgcctgaacaaaatcatt
aaagcactgatggactccaacctgcctcgactgcagctggagctgtacaaagaaattaaa
aagaatggtgcctctcggagtctgagggcggctctgtggaggtttgctgagctcgctcac
ctcatcagaccacagaaatgcagaccctacctggtgaacctgctgccgtgcctctcccga
atcaccaagcggcaggaggagactgtgcaggagactctggctgctgcgatgcccaagatc
atgtccgccttggggcacttcgccaatgacggcgagatcaaggtgctgctgaagtcgttt
gtggccaacctgaagtccagctccccgaccatcagacgcacagcagccagctccgccgtc
agcgtgtgccaacactccagacgtgccagctacttctacacctggctccttaatgtgctg
ctgggtctgctggttcctgtggatgaggagcatcccacacacctaattctgggggtcctg
ttgacccttcgctacctgatgcctctgctgcagcagcaggttaacacatccagcctcaaa
ggaagcttcggagtcatgaggaaggaggccgacgtccagccctcacctgagcagctccta
caggtgtacgagctgaccttacactacacgcagcactgggatcacaatgtggtcacggcg
tctctggagctcctgcagcagatgttcaggacccccccgccagagctcctgcacatgctc
atcacagcgggcagcatcctgcatggctccgtgttccggcaggacgcagagagtcgtgca
cgctccggcagcatcctggagctcattggtaaaatgctctctggagaggaggacggcttg
gaggatgacgctgagagaacagaggtcacattcacagcgtcagtcgttggtgcggacggc
tcctcggcggcccaggtggacatcataaccgagcagccgcgctcctcccaacataccctg
cagcccggcgagtccacggacctcagtgcctcctcggagcagggcggcggcggaggaggc
gggacttcggcttcagacactcctgagtcacccaacgacaacgaggaggaaatgctcagt
cgcagctccagcggtggggccaacgttaccccagagacggccgactacaccaccccagag
acggaggcagtacccttaggagacggcgggcctttgctcagcacaaacgaccgctccctt
ccacccagcgactcctcgcagaccaccacggaggggccggactcagctgtcaccccttcg
gatgtagcagaactggtgctggacggcagtgagagccagtactcagggatgcagatcggg
acattacaggatgaagaagatgaaggagcagcaccttcctcccaggaagagccccaggaa
cccttcatccagtcagctctggctctgagcaaacctcatctcttcgacggccgaggccac
aaccggcagggttcggacagcagcgtggaccgcttcataccaaaggacgagcccgccgaa
cctgaacctgacatcaagccatcacggataaaaggtccaatcggacattacacagaccaa
ggggcggagccactggtgcactgtgtacggcttctcgctgcttccttcctactgacggga
gagaaacatggtctgacccctgacaaggaggtgcgagtgagcgtgaaggctctggcggtc
agctgcatcggggctgcagcagcgctccaccctgaagccttctttaattccctctacctg
gagccgctggacggcactccagtagtagaacagcagtatatcagtgacatgctgggcctg
gctgcccacggggacccccagatcagaggggccatagccatcctctgcggagccatcata
caagccgcactcaccaaaacacgctacaacatacacagctggctggccagtgtgcagagt
gcaacaggtaaccctctgtccctggtggacttgttgcctttgctccagagaactctgaaa
gatgaatcctccgtcacctgcaagatggcttgctctgcagtgaggcactgcctcatgacc
gtgtgcagcagtaccctcagtgagctgggcctgcagttgatgatagaccttcttgctctg
agggactcgtcctattggctcgttcgcactgagctcttggagactctggcagagatggac
ttccggttagtgaatttcttggagagaagaacagaacatttgcacaaaggggatcatcac
tacactgggcggctgtgcctgcaggaccgagtcctgaacgatttggtcatccgtctgttg
ggagatgacgaccccagagtccgacacgtggcagcgtcagctgtcagcaggatggtttcc
agattgttctacgactgcgaccagggtcaagtggacccagtagtggcgattgcccgggac
cagagttcagtctacctgcagctgctgatgcacgaggcccaacccccctcccagttcaca
gttagtaccatcacaaggacgtacagaggctacaacttgtccaacaacgtgtctgatgtc
acaatcgagaacaatttgtccagagtcgtcaccgccatctcccacgctttcacctcctct
acctccaaagccctgacttttggctgctgtgaggccttatgcctcctggctacacatttc
ccagtgtgcacctggagtacaggctggcactgcggctatgtgagctccagcagcagcttc
tcttcccgctctagtctgaaccgcagcaggggccgggccctcagtgtgtcgcagaccggc
agtgctccagcctcttcagcctcctcctcgtctgcacccgacactgagcgcaggactctg
acagtaggcatggccaacatggtgctctccttactctcctccgcctggtttccacttgat
ctggcctcacaccaagatgcacttttgctgtctggcaatctgcttgctgctgtggctcct
aaatgcatgcgtaacccctgggctggagaggaggaaggcagcagtggtagcaccaacgcc
agtggaggccccaacaagatggaggagccctgggcagggctgtcggagcgctccctggtg
gccatggtggagcagctcttctcccacatactgaagatcctcaacatctgcgcccacgtg
ctggacgacaccccccccggaccagctattaaagccaccctcccctccttgagcaacacc
ccctccctcagtcccatcaggaggaaaggcaaggagaaggatattgtggagcccagtgct
gcccccatgagcccaaagaaaagtgttgacatcaacacaggcaggccagcagacggcacg
gggtccaccgccgtaaacaagtctaccaccgtcggcaacttctaccacctgcccacctac
ctcaagctctacgacgtcctcaaagctacacacgccaactacaaggtgacgctggacctc
cacagtagtcaggagaagtttggaggatttctgcgttcagctctagatgttctctctcag
ctcctggagctcaccacactacatgacatcagcaagtgtgtggaggaaatcttgagctac
ctcaagtcctgcttctccagagaacccaccatggcgacagtttgtgtacaacagctgttg
aagaccctgtttggcaccaacctggcctctcagtgcgagagcgtcctgagcggacccagc
cgctcccagggcaaggctctgcgcctcggctcctccagcctgcgacccggcctctaccac
tactgcttcatggcgccgtacacgcacttcacccaggctttagccgacgctagcctacgc
aacatggtgcaggccgaacaggagcaggacacctctggatggtttgatgtgatgcaaaaa
gcttcgaaccagctgaggtccaacattgcaaacgcgacacgccaaagaggagacaagaat
gccatccacaaccacatccgtctgtttgagccgctggtcatcaaagctctgaagcagtac
accaccagcacctcggtggcgctgcagagacaagtcctggacctgctcgcacagctggtg
cagctcagagtcaactactgcctgctggactctgatcaggtgttcatagggtttgtcctg
aagcagtttgagtacattgaagtgggacagttcagagattcggaggccatcatccccaac
atctttttcttcctggtgctcctttcatacgagcgctaccactccaagcagataatcagc
atccccaagatcatccagctgtgtgacggcatcatggcgagcggcaggaaagctgtcaca
catgccatcccagccctgcagccaatagtccacgacctgtttgtgctgaggggctccaac
aaagcagacgcaggcaaagagttggaaacacagaaagaggtggtggtctccatgctgctc
agactggtgcaacaccatcaggtgttggagatgttcatcctcgtgctgcagcagtgtcac
aaagagaatgaagacaagtggaagcgattgtcaaggcagattgctgacgtcattcttccc
atgatttctaagcagcagatgcacctggactctccggaggcgttgggggtgttgaacact
ctctttgagacggtggccccctcctctctccgacctgtggacatgctgctcaagagtatg
ttcaccaccccggttaccatggcttctgtagggacggtgcagctgtgggtgtcggggatc
ctggcggtgctccgggtgctcgtctcccagtctactgaggacatcgtcctgtcccgggtc
cacgagctctccctcacccctcatctcctctcctgccacacgatccgccgcctgcatcag
cagagcccctccccaagcgacccccccgctgccgacacactctgcggccaggacggtgag
gcacaaaaagccctgcctgaggaaaccttcgccaggttcctgctgcagctggtaggagtg
ttgctggatgacatttcctccagacaggttaaagtggacattacggagcagcagcacacc
ttctactgccagcagctgggcaccctgctcatgtgtctcatacatgtcttcaaaagtggt
atgttccgcaggatcaccgctgcagctacccgcctcctaaagggtgagggtgggggtgtg
cagcctggagcagaggctggcctgttttaccctttagaggctctgaacagcatggtgcag
tggatgattaccacccacccctccctggtgctgctgtggtgccaggtcctcctcatcatt
gactacaccaactactcgtggtgggcagaggtgcaccagacacccaggagacaaagcctc
tcgtgcacaaagctgctgagccctcactcctcaggggaaggagaagaggagaagcatgag
acccggttagccatggtcaaccgagagatcgtccgaaggggagcgctcatcctcttctgt
gactacgtgtgtcagaacctccatgactctgagcatctgacatggctgatcgtcaaccat
gtgcaggacctcatcagcctttcccatgagcctccagtgcaggatttcatcagcgctgtg
catcgtaactcagctgccagcgggctcttcatccaggccatccagtcccgctgtgacaac
ctcagtgctcctaccatgttgaagaagactctgcagtgtttggaaggcatccacctgagt
cagtccggctccctgctggtgctgtacgtggacaagctgctcaacacgcccttcagggtt
ctggctcgcatggtggacacactggcgtgtcgcagggtggagatgctgctggctgagaca
ctacagaacagtaaagctcaggtgcctgtggaggagctcaacaggatccaggaatacctc
cagaccagcggcctagctcagaggcatcagaggttctactccctgctggacaggttcaga
gccactgttaccgacacctgcagccccacgcctcctgtgacatcacaccccctcgacgga
gacccgcctcctgccccagagctggttaatgcagataaggagtggtacgtggctctagtg
aagtctcagtgttgtctccgtggagatgtttccctgttggagacgacagaactcctcacc
aaactgcctcccgctgacctcttaaacatcatgagctgcaaggagttcaacctaagcctg
ctgtgtccatgcctgagtatggggatgcagcggtgtgcccggggtcaggggtccctcttg
ttagagacagccttgcaggtgaccctagagcggctcgagggggtcaccgggtcacttcct
gtcccgcaccagtccttcctgccacccgcccagccacagccctactggaaacaactagct
gatgtgtatgatgagccaggtttctaccccagggttctgtcgctgtgcagagcgctgtcc
cagtacctgctgagtgtgagccagctgccctcctcactacacatcccccctgacaaggaa
cacctcatcacctctttcacctgcactgctgcagaggtggtggcgtggcgtctgctccag
aaccagctgcccctcagtgtggacctgcagtgggctctgtcctgcctgtgcctggccctg
cagcagccctgcgtctggaacaaactctcaactgcggagtacgccacgcacacctgctcc
ctcatctactctctacgcctcatcatcgttgcagttgctgtgagtcctggtgaccagctt
ctgcatccggagaagaagaagacgagggcagagagagacgccgaaggagacgaggtggac
acggcacatgctgaccacatttgcgagtggcaagcatgcgagatcatggcggagctggtg
gaaggcctgcagagcatcctttccctgggtcaccatagaaacagtgcatttcccgctttc
ctcacaccaaccctgcgcaacattgtcatcagtctatcccggctgcctctggtcaacagc
tacacccgagtacctccactggtttggaaactgggctggtcccctcagccaggaggagag
tacggcaccacgctgcctgagatccctgtggacttcctgcaggaaaaggatgtcttcaga
gagttcctctaccgcatcaacacactgggctggagcagcaggactcagtttgaggagacc
tgggccacactgctgggggtgctggtcacccaacccatcactatggaccaggaggaggag
acgcagcaggaggaggacttggagcgaacccagttgaatgtgttggcagtgcaggccatc
accagcctggtgctgagtgccatgaccctgcccactgctggcaaccctgcagtcagctgt
ctggaacagcagccccgcaacaagagcctcaaagccctggaaacacggtttggaaggaaa
ctggcagtgatcagaggcgaggtggagagagagattcagtctcttgtgtcgaagagagac
aacgtccacacacaccacccgtaccacgcctgggaccctgtgccctcgctgtcggcagcc
tccgctgcaggcacactgatcagccatgagaagctgctgcttcagatcaacacagagagg
gagatgggaaatatggactacaaactaggacaggtctccatccactcagtgtggctaggt
aacaacatcaccccactgagagaggaagaatggggggaggatgaagaagatgaagcagac
actccagcccccacctccccgcccacatctcctatcaactccaggaagcaccgtgcagga
gtggacattcattcatgttcccagttcctcctggagctctacagtcagtggctgatcccc
ggctccccgagcaacaggaggaccccgaccatcctcatcagtgaggtggtccgatcgctg
ctggcggtgtcggacctgttcacagagaggaaccagttcgacatgatgttctccaccctg
atggaactgcagaagctccaccccccagaggacgagatcctcaaccaatacctggtgcct
gccatctgcaaggctgccgccgtcctgggaatggacaaagcaatagcggagcccgtgtgc
cgcctgttggagaccaccctgcgcagcacccacctgcccagccgcatgggggctctgcat
ggggtgctgtacgtgttggagtgtgacctgctggacgacacggccaaacagctcattccc
accatctccgagtacctgctgtccaacctgcgggccatcgctcactgtgtgaacctgcac
aaccagcagcatgtgttggtgatgtgcgccgtggccttctacatgatggagaactaccct
ctggacgtaggggctgagtttatggctggcattatacaggtgtgtggtgtgatggtgtcg
gccagcgaggactccaccccctccgtcatctaccactgtgtgctgcggggcctggagcgc
ctgctgctgtcggagcagctgtcccgcgtggacggagaagcgctggtcaaactcagcgtg
gatcgagtcaacatgccgtcgccacacagagccatggctgccctgggcctcatgctcacc
tgcatgtacaccggcaaggagaaagccagccctgccagtcgccccgcccactctgaccct
caggccccggacagcgagtccatcattgttgccatggagagggtctctgtgctctttgac
aggatccggaaaggtttacccagcgaggctcgggtcgtggccaggatccttccccagttt
ctggacgatttcttccccccacaggacgtcatgaacaaggtcatcggagagttcctgtcc
aatcagcaaccttacccacaattcatggccactgtcgtctacaaggtgttccagaccctc
cacgccacaggacagtcctctatggtgagagactgggtgctgctgtccctgtctaacttc
acccagaggacgccggtggccatggcgatgtggagcctctcctgtttcttcgtctccgcc
tccacctcccagtggatctctgccctactgccacatgtgatcagccgtatgggctccagc
gaggtggtggacgtcaacctgttctgcctggtggccatggacttctaccggcaccagatc
gacgaggagctcgaccgcagggccttccagtccgtgttcgagaccgtggcctcgccgggg
agcccctaccaccagctgctgggctgcctgcagtccatccaccaggacacgtccctctga
DBGET
integrated database retrieval system
