Trematomus bernacchii (emerald rockcod): 117481568
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Entry
117481568 CDS
T09643
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117481568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117481568
03009 Ribosome biogenesis [BR:
tben03009
]
117481568
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117481568
Spliceosome [BR:
tben03041
]
Complex A
U2 snRNP components
U2 related factors
117481568
Complex B
117481568
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
117481568
Ribosome biogenesis [BR:
tben03009
]
Eukaryotic type
90S particles
Helicases
117481568
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
SRP54
Flavi_DEAD
DUF5549
nSTAND3
AAA_29
AAA_7
Motif
Other DBs
NCBI-GeneID:
117481568
NCBI-ProteinID:
XP_033985187
EnsemblRapid:
ENSTBNG00005016970
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MSKRHRLDLGDDYSSTKKRSEGRDRDRDRDREDRSRDRDRDRDRDRDRDRDSKPSTGPSN
ITVPMPCLAPIKQMAMQQQINPFTNLPHTPRFYEILKKRLQLPVWEYKENFSDIITRHQS
FVLVGETGSGKTTQIPQWCVDMVKGQPGPKRAVACTQPRRVAAMSVAQRVADEMDIMLGQ
EVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGV
LKEVVRQRGDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAA
IRTVIQIHMCEEEEGDALLFLTGQEEIDEACKRIKREVDDLGPDVGDIKIIPLYSTLPPQ
QQQRIFEAPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVES
LLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLK
KLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMV
IASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAFK
QNHEANQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYTNIRRALCT
GFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKP
EWLVKIAPQYYEMGNFPQCEAKRQLERIIAKLDSKEYSQY
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaagacatcgccttgatttgggggatgactactcttccaccaagaagaggtct
gaagggagagacagggatcgtgacagagaccgtgaggaccgctccagggacagggaccga
gatagggaccgggatcgagaccgggacagagactcaaagccttctactggcccgtctaac
atcacagtgcccatgccctgcttggcacccatcaagcagatggctatgcaacagcagatc
aacccattcaccaacctgccgcacactccacgcttctacgagatcctaaagaagcggtta
caacttccagtgtgggagtacaaggaaaacttcagcgatatcatcacacgtcatcagagc
tttgtccttgttggagaaactggctctggaaagaccacacagatcccacagtggtgtgtg
gacatggtgaagggccagcctggacctaagagggctgtagcctgtactcagcccaggaga
gtggcagctatgagtgtggctcaaagagtggcagatgaaatggacatcatgcttggacag
gaagtcggctactctattcgatttgaggactgcagctctgctaagactattctcaagtac
atgacagatggtatgttactgcgagaggccatgaatgacccgctgctggagcgttacggt
gtgatcattctggacgaggcccacgagcgaaccctggccacagatatcctgatgggagta
ctcaaggaggtggtgcgtcaacgaggagatctgaaggtgatcgtcatgagtgccacgctt
gatgccgggaagtttcaggtgtatttcgacaactgccctctcctcactattcccgggcgt
acacatcctgtagagattttctacactccagaaccagagcgagactacctcgaggcagcg
atccgcactgtcatccagattcatatgtgtgaggaagaagaaggagacgccctgctcttt
ctcactggtcaagaggaaatcgacgaggcctgcaaacggatcaagcgtgaggtagatgac
ctaggacctgatgttggagacatcaaaatcattccactgtattccacattaccaccgcag
cagcagcaacggatctttgaggctcctcctccaagaaagcccaatggtgcaataggaaga
aaggttgtggtttctacaaacattgctgagacctctctgacaatagacggtgtggtgttt
gtcattgatcctggatttgcaaagcaaaaggtttacaatccccgtatcagagtcgagtct
ttgcttgtcacggccatcagtaaagcttcggcccagcagagggcgggtcgagccggcaga
acccgtccagggaaatgtttccgcctctacacagagaaggcctacaaaactgagatgcag
gataacacataccctgagattcttcgatccaacttgggatctgttgtgctgcagctgaaa
aagctgggcatcgatgaccttgtgcactttgacttcatggaccccccagctccagagacg
ctgatgagggccctcgagctgctgaattacctggcagctctcaatgatgacggcgacctg
acggagctgggctccatgatggccgagttccctttggacccccagctggctaagatggtc
attgccagctgcgagtttaactgctctaacgagatcctttccattactgccatgctgtca
gtcccacagtgttttgtccggcccacggaggctaagaaggcggcagacgagtccaagatg
aggtttgctcacatcgacggagatcacttgacgctgctcaacgtctaccacgccttcaaa
caaaaccacgaggccaaccagtggtgctatgataactttgtcaactaccgctcactgatg
tcagctgacaacgtgcgccagcagctgtccaggatcatggaccgcttcaacctgccgcgc
cggagcacagagttcaccagcagagattattacaccaacatccgcagggcgctctgcacc
ggcttcttcatgcaggtggctcatttggagcgcacaggtcattacctcactgtcaaagac
aaccaagtggtccaactccatccctccacagtcctggaccacaagcccgagtgggtgctc
tataatgaatttgtcctgaccaccaaaaactacattcgcacttgcacagacatcaaacca
gagtggttggtgaagattgcccctcagtactatgaaatgggtaacttcccccaatgtgaa
gctaaaagacagctggagcgaatcattgccaaactagatagcaaggagtattcccagtac
tga
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