KEGG   Trematomus bernacchii (emerald rockcod): 117481849
Entry
117481849         CDS       T09643                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
tben  Trematomus bernacchii (emerald rockcod)
Pathway
tben03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:tben00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    117481849 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tben03021]
    117481849 (taf5l)
   03036 Chromosome and associated proteins [BR:tben03036]
    117481849 (taf5l)
Transcription machinery [BR:tben03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     117481849 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     117481849 (taf5l)
Chromosome and associated proteins [BR:tben03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     117481849 (taf5l)
    STAGA complex
     117481849 (taf5l)
    TFTC complex
     117481849 (taf5l)
    SAGA complex
     117481849 (taf5l)
    SLIK complex
     117481849 (taf5l)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_TEP1_2nd TFIID_NTD2 Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_SCAP WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_IFT140_1st RMC1_N Beta-prop_EIPR1 Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_WDR19_1st WD40_like PEP5_VPS11_N PROPPIN Nbas_N Beta-prop_IP5PC_F WD_LRWD1
Other DBs
NCBI-GeneID: 117481849
NCBI-ProteinID: XP_033985645
LinkDB
Position
Unknown
AA seq 615 aa
MKRVRTEQIQCAVTQYLKRRQYVETDGSLKGAKLFQSAEEMAASLTVQTESGCANIVSAA
PCQSDPQQYEAQFSRLRSFLSGIKSKNPPNHTSGKYETEISWAKEVSGLLYPLFVYLHLD
LVHCGLKGAVDGFYSRFHTLFLQDSEQRATIEQLRHVLTSQDVAANPKLSAFLEHKYVVH
LTEPAYSYLLRYLQSEDNSAICRALNTHLQVEVTASVRTDYQLYGAASGATAAPNPTSSW
AGVDGVEGGDGVEVPAGIPQSEVALEALQDCIKKVREGPPTLTTVCFYAFHNTEQMLNTA
EVSADSRLLSAGFDSSTVKLWSLRARKLKAKPHQVDVSHIHLACDVLEEEEEEEDGSGSE
VKTLRGHSGPVFRTAFLTDSSGLLSCSEDTTVRYWDLGSFTNTALYRGHAYPVWDVDLSP
CSLYFASGSQDRTARLWTFSRTYPLRIYAGHLADVDCVKFHPNSSYLATGSTDKTVRLWS
TQQGASVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRVKLWDLASGSLFKDLRGHTDSVT
SLSFSPDSSLVASSSIDNSVRVWDIRNSHGVAPADGSSNEMVGLYTGNTSNVLNVQFMAC
NLLLVSGTAQEKTEQ
NT seq 1848 nt   +upstreamnt  +downstreamnt
atgaagcgggttcgcactgagcagatccagtgtgccgtgactcagtacctgaagcggcgg
cagtatgtggaaactgacggttctctgaaaggtgccaagctcttccagtcagcggaggag
atggctgccagcctcacagtgcagacggagtcgggttgtgccaacatcgtctctgcggcg
ccgtgccagtccgacccgcagcagtacgaggctcagttctccaggctgcgctccttcctc
tcaggtatcaaatccaaaaatccaccaaatcacacgtctggaaaatatgaaacagaaata
tcctgggcgaaggaggtgagcggcctcctctacccgctgttcgtctacctccacctggac
ttggtgcactgcggcctgaagggggcagtggatggtttttacagccgtttccacaccctc
ttcctccaggacagcgagcagcgcgccaccatagagcagctccgtcatgtcctcacttct
caggacgtcgcagccaaccccaaactgagcgctttcctggagcacaagtacgtggtgcac
ctgacggagccggcgtacagctacctgctgcgatacctgcagagtgaggacaacagcgcc
atctgcagggcgctgaacacacacctgcaggtggaggtcaccgcgtccgtgcgcacagac
taccagctttatggagctgccagtggggcgactgctgccccaaaccccacctcctcctgg
gcaggagtagacggagtggagggtggggacggggtggaggttcctgcagggatccctcag
agcgaagtggccctcgaggctcttcaggactgcatcaagaaagtccgcgaaggcccgccc
acgctcaccaccgtgtgtttctatgccttccacaacacggagcagatgctgaacacggcg
gaggtttctgccgacagccggctactctccgccggattcgacagctccaccgtgaagctg
tggagcctgagagccaggaaactgaaagccaaaccgcatcaggtcgacgtgtcgcacatt
cacctggcctgtgacgtactggaggaggaggaggaggaggaggacggctccggcagcgag
gtcaagacgctgcgaggtcacagcggcccggtgtttcgcacggccttcctgacagacagc
tccggcctgctctcctgctccgaggacaccacggtgcgctactgggacctgggcagcttc
accaacacggcgctgtaccgcggacacgcctacccggtgtgggacgtggaccttagcccc
tgcagcctctacttcgccagcgggtcccaagaccgcaccgcacgcctctggacgttctcc
cgcacgtatccgctgcggatctacgccgggcacctggcggacgtcgactgcgtcaaattc
cacccgaactcaagctacctggccaccggatccacggataaaacggtgcgtctgtggagc
acccagcagggggcctctgtccgcctgttcaccggacacagaggccccgtgctgtctctc
gccttctcccccaacgggaagtacttggcgtccgccggagaggaccagagggtgaagctg
tgggacttagcttcagggtcgttgtttaaagacctgaggggacacacggacagcgtcacc
agcctgtccttcagccccgacagcagcctggtggcctcgtcctctatagacaactctgtg
cgggtgtgggacatcagaaactcccacggcgtggcgccagccgacgggtcgtctaatgaa
atggtgggactttacacagggaacaccagcaacgtgctgaacgtccagtttatggcctgc
aacctgctgctggtgagcggaacagctcaggagaaaacagaacagtag

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