Trematomus bernacchii (emerald rockcod): 117481955 Help Entry 117481955         CDS       T09643                                  Symbol palb2 Name (RefSeq) partner and localizer of BRCA2   KO K10897   partner and localizer of BRCA2 Organism tben  Trematomus bernacchii (emerald rockcod) Pathway tben03440   Homologous recombination tben03460   Fanconi anemia pathway Brite KEGG Orthology (KO) [BR:tben00001]  09120 Genetic Information Processing   09124 Replication and repair    03440 Homologous recombination     117481955 (palb2)    03460 Fanconi anemia pathway     117481955 (palb2)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:tben03400]     117481955 (palb2) DNA repair and recombination proteins [BR:tben03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     BRCA complex      117481955 (palb2)    FA (Fanconi anemia) pathway     Downstream FA components      117481955 (palb2) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  PALB2_WD40 Motif Other DBs NCBI-GeneID:  117481955 NCBI-ProteinID:  XP_033985790 LinkDB All DBs Position Unknown AA seq 1412 aa AA seqDB search MDAAALPLPSEQKAELCGDSVPFDEQLRTTLHCDDKEKLRRKLALLQREYLKTAQRLQRA ERFDAVRKHVRSRISQQNQGDPDVTSNPRLSPSPLILNATNGAATSEAQCEGHTGGLVDS DNSRRSQVIRFLLPSEDPCTETLTPSHDTPGGHRSSTALRLRSRRSRLRWERRSAEAGRS TDDNSEEGQEPSERMVVGSEGGDKTQGTEAVNEGEELCSGTESESPSLLLTHWNTTQNET GDIEGNQIQGQPEQKGKETELRSEGKKESESTSLVPSYWDPADRELNGAEQRNKRLCENS SDKDNELNSAEKTETEKSHENTAELKKEKSEMVGSGHDVKAVSLLDSCTLVEGLLFPAEY YVRTTRRMTQSQSQPNMQAIILSQLSAGRRCSRRGRGRGSNRDTPNPERSDQHTDTSLSA PTAASVVPCLDSQPAEPNTQSSSEISDRVSGCQIDTDACFSPIVTSARPARGRRKKRGRG RGRGRPQTPRCSLSLDSNQLGLAQKTSDDPPATSSPVDSSPSLHGADGSKPSVSPVQDVP QPASTNSTDTPPSSGVIVDPCSSASGPLGKVFPIFRKSGERSNGSTQISRDAASWQCLLL PSSPPAQPSLLPLPSLSPGSLFNNFDTIQDFHLPDDQFAFLKLHKLRQVEPFTSPSYNTR RSSRRFVSSDSERRLPLPLSLTPSITKSPQTTEAKQAATLPLSLRPTVTNSPHTAAASHS DLQNVSIIYSQSFTEDPEQVIKETLGEQQTENLQIECQSCATSTVSESGVQDCAGDRVDQ YKKQESIILNTPHTVEPQPHISFADRPGEHVKHYDIGCSDELQIKESSLILFEEQTVSPG VIHPLEEHMSTHNQTEDKDIIKTLSFDCSLQETPEEPSISRAAEQFCNVSEAPGESPVQN LHEKSPTQDSRESPRDRSMENQNKCVQPHSAQLLLSPALTSAPFITQPPPSSALLSSPTL PSLGLTPRLLPPPSSALLSSPTLPSLGLTPRLLPSSPSAPPLTLPPPHSPSIQALSPPAI SPCPSQIHQIQASSEPPCTDSQAQRVEAPPCRTVSGILPQGSGGRAETAEEHMMRCTHTL KAPAGGCLVDACLLRGASGGLCVAAAGKWAVCLWSQTAASDWSLTHTWAFNEPVIDVFPV PDAAGLMCVTLGQLEIREVRMLSCCSLSQLLLCDGVVQAVVCVSRSRVVTSSHSASGSSL QVFTLSDSGSTPGPQPLVSPGVCVGALAAVAGLPDALIGSDESGRLFVWNLKTGQLLQRI ILGEDLSHMACLRGYSYCGVLFVLLQHQLLSSLEEEVKEKEEESKNMALFSLVAINPLSG KSALATRLYPPNAWSGRLCEADVIGSSVVGLSQSGCVCVWQLWPRGASRMVPAPESEGWQ LARCGGEGTLLTGHHNGDVTLHCYSQTSLCHQ NT seq 4239 nt NT seq  +upstreamnt  +downstreamnt atggacgccgcggcgttgcctctgccgagtgagcagaaggcagagctgtgtggagatagt gtgccttttgatgagcagctaaggaccacactgcactgtgatgataaggaaaagcttcgt aggaagttggcactgttacaaagggagtacctcaagacagctcagagactacagcgtgct gagcgttttgacgcagtgcgcaaacacgtgaggagcagaatcagtcagcagaaccaggga gacccagatgtgacatccaacccccgtctcagcccctctccattgatactgaatgccacc aatggggccgccacaagtgaagctcagtgcgagggacacactggaggtctggtggattct gataactccaggaggagccaggtgatcaggttcctgctcccttctgaagatccttgcact gaaaccctgactcccagccatgacacacccggaggtcacaggtcgagcaccgctctgcgc ctcaggtctcgacgcagccgcctgcgatgggagaggaggagcgccgaggctggcaggagc acagacgacaacagtgaggaaggacaggagccgagtgagaggatggtggttgggagtgaa gggggagacaaaacacagggaacagaggctgtgaatgaaggtgaagagctatgttctggc actgagtctgagtctccatctctgctgctgacacactggaacacaacgcaaaatgaaaca ggagatatcgagggaaaccaaatacaaggacaaccagaacaaaagggaaaagagaccgag ttaagatctgaagggaaaaaagaatcagagtcaacttctttggtgccttcatattgggac cctgcagacagggaactaaacggcgcagagcagaggaataaaaggctttgtgaaaacagc agtgataaagacaatgaactaaattcagcagagaaaacagaaacggaaaaaagtcatgaa aatacagctgaattaaaaaaagaaaaaagtgagatggttggatcggggcatgatgtaaag gctgtgagtctccttgactcctgtaccctcgtggaaggactacttttccccgcagagtac tacgtccgaaccacaaggcgtatgacccaatcgcagagccagccgaacatgcaggctatc attctctcccagctgagcgccgggcgacgttgcagcaggcggggccgcggcaggggatcg aaccgggacacacccaaccctgaacgttcagatcaacacactgatacaagtttatctgcg ccaaccgctgcatctgtagttccttgtctggactcacagcctgctgagccgaacactcag agctccagcgagatttcagatcgagtctcaggttgtcagatcgacacggatgcttgtttt tctcctattgtcacctctgctcgtccagcaagagggaggaggaagaagagaggaagggga agaggaagagggagacctcaaaccccacgatgctctctcagtttagactccaatcagcta ggccttgcacaaaaaacctcagacgatcccccggcaacaagctccccggtcgattcctcc ccgtctcttcatggagctgatggatcaaaaccctccgtctctccggtgcaggacgtccca cagcctgcgtccacaaacagcacagatacaccgccttcctctggggtcattgttgatccg tgtagctctgcatctggacctctggggaaggtctttcccatctttcgtaagagcggcgaa aggagtaacggatccactcagatcagtagagatgcagcgagctggcagtgtctcctcctg ccctcctctcccccggcccaaccttctctgctccctctcccctctctgtctcctggctcg ctgttcaacaactttgacacgatccaggatttccatctccctgatgaccagtttgctttt cttaagctgcacaagctccgccaagtcgaaccttttacctcgccgtcttacaacacgcgc agaagcagccgccgttttgttagcagtgactcagagaggcgtcttccactgccgctcagc ctcacaccctccatcacaaagtcaccccagaccactgaagcaaaacaagctgcgacacta ccgctcagcctcagacccaccgtcacaaactcaccccataccgctgctgcttcacattct gacctgcaaaatgtgtcaataatatacagccagtccttcactgaagaccctgaacaagtt attaaggaaacccttggagagcagcagactgaaaaccttcagatagagtgtcagagttgc gccacctcaacagtgtctgagtcaggggttcaagattgtgctggtgaccgcgttgatcaa tataaaaagcaagagagtatcattctgaatactccccacactgtcgaaccacagcctcac atcagctttgcagacagacctggagaacatgtaaaacattatgacattgggtgttcagat gaacttcaaatcaaagagtcttctctcattttatttgaagaacaaacagttagtccgggt gtcatccatcctcttgaggaacatatgtcgacacacaaccaaactgaagacaaagatatc atcaagactctttccttcgattgctctctacaggaaacccccgaggagccttctataagc cgcgctgctgaacagttctgtaacgtcagcgaagctccaggagagtctcccgtacagaat ctgcatgagaagtctcccactcaagactcaagggaatcgcctagagacagatcgatggaa aatcaaaacaagtgtgtacagccccacagcgctcagctcctgttgagccctgctctgacc tcagcacccttcataacccagcccccgccctcctctgctctcctctccagccccacactg ccatcactaggactcaccccccgtctcctgcccccgccctcctctgctctcctctccagc cccacactgccatcactaggactcaccccccgtctcctgccctcctccccctctgcccct cctctcaccctgcctccccctcacagcccgtccatccaggccctctcccctccggctatc tctccgtgtccatcccagatccatcagatccaggcttcatctgagccgccgtgtacagac agccaggcccagagggttgaagctcctccctgcaggacagtctccggcatcctgccacag ggctcaggagggcgggcggagacggcggaggaacacatgatgagatgcacacacacacta aaggccccggcaggaggctgtctggtggatgcttgcctcctgcgtggagcctccggtggt ttgtgtgtcgccgcagcaggaaagtgggccgtgtgtctctggagtcagactgcagcttct gactggagcctgacacacacctgggccttcaatgagccagtgatcgatgtgtttcctgtg ccggacgctgcagggctgatgtgtgtgactctgggtcagttagaaatcagagaagtgagg atgctgtcgtgctgcagcctctcccagctgctgctctgtgacggcgttgttcaggcggtt gtgtgtgtgtccaggtccagagtggtaacttcctcacactcagcgtctggctccagcctg caggtgttcacgctctcagacagcggcagcacaccgggccctcagcctctggtgtctcct ggtgtttgtgtcggggccctcgctgctgtggctggacttcctgacgctctgattggctct gatgagagcggccgcctctttgtctggaacttaaagacgggtcagctgctgcagagaatc atcctcggagaagatttatcacacatggcctgtctcagaggatactcctactgtggagtg ttgtttgtcctgctgcagcatcagttgctcagctctctggaggaagaagtaaaagagaag gaagaggagagtaagaacatggctctgttctccttggtcgccattaatcctctgagtgga aaatctgccctcgctactcgactgtatccgcccaacgcctggtccggcaggctgtgtgaa gcagacgttatcggctccagcgtggtgggcctgagtcagagcggctgtgtgtgtgtgtgg cagctctggccccggggggcctccaggatggtgccggcccccgagagcgagggctggcag ctggctcgatgtgggggagagggaacgctgctgactggacatcacaacggagacgtcacc ctgcactgctacagtcagacttctctctgccaccaataa

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