Trematomus bernacchii (emerald rockcod): 117482021
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Entry
117482021 CDS
T09643
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117482021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117482021
03009 Ribosome biogenesis [BR:
tben03009
]
117482021
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117482021
Spliceosome [BR:
tben03041
]
Complex A
U1 snRNP components
U1 related factors
117482021
Complex B
117482021
Ribosome biogenesis [BR:
tben03009
]
Eukaryotic type
Pre-60S particles
Helicases
117482021
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
117482021
NCBI-ProteinID:
XP_033985862
LinkDB
All DBs
Position
Unknown
AA seq
629 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGSGGGSRGGPPPGKFGNPGERLRKKHWNLDELPKFQ
KNFYQEHSDSTRRPVQEIEQYRRNKEVTVKGRDCPKPIIKFHEAEFPNYVMEVIVNHNWT
DPTPIQSQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAP
TRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG
KTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLK
DYVQINIGALQLSANHNILQIVDVCNDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRCD
ELTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVIN
YDYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLIAVLREANQAINPKLIQMA
EDRGGRGRGGRGGYKDDRRDRYSGGGRSNFGGTSYRDGDRGFGGGPKSAFGGNKAQNGGS
YGGSGNSSGSYGNNNYSNSNGQGNFPTNQVGAFGNQSFQGPPQFGGMQRAAQNGMNHPPF
PFNSQPPPQAQQPPPPPMVPYPMPPPFPQ
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttcagacagagaccgtggacgagatagagggtatggtggaggaccccct
cgttttggtggtggtagcggtggaggcagtaggggcggacctcctccgggaaaatttggc
aaccctggtgagaggctgcggaagaagcactggaaccttgacgagcttccaaagtttcag
aagaacttttaccaggaacattccgattcaactcgcagaccagttcaagagattgaacag
taccgaagaaacaaagaagttacggtcaaaggcagggattgccccaagccaattataaaa
ttccatgaagctgaatttccaaactacgtcatggaagtcattgtcaatcataactggact
gatccaactccaattcagtcccaggggtggccagttgcgctgagtggcaaagacatggtt
ggcatcgctcaaacagggtctgggaaaacccttgcttatctcctacctgcaattgtgcac
attcaacatcaaccattcttggagcatggagatggacctatatgcttggtgctggcgccg
acacgtgagctggctcagcaggtgcaacaggtggctgctgaatatggcagggcctcccgt
ctcaagagcacctgcatctacggtggtgcgcccaagggaccacaaatcagggaccttgag
aggggtgtagagatttgcattgctaccccaggtcgtctcattgacttcctggagtgtggt
aagactaatttgcgtcgttgtacctatctggtgctggatgaagctgaccgcatgctggac
atgggatttgaacctcagatccgcaagatagtggaacaaattcggccagatcgtcagacc
ctgatgtggagcgccacctggcctaaggaagttcgccagctggctgaggacttcctgaag
gactatgttcagatcaacattggggcactgcagctcagtgccaaccacaacatcctgcag
atagttgatgtttgcaatgacatggagaaggaggacaaactgatccgtttgctggaggag
ataatgagtgaaaaggagaacaagactattatatttgtggagaccaaaaggcgttgtgat
gagctcaccaggaggatgagaagagatgggtggccagcaatgggaattcatggagacaag
agccagcaggagagggactgggtccttaatgagttcagatatggcaaagctccaatcctc
atcgctaccgatgtggcctcccgtggcttggatgtggaggatgtgaaatttgtcatcaat
tatgactaccctaactcctccgaggattatatccaccgcattggacgcacagcccggagt
caaaaaacgggcacagcctacacctttttcacccctaacaacatgaaacaagccagtgac
ctcatagctgtgctgcgcgaggccaaccaggccattaaccccaagctgatccaaatggca
gaggacagaggaggtcgtggaaggggtggaagaggtggctacaaggatgaccgtcgggat
aggtattctgggggtgggaggagtaacttcggaggtactagctacagggacggggataga
gggtttggcggtgggccgaagagtgcctttggtggtaataaggcccaaaatggtggcagc
tatggaggcagtggtaactctagtggtagctatggaaacaacaactacagcaacagtaat
ggacagggtaatttccccacaaaccaggtgggtgcgtttggaaaccaaagcttccagggc
ccccctcagtttgggggcatgcagagggctgctcagaatggcatgaaccacccaccattc
ccattcaactctcagccaccaccacaggcccaacagcctccaccaccaccaatggtgccc
taccccatgccaccacccttcccacagtag
DBGET
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