Trematomus bernacchii (emerald rockcod): 117482171
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Entry
117482171 CDS
T09643
Name
(RefSeq) RNA exonuclease 5-like
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117482171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tben03009
]
117482171
Ribosome biogenesis [BR:
tben03009
]
Eukaryotic type
Pre-60S particles
RNases
117482171
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RNase_T
RRM_3
Phosphodiest
Motif
Other DBs
NCBI-GeneID:
117482171
NCBI-ProteinID:
XP_033986064
LinkDB
All DBs
Position
Unknown
AA seq
793 aa
AA seq
DB search
MEPLSAEVTCNGRKRKRIAPAENKEVKRLKTEEGEETLESERSSRSPRISVLPDRLQQPI
TANDLTELLHYAALGKTAGVEQPSWCHLNLQKRVKAVNVVMIEGLTQSHFYKHYLTLQHL
RTNYSTRVTFTPSSTDLASGIFSSEVPESDDPSVSQRHNGSSDLPKGLRIHPVITKFGTK
RRGLTAYVLPEEEMVKKRWPVKGMPDFQDFVCTDSVDCVTDSSPLYGLDCEMCLTEKGNE
LARVSLVDSDGKCVLDELVKPPNRILDYVTRFSGITAAMLRPITTTLRNVQTRLKTLLPS
DAVLVGHSLNNDLVALKLIHRHVIDTSMLYRREFGQRFKLKVIAESVLNRQIQTEEKTGH
NPIEDALAALELAQYFIKKGPRQVVELHMEELWGYRIIEEPKDLAPAEPAPPQSHRFPDV
LQRHRRSVAFLGKRSDIALDLSNQQWLNSDKEVLASFRRQTRCPFLSVLQLPSLSNHLKK
SFPHLEHQRVCAHLRDLCVVLAGPLPAGSSEQEVRRLFRCCGPLRNIKMLNTTVRVHAEV
EFELLEGAELAVKTLNGLDMQGQSIKVQRPVYESMLDADLTLDALMCDNNTHLYAVKLNP
CMADSVHLSERDNGYTLNAKCSDVTSVKKVNGQHSQPKTKSKLSEETVRETFGLFGSVER
VALLQQSGKHARHAIIRFESSEGKRAALSSSEDLRKDNYLVCPSLTPHHLPSWTAVTTPT
TSVDPDKDEERSHMHISSQDEEMDLMMGKLDRRLQKLFRYLPEGTLSVVVLLGHTSDHGL
LSGLCLMEVKQES
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggagcccttatcggcagaagtgacatgcaacgggaggaagagaaagaggatcgcccct
gcagaaaataaggaggtcaagagattaaaaacagaagaaggagaggagactctggagtct
gaacgctcctctcgctcaccgaggatctctgtgctgcccgaccgccttcaacaaccaata
acagcgaatgatctgacagagctgctgcattacgccgctctggggaaaacagctggcgtt
gaacagcccagttggtgtcacctcaaccttcagaagagggttaaagctgtgaatgtggtg
atgatagaggggctgacccagagtcacttttacaaacactacctcactctgcagcacctc
aggaccaactacagcactagggtcacgtttactccatcctccaccgacctggcctcagga
atcttcagcagtgaagttcctgaatcagacgatccctctgtttcccaaagacacaatgga
agcagtgatttaccaaaaggcctgaggattcacccagtaatcaccaagtttgggaccaag
aggagaggactgacagcgtatgttctccccgaggaggagatggtcaagaaacgctggcct
gtcaaaggaatgccagacttccaggactttgtgtgcacagacagtgttgactgtgtgact
gacagcagccctctgtatggactcgactgtgaaatgtgtctgacagaaaagggtaatgag
ttggctcgtgtctctctggtggacagtgatgggaagtgtgtgctggatgaactggtgaaa
cctcccaacagaatcctcgactacgtcaccaggttctctggcataactgcagcgatgttg
cgaccaatcacaacgaccctacggaatgttcagacgaggctcaagacgctgttgcctagc
gatgcagtcctggtgggacactcactaaacaacgacctcgtcgctctgaaactgatccac
cgtcatgtgatcgacacctcgatgctgtacaggagagagttcggacagaggttcaaactg
aaggtcatcgcagagtccgtgctgaatcggcagatacaaactgaagagaagacgggtcat
aatcccatcgaggatgctttggcagccctggagctggctcagtattttataaagaaagga
ccgcgacaggtagtagagcttcatatggaggagctgtggggatataggataatagaggag
cctaaagacttggcacctgctgaacctgcacccccacagagtcacaggtttcctgacgtt
ctacaaagacatcgccggtctgttgcctttttagggaagcgctctgacatcgctctggat
ctgtccaatcagcagtggctcaactctgacaaggaggtgttagcgtctttccggagacag
accaggtgtccgttcctctccgtgctccagctcccttccctctccaaccatctgaagaaa
agcttcccccacctggagcaccagagggtgtgtgctcacctcagagatctgtgtgtggtg
ttggccggaccacttcctgctggatcctctgaacaggaagtgaggcgcctgtttcgctgc
tgtggaccgcttcgaaatatcaaaatgttgaacaccactgtccgggttcatgcagaggtg
gagtttgagcttctggagggagctgagctggctgtaaaaacgttgaatggactcgacatg
cagggacagtccatcaaggtccagcgtcctgtctacgagtcgatgctggacgctgatctg
actctcgatgctttgatgtgtgacaacaacactcacctctatgctgttaaactaaacccc
tgtatggctgacagcgtacacctgtctgaaagagacaatggatatacgttaaatgccaaa
tgttcagatgttacttctgttaaaaaagtaaacggtcaacattcgcaaccaaagacgaaa
tctaagctgtctgaggagacggtcagagagacgtttggtctctttggttcagtggagaga
gtcgccctgctgcaacaatctggaaaacatgcaagacatgcaatcataaggtttgaaagc
tcagaggggaaacgtgcagctctcagctcctctgaagatctcaggaaggacaactacctc
gtctgtccttcactaactcctcaccaccttccctcctggacggcagtaacaacaccgacc
acctcagtggatcctgacaaagacgaggagaggagccacatgcacataagctctcaggac
gaggaaatggatctcatgatggggaagttggaccgccggctacagaagctgttcagatat
ctcccagaaggcaccttgtctgtggtcgtgctgctcggacacaccagtgatcacggtctc
ctttctggtctgtgccttatggaggtcaagcaggagtcttaa
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