Trematomus bernacchii (emerald rockcod): 117482184
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Entry
117482184 CDS
T09643
Symbol
tnrc6c2
Name
(RefSeq) LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6C protein
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117482184 (tnrc6c2)
03036 Chromosome and associated proteins [BR:
tben03036
]
117482184 (tnrc6c2)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117482184 (tnrc6c2)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117482184 (tnrc6c2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
Mei5_like
THOC7
Motif
Other DBs
NCBI-GeneID:
117482184
NCBI-ProteinID:
XP_033986080
LinkDB
All DBs
Position
Unknown
AA seq
1985 aa
AA seq
DB search
MEEKKKKKQEEKNKTDVAQKKASDQKPKVPDPAPTKPSPGPPRHFHPASPTLPLSSSSSS
SSSSGNGKRASSSSQLQTQTPPQQQCQLSSASARYPPREVPPRFRQQEHKQLLKRGQPLP
AGALSALTLSSSSSSSPSSSYSSSSTTTGSTSPNSATSAASKRHPDISLQSGCIAQYETS
HWGASLPVDSCSSANSWDKVNIDKSDTEAWPSINHSSDTSHTAAQECTLGSASSNTDNSA
VTTTSSCRNLSMATGAAGQPAHYPSLKANNNMMTGPGSANTCGSRGWGADGKQDGMNGGR
VGMPNNWGVPNFNMNLNPNANPSAWPVLGQEAGGGCGIGPNAVSNSPSLPPGINGNGNMG
DGRMGGAENGGGGWGGLISANEHDQQHPSTNTNMSYKMEPSNLNTDGPNHTKQQQQQQAQ
EPMSPIHGLTGWGGQSPTESSQLNGDTTGSSVWGSGETKAADSPKESGWDSTPSGGHSAW
GRQGSGGGSSGSGGWGDWGKSSGGSKEATKGWDSVDAGSSGSVKEPPLSSWGQQPRPAPE
SEGSRDSTESQTDHRDRTSSTDCTPLLPRQDLDPRVLSNTGWGQTPIRQHTVWEMEEANS
DDEKRKGCSDAMAVSKSTGGPSSNTGGTINPKISPSQRSGSGEKNDSEGLSSSGWRANPP
QPTQTGSGWGDQPQSHSKAPNGTSGPSGWGEPLPTNVPRNGGKSSWGSEDKSPSWDNGMT
KSQPNTNPGWEEGPKSSHGWGNSNGGPTNSSTGDWGQTEVKKNGSSSSMWEGEGGNGGGG
GDGGWKESPRGGNRGGNWSKPAPTVSNNSWGETPHANGPAQGGWGSSKPQENNSSSSSSS
TGSGGGGSMGSWGGPGTVKQNPSSWGNSSKQEQGMDRSGWEEPSPPSMRRKMEIDDGTST
WGSPAPNSGNPAPNSGNPAPNSGNPAPNSGNPAPNSGNPAPNSKAVNMWDRNKPNNNPGN
SGPPPSKNGGVIIPNNNNNNHSVGPGNNNHHHTHHMHHHPNHSQPNHIQPPTHLQHHGNN
NGSSTNGTQHPGVGPQGRPPLANPGWGEVPSVQPKSEPAWGEPAAPTSSVDNGTSAWGKS
TGGAGGWGDGGHEPSGPYGRANGPTGSAPCKPGPKPMQESWGNGGEEMGMSSGQWDTEEG
DMWNSPTSQESSSSCNSWGNGPKKGPSKAKIGKPDEAWIMNRLIKQLTDMGFPRDPAEEA
LKSNNMNLDQAMSALLEKKTDLDKRGMGMSDYSNGMNKPMVCRPSALSKDPSDRNSYLDK
DGILSDEAPQSPFLPSPSMKLPLANSSLPGQGLGQGNPGLAMQNLNNRQIPSGMFGSSGA
AQTRAMQQQQQPPQPPVPPLSSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLNPALLTS
PINPQQMTLLYQLQQLQMAYQRLQIQQQMMQAQRNVSGPIRQQEQQVARTITNMQQQIQQ
HQRQLYQALLMKQQQVPSHSSSSSSSSAGLHPPGGHAGGHGSGKSTHDPYTGQHQSPGLS
DSMHTKEALSSPNAYSSYPLSGLNPNMNVNCMEVGGLSLKEPPQPQSRLSQWTHSNSMDS
LSGNSSNMENLNKHGTISAASSLGPPGKPPHMEDSYSPYNLMSSSESPTSPQDSWGPGKS
QNEKISNGTNINWPPEFCPGVPWKGLQNIDPENDPNMTPGSVPSGPTINTNIHDVNRYLL
RDRNGATSPAPSLENGSLPPPSSDWPVSGYNSSFSLSSSDGDSSGKMSDMKSTWSQGPIS
QSQASLSHELWKVPQGPRSNPAPSRPPPGLSHNKPSSTWGGNSLGLAQGWSNSYTSETTT
WSTDSSNRTSSWLVLRNLTPQIDGSTLRTLCMQHGPLITFHLNLTQGNAVVRYSSKDEAA
KAQKSLHMCVLGNTTILAEFAGEEEVNRFFAQGQSLGANTTSWQANPGANQNRMGGGGQS
HSMSQWSSSGGGGGGKPSGGDLLWGNVPQYSSLWGPPSGEDHRAIGSPTSINTLLPGDLL
SGESM
NT seq
5958 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaaagaaaaaacaagaagaaaagaacaagacggacgtcgctcagaaa
aaggcttctgatcagaaacccaaagtgccagaccctgctcccactaagcccagtcccggc
cccccccgccacttccaccctgccagccctacgctgcccctctcctcctcttcttcttct
tcttcttcttctggcaatggcaagcgcgcctcctccagtagccagctccagactcagacc
ccccctcagcagcagtgccagttgtcctctgccagtgctcgctacccgcccagagaggtg
ccaccccgcttccgccagcaggagcacaagcagctactgaagagaggccagccactgcct
gcaggagccctcagcgctctcaccctctcctcttcctcctcctcttcgccctcatcatct
tattcttcttcttctacgactaccggcagcacttccccaaactctgccacgtccgctgcg
agcaaacgccacccagacatatccctccagagtggctgtattgcccagtatgagacctct
cattggggagcctctttgccagttgacagctgctccagtgccaacagctgggacaaagtg
aatattgacaaaagtgacacggaagcttggccctccatcaaccacagtagtgacaccagc
cataccgcagcacaagaatgcaccttgggctcagctagctcaaacacagacaacagtgct
gtcacaaccaccagtagttgtagaaatctgagtatggccacaggtgcggcaggccagccg
gcccactacccctctcttaaagccaacaataacatgatgacaggacctgggtcagccaac
acgtgtggtagtagaggttggggcgcagatgggaaacaagatggtatgaatggtggtaga
gtaggaatgcccaataactggggggttcccaattttaacatgaacctcaatcccaatgcc
aacccatcagcctggcctgttctcggccaagaggctggtggaggttgtggtattggccct
aatgcagtgtcaaactccccatcccttccaccaggtattaatggcaatggaaacatggga
gatgggagaatgggaggtgcagagaatggcggtggaggttggggtggcctgattagtgcc
aatgaacatgatcaacagcacccttcaaccaacacaaacatgtcctacaaaatggaacct
tctaaccttaacactgatggaccaaaccacactaagcagcagcagcagcagcaagctcag
gagcctatgagccctattcatgggttaactggctggggaggccagtcccccactgaatca
tcccagctcaatggggacacaacaggcagctctgtatggggtagtggagaaaccaaggca
gctgactcccccaaggaatccggctgggactcgactccgtctggagggcattctgcatgg
ggccgccaaggcagtggtggtggcagtagtggaagtggtggctggggtgactgggggaaa
tcttctggtggaagcaaagaagcaactaaaggctgggactcagtagacgctggtagttct
ggttcagtcaaagaaccgccacttagctcatggggccagcagcctagaccagccccagaa
agtgagggtagtagggacagcaccgaaagtcaaactgaccacagagacaggacctccagc
acggattgtacccctcttctaccccggcaggatctggaccctagggtgctgagtaacacg
ggttggggacagacccccattcgacagcacactgtatgggagatggaagaagctaactct
gatgatgagaagagaaaaggctgctcagatgccatggcagtctccaaatccactggtgga
ccctcatccaacactggaggtaccatcaatccaaaaattagccccagtcagaggtctggg
tctggagaaaagaatgacagtgaagggttatcatcctctggctggagagccaatccgcct
cagcctacccagactggatcaggatggggggaccaaccgcagtcacacagcaaggcgcca
aatggcactagtggtcccagtggctggggcgaacctttgcctaccaatgttcctagaaac
ggaggcaaatcatcctggggttctgaggacaagtcacccagttgggacaatggcatgaca
aaaagtcagcctaacactaacccaggctgggaagagggtcctaaaagctctcatggatgg
ggcaatagtaatgggggccccactaactccagtacaggggattggggacagacagaggtc
aagaagaatggatcctccagcagcatgtgggaaggagaaggagggaatggaggaggtgga
ggtgatggtggatggaaggaaagccccaggggaggaaatagaggaggaaactggagtaaa
cctgctcctactgtgagtaataacagctggggggagaccccacatgccaatggcccagcg
cagggaggctggggctcttccaagccccaggaaaataacagcagtagcagcagcagtagc
actggcagtggaggaggtggcagtatgggttcatggggtggtcctggtactgtgaagcag
aacccatcaagctggggcaatagcagcaaacaggagcagggcatggatcgcagtggctgg
gaagagccctcccctccctccatgcgcaggaagatggaaatagatgatggaacgtccacc
tggggcagtcctgcgcccaacagcggcaatcctgcgcccaacagcggcaatcctgcgccc
aacagcggcaatcctgcgcccaacagcggcaatcctgcgcccaacagcggcaatcctgcc
cccaacagcaaggctgtcaacatgtgggatcgaaacaaacccaataataatccaggcaac
agcggcccacctcccagtaagaatggtggagtgattatccccaacaataacaacaacaat
cactcagttggccccggcaacaacaatcaccatcacactcaccacatgcaccaccatccc
aatcatagccagcccaatcatatccagcccccaactcacctgcaacatcatggaaacaac
aatgggtcatccaccaatggcactcaacatccaggcgtgggcccccagggtagacccccc
ctcgccaacccaggttggggagaggttcccagtgttcagcccaagtcagaacctgcttgg
ggagagccagcagctccaacatcatctgtggacaatggcacctccgcctggggcaagtcc
acagggggagcaggaggatggggagatggtggccacgagccctctggaccctacggcagg
gcaaatggacccacaggttctgcaccctgcaagccaggcccaaaacctatgcaagagagc
tggggaaatggaggagaggagatgggcatgtcgtccgggcaatgggacactgaggagggg
gacatgtggaacagccccacctcccaggagagcagctcttcttgcaactcctggggcaat
ggacccaagaaaggcccaagcaaggcgaagataggcaagccagatgaggcttggatcatg
aaccgtctcattaaacagctcactgacatgggctttccgagagaccctgctgaggaggct
ttgaagagcaacaacatgaaccttgaccaggccatgagcgccctgttggagaagaagaca
gacctggacaagcggggcatgggaatgtctgattacagcaacggcatgaacaagcccatg
gtgtgtcggccctcagcactctccaaagacccctccgaccgcaactcctatcttgacaag
gatggtattctgtcagatgaagccccccaatcaccgtttctgccttcccccagcatgaag
ctccccctggccaacagtagccttcctgggcagggtctgggacagggcaacccagggctg
gccatgcaaaacttgaacaacagacagatacccagtggaatgtttggcagtagtggagca
gcacaaacccgggccatgcagcagcagcagcagcctcctcagccaccagtgccacctctc
agctcctcccagcctagtctacgtgctcaagtgcctcagtttctctcccctcaggtccaa
gcacagctcttgcagtttgcagcaaaaaacattggtctgaaccctgcacttttaacctca
ccaataaaccctcaacaaatgactctcttgtaccaacttcagcaactgcaaatggcgtac
cagcgtttacaaatccagcagcagatgatgcaggcgcaacgcaatgtttccggccccatt
agacaacaagagcagcaagttgcacgtacaatcaccaacatgcagcagcagatccagcag
caccagcgtcagctgtaccaagcgctgctgatgaagcagcagcaagttccttctcattcc
tcctcctcttcctcctcctccgctggtctgcatccccccggtggccacgctggaggccat
ggttccggcaaatcaacccatgacccctacacaggccaacaccagtccccgggcctctcc
gactcaatgcacaccaaagaggcgctgtcttcgcccaacgcctacagctcctaccctctc
tctggactgaatccaaacatgaatgtaaactgtatggaggttgggggtctttccctgaag
gagccccctcagccccaatcccgcctgtcccagtggacacactccaactccatggacagc
ctctctggcaactcctcaaacatggagaacctcaataagcacggtaccatatctgctgcc
tcttccctcggcccccctgggaagcccccccatatggaggactcgtacagcccctacaat
ctaatgtccagctctgagtcccccaccagcccccaagatagctggggccctggcaagagc
cagaatgaaaagatctccaatgggaccaacattaactggcccccagagttctgccccggt
gtgccatggaagggtcttcagaacatcgaccctgagaatgaccccaacatgacccctggc
agcgtccccagcggtcccaccatcaacaccaacatccacgacgtcaatcgatacctactg
cgggacaggaatggagccacttccccagctccgtcactggagaatggctctctgcccccc
cccagcagtgactggccagtcagtggctacaatagctctttcagtctgtcttcctctgat
ggagacagctcaggaaaaatgtctgacatgaagtccacctggtcccaagggcccatctct
cagagccaggcctctctgtcccacgagctgtggaaggttcctcaggggccccgcagcaac
ccggccccctcccggcctccaccgggtctcagccacaacaagccctcctccacctgggga
ggcaactccctgggcctggcccaaggctggagcaactcctacacctctgagacaaccacc
tggagtacggacagctccaacaggaccagcagctggctggtgctgaggaatctcacccca
cagattgatggctcaactctgcggaccctgtgcatgcagcacggccccctgatcacattc
cacctcaacctgacccaggggaacgctgtggtgcgctacagctccaaggacgaggccgca
aaagcccagaagtctctgcacatgtgtgtgcttgggaacaccaccatcctggcggagttt
gccggggaggaggaggtgaaccgcttctttgcacaaggccagtcgctgggggctaacacc
accagctggcaggccaaccccggagccaatcagaacaggatgggcggaggcggacagtcc
cactccatgagccagtggagcagcagcggtggcggcggcggaggcaagcccagcggaggc
gacttgctgtggggcaacgtgccccagtactccagcttgtggggacccccgagcggagag
gaccacagggcgatcgggagccccacttccatcaacaccctgctgcctggagacctgctg
agtggggagtccatgtag
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integrated database retrieval system
