Trematomus bernacchii (emerald rockcod): 117482221
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Entry
117482221 CDS
T09643
Symbol
si:dkey-92j12.5
Name
(RefSeq) LOW QUALITY PROTEIN: multiple PDZ domain protein
KO
K06095
multiple PDZ domain protein
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
117482221 (si:dkey-92j12.5)
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Motif
Pfam:
PDZ
PDZ_6
PDZ_2
L27_2
L27_1
Motif
Other DBs
NCBI-GeneID:
117482221
NCBI-ProteinID:
XP_033986149
LinkDB
All DBs
Position
Unknown
AA seq
1917 aa
AA seq
DB search
MEIMDTHCALEAVERLQAKLKERGEAPTQEKLSLLKTVLQSPLFHHILSLQQAQRKPPAK
GKISKSVSMNCGPCHGMALELKALSHSDSYTWAIENRGTARSIYSDNSLTSLGSPDLSFS
DIYSDNCIHTESPYCTPPRISRTMSMGRNLSAIAHERRHVEMIELINDGKGLGFGIIGGR
STGVMVKTILPGGAAGRDKRLRSGDQILRIGDTDLAGMNSEQVAQVLRNAGTKVKLLIAR
DITKDNHLSSPVLSQDSLDGKLNDLKDDYDFSVQFTKNSRGLGFTISSYIGDLNSVYSAG
VIVKSIVKGSTVDQDGRINIGDIILSVDGVSLQGCSEQRAMEVLRRTGPLVRLRLLRKVV
RLSHILPPVPPLHPLRHSHSFHEGNPYKMGLNKIQETGICSLREISRRAAYANGRPRHDS
RNGVKLTPAEEEDLRKRWQHAVGRRYEVIVCQLERFGETSGLGISLEARAGHHYLCSVLP
EGPVGQSGRIFTGDQILEVNGIPLIGETHKEVVNILKELPMEVCLVCSHIVPPAIPDSDE
EDEDDTHLTLKELLAEFNDKLDQGCVIPCPTAEDITKRGVPPMSPPLAMWERDAQVVELE
KGELGLGFSILDYQDPEDATKTVLVIRSLVPGGVADRDGRLLPGDRLMFVNESDLEGSSL
DYAVHVLKSTGYGPVCIGVAKPLPLELCGGLTPISERSLRTSYDDTDSQSQINLLAEAAE
ANSNTWNSEDNSIIGPYYSTTENRLRHRFNIMEDYDRQQAPPLPPRTSFERTITVVRGNR
SLGMSVSAIKDGSGMLVRSMVQGGSVSQDGRLGVGDAILAINREPTSNLTNARARATLRR
HSVIGPEISITYVPAHQVDEYRVRLNLPPLASIAADSASSTPTPPNLSPEPGSTPARSPG
PVRAAASTPASYSLKPSATANFKAAAPDPAVVRGSASSKALIKGPAAVPTITPAPDSSWL
IPKPYMNKKEGNKEGQIVKEKKDRRSADGKISQLEVETKVDGKADGEEELHFHTTVSWDQ
PRSVRLTRTPGQSLGISIMGGRGMGRRLSSGEMMRGVFIKHISPDSPAALNGTLQTGDRI
LEVCGVDLRDASHEQTVEAIRRAGDSVVFLLQSGQHRSQSPMLANHERLTPQCYSHSSKE
AESLSLFLSVSPTNPFTPTPFKVPSTTSNKTDRRSPTTLPTPITVAAGEEGDPGRKKMLQ
RYGSLSGKLHMIELEKDPAARGLGISLSGNQDGSRARMSVHVAEIDPQGPAGLDGRICIG
DELLEINGQILYGRSQQNASTIINNAPSKVKIILIRNKSAQGPAAQGSTTECEDTVDSQA
DSTECGGLPRDIQHIILPQDYVGLGLCLAEGEARDGAVVRSLVQDGTVSKDGRIKVGDRI
IAVGDEPVAGLSVDKVSNLILKHRVTVKLSISCSKSLSPSLSLPPQSSNSPASLSSDSLP
ISFSSSLNSMQTSPTGRSDWPVSAPTTSDPMSCPVMPGTETTIEFCKGNVGLGLSIVGGC
DTLLGAVIIHEVNYGGAAQRDGRLQAGDQILEVNGIDLRQATHDEAIGVLRLTTQRVRLC
VFRHQEAYSEEDLWDVFSLELRTRPGEGLGFTTVGKSNDTGIFVSDIIRGGIADSDGRLL
LGDQILSINGEDVRAASQEHAHKLLQSCSEAMHLEVARFKAGLQYSQQSLSEDSDCSTLT
PPSGCDASLGHQMETDHKTGSYSFQDFPDRRTIIIQKGPRDSLGISVAGGMGSPHDNVPL
FIASMDTNGLAAKTRQLQVGDRILSINEVSIEGMTHVQAGLLLKTVTGTISLQVAAGSGG
CSTNDHTDVQARSSGQPSNLPRFHNNLSARTYNTISLERGSSGLGFSIVGGFSSPHGDLP
IYVKTVFDKGAAIEDGRLKRGDQIIAVNGHCLEGVTHAEAVDILKKTKGTVVLTVLS
NT seq
5754 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcatggatactcattgtgccttggaagctgtggagagacttcaagccaaactt
aaggagagaggagaagcccccacacaggagaagctctccctgctcaagacggtcctgcag
agccccctgttccatcatatactcagcttacagcaagctcagcggaagcccccggcaaag
gggaagatttccaaatctgtttccatgaactgtggcccctgccatggcatggcactggaa
ctgaaggcactgagccacagtgactcctacacatgggccatagagaaccgaggcactgcc
agatccatctatagcgacaacagcctcacttctctgggctccccggatctgtccttctca
gacatctactcagacaactgcattcacactgaatccccatactgcactccccctcgaatc
tcccgcaccatgtcgatgggtagaaacctgtctgctatcgcccatgagaggcgtcacgtg
gagatgatagagctaatcaatgatgggaaaggactgggttttggaatcattggcgggcgg
agcactggagtcatggtcaagaccatccttcctggaggagctgccggacgggataagcgc
ctgcgtagcggagatcaaatcctgcgcatcggggatacagatctggcaggcatgaacagt
gagcaggtggcacaggttctgcgaaatgctggcaccaaggtgaaactgctcattgccaga
gatattacaaaggacaatcacctctcctctcctgtcctcagccaggacagcctggacggc
aagctcaatgacttgaaggatgactatgatttcagtgtgcagttcactaagaacagtcgg
ggccttggattcaccatttctagctacataggtgacctaaactcagtctacagcgctggt
gtgatagtgaagagcatagtgaaggggagcactgtcgatcaagatggacgcatcaacatc
ggagacatcattctgtctgtggacggggtgagtctgcagggctgcagtgagcagcgggcc
atggaggtgctgaggaggacaggccccctggtcagactgaggttgctacggaaggtggtc
cgtctgagtcacatcctgcccccagttccccccctgcatcccctccgacactcccacagc
ttccacgagggcaacccctacaagatgggcctcaacaagattcaagagacagggatctgc
tcactgcgggaaatctcccggcgagcagcatacgccaacggacgaccccgtcacgattcc
agaaacggtgtgaaactgacgccagctgaggaggaagacctgaggaagaggtggcagcat
gcagtcggacggagatatgaagttattgtgtgtcagctggagcgttttggtgagacgagt
gggcttggcatcagtctggaggctcgggcgggacatcactacctctgctccgttttaccc
gaggggcctgttggtcaaagcggcaggatcttcaccggagaccagatattggaggtgaat
gggatccctctaattggagagacgcataaggaggtggtaaatattctgaaggagctgccg
atggaggtttgcctggtgtgctctcacattgtaccgcctgcaatccccgacagtgacgag
gaggatgaggatgatacacatctcaccttgaaagagctacttgctgaattcaatgacaag
ttggaccagggctgtgtcattccctgtcctacagctgaggacatcaccaagcgtggcgtg
cccccaatgtcccctcccctggccatgtgggagagagacgctcaggtggtcgaactggag
aaaggggagttaggacttggcttcagtatcctggactaccaggatccagaagatgccact
aaaactgttctggtaatccggtctctggtgcctgggggtgtagcagatcgagatggtcgc
ctgctgcctggtgatcgactcatgtttgttaatgaaagtgacttggaaggctcaagcctg
gattatgctgtgcacgtccttaaatccaccggttatggccctgtctgcattggagttgcc
aaaccactgccgctggaactgtgtggtggcctaacgcccatctcagagaggagcttgcgg
acttcttatgatgacactgacagccaaagtcagatcaacctgctagctgaggcagcggag
gctaacagcaacacttggaactctgaggacaacagcatcatcgggccgtattactctaca
acggaaaaccggctgcggcatcgtttcaacatcatggaagactacgacaggcagcaagca
ccacctctgcccccccgcaccagctttgagaggacaatcactgttgtccggggcaaccgt
agccttgggatgtcggtgagtgctatcaaggacggctcaggcatgctggtgcgcagcatg
gtccaggggggctctgttagccaggatggcaggctgggggtgggggatgccatcttggcc
atcaacagagaacctacctccaatctgaccaacgccagggccagagccacgctccgcaga
cactctgtcatagggccagagataagcataacctatgtcccagcccatcaggtggatgag
taccgtgtccgtctgaatttaccccctctggcgtccattgcagcagacagcgcctcctcc
acaccgaccccccccaacctttctccagaacccggctcgaccccggcgagatcaccaggt
ccagtcagagctgcagcctccactccagcttcatacagcctaaaaccctctgccacggcc
aattttaaagctgcagctccagatccagcagtagtcagaggctctgcttcatccaaagct
ctaatcaaaggtccagccgcggtccctaccataaccccggccccagactcaagttggctg
attccaaaaccttacatgaacaagaaggagggaaacaaagaaggacagattgtgaaggag
aaaaaggacaggcgtagtgcagatgggaaaatatcacagctggaagtagagacaaaggtg
gacggtaaagcagacggagaagaggagcttcattttcataccacagtttcttgggatcag
cctagaagtgtgcggttgactcgaacaccaggccagtccctgggtatcagcataatggga
ggcagaggcatgggccggagactgagcagtggagagatgatgaggggagtcttcatcaag
cacatcagccccgacagcccggcagcacttaatggcaccctccagactggagacaggata
ctggaggtgtgtggtgtggacctacgagatgccagccatgagcagacagtggaggccatc
cgccgggccggagactctgtggtcttcctgctccagtctggacagcacagatctcagtcc
cctatgcttgccaaccacgagagactgactccacagtgttactcacacagcagcaaggaa
gcagagagtctgagtctgttccttagtgtctcccctacaaaccccttcactcccaccccc
tttaaggtaccttcgacaacatccaataaaacggatcggaggagccccactactctccca
acaccaatcacagtggcagctggagaagagggcgatcctggcaggaaaaaaatgcttcag
cgttacggcagcctgtcaggaaagctccatatgattgagctggagaaggatcctgcggct
cgcggcctgggaatcagcctctctggaaaccaggatggttccagggcccgcatgagtgtc
catgtggcggaaatcgaccctcaaggacctgctggtttagatgggaggatatgtatcgga
gacgagctgctcgagatcaacggtcagatcttgtacggccgaagtcaacagaacgcctcc
accatcatcaataacgctccatcgaaagtcaagatcattctcatcagaaataaatcagcc
cagggtccagcggcgcagggatcgacaacagagtgtgaggacacagtggactcccaggca
gactctacagagtgtggaggattacccagagacatccagcacatcatcttacctcaggat
tacgtaggtcttggtctttgcctggcagagggggaggccagggacggagcggtggtcagg
tccctggtccaggacggcactgtcagtaaggatggcaggataaaggttggagacagaatc
attgcagtgggtgatgaacctgtggcaggactgtcagtggacaaggtgtccaatttgatt
ctcaaacatcgggtcactgtcaaactctccatcagctgctccaagagtctctccccctct
ctttctcttcctccccagtcatctaattcccctgcctctctctcctccgattctctccct
atttccttctcttcatcactcaactctatgcagacctctcctaccggacgttcggattgg
ccagtatcagctcccacaacttctgaccccatgagctgccctgtaatgcctggcacggag
accaccatagagttttgtaaaggaaatgtaggccttggtctcagcatcgtaggaggatgc
gacactctgctgggggcagtaataatccatgaagtaaattatggtggagccgcacagaga
gatggaaggctgcaggccggagaccagatactagaggtaaatggtatagacctgcgacag
gccactcacgatgaggccattggcgtgctgcggctcaccacccagcgtgtccgcctgtgt
gtcttcagacaccaggaggcgtacagcgaggaggacctgtgggacgtcttcagcctggag
ctgaggactcgtcctggagagggactagggttcaccactgtgggaaagagtaatgacacg
ggcatctttgtgtcagatatcatcagaggaggcatagcagattcagatggcaggttgttg
ctaggtgaccagattctgtcaatcaatggggaggatgtccgtgcagcatcgcaggaacat
gcacacaagcttctacagagttgcagtgaagcgatgcacctggaagtggctcgttttaaa
gcggggctgcagtactcacagcagagcctgagtgaagactctgactgttcaaccctgacc
cccccaagtggatgtgatgcttccctcggccaccagatggagacagatcataagacaggg
agctactcctttcaagacttccctgatagaagaacaataataatacaaaagggtccacgt
gactccctgggcatcagtgtagcaggaggaatgggcagtccccatgacaacgtacctctt
tttattgcttccatggataccaatggattggctgccaaaacgcggcaattacaggtagga
gacaggatcctcagtatcaatgaagtgtccatagagggaatgactcatgtccaagctgga
ctcctgctgaagacggtcacaggaaccatcagtctgcaggtggcagcgggttctggtggc
tgcagtacaaacgaccacactgatgtgcaagcgcggtcgtcaggccagcccagcaacctg
cctcgctttcataacaacctcagtgctcgtacgtataacaccatctctctggagaggggc
tcctcaggcctgggcttcagcatcgtaggagggttcagcagccctcacggagacctgccc
atctatgttaaaactgtcttcgacaagggggcggccatagaggacggccggctgaaacgt
ggagatcagatcattgctgtgaatggacattgtctagagggggtaactcacgctgaagct
gttgacatcctcaagaagaccaagggaactgtagtcctaacggtactttcttga
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