Trematomus bernacchii (emerald rockcod): 117482242
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Entry
117482242 CDS
T09643
Symbol
herc3
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC3
KO
K10614
E3 ubiquitin-protein ligase HERC3 [EC:
2.3.2.26
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117482242 (herc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tben04121
]
117482242 (herc3)
Enzymes [BR:
tben01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
117482242 (herc3)
Ubiquitin system [BR:
tben04121
]
Ubiquitin ligases (E3)
HECT type E3
117482242 (herc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RCC1
HECT
RCC1_2
Motif
Other DBs
NCBI-GeneID:
117482242
NCBI-ProteinID:
XP_033986178
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MLCWGNAKDGQLGIGLERNLLFEPRYCQVFNGRGLKDVACGGQHSIFLLQDGSVYTCGSN
SCGQLGQDKPGTSPELVAALDTQTIKMVSCGRAHSMAVNEQGQVFAWGAGEGGQLGLGTS
EVAVRIPRLVKRLCDHRISQVMCGNQHCIALSKDGQLFTWGQNTSGQLGLGKGEPSKLFP
HPLMSLAGIPLAQITAGGDHSFALSLSGAVFGWGKNRAGQLGLNDKQDRAVPCHIKFLRS
QKVVHISCGEEHTAALTKDGGLFTFGEGSWGQLGHGSTNNELLPRRVLELMGTEVSQITC
GRQHTLAFVPSSCVVYAFGCNSHGQLATGAPGDASSPFPLKAGFLTGSFHRSVTKIICGG
DHGFLLYSNEESSVPPDDFRVMNVSKSISPINNERLNSWRLRLMYSTDSTVINDIIIQLS
STACWNASFLEQSDDTHFKTNPKIPGIDLNSVRKLFETLSKPAFSGLQEQATKSFESLVI
PQLPRSPPDVEAMRIYLILSEYPVLLDSKNYIRLTIPLAMAILRLDANPAKVLDNWWCFV
DGSVFTRMVDMYKSIVVFMLTGGKTLLVPVFYENYFVATLRLLEKLHKVNLKARHVEYNR
FYIPDITNLVDIQEDYLKWFLSKADIKQSSSPSQSDFPSVNLCAYPFILNAQAKTTMLQT
DAELQMQMAVSGANLHNVFMLLTLEPHLARNPYLVLHVRRDHLVSDTLRELTMYSDVDLK
KPLKVIFDGEEAVDAGGVTKEFFLLLLKELMDPVYGMFTHYKESNLLWFSDKCFVEQNWF
HLIGIICGLAIYNSTVVDLHFPLVLYKKLLDVAPTLEDFKELSPTEARSLQQLLDYEGGD
VEEMFLLNFAITRENYGMTEVKELVPGGESISVDKNNRKEFVEAYLRYVFSDSVSDEYAA
FSSGFLKVCGGEILSLFQPSELMAMVVGNNNYNWEEMEKNAVYKGEYTATHPTVRLFWEV
FHEFPLEQKKQFLLFLTGSDRIPIHGMESMRIVIQSTTAEEHYLPVAHTCYNLLDMPRYQ
TKEILHRRLTRAVEQYEGFSLV
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgctctgttggggcaatgcaaaggatggacagttgggaataggtttggagaggaacctc
ctatttgagccaagatactgccaagtgttcaatggcaggggactgaaagatgtagcgtgt
ggaggccaacactctatattcctgctgcaagatggcagtgtgtacacatgtggttctaac
agctgtggacagctaggccaagacaaaccagggacttctccagagcttgtagcggcgctc
gacactcagaccataaagatggtgtcgtgtggtcgggctcattcgatggcggtcaacgag
caggggcaagtgtttgcgtggggggccggtgaagggggccagctcggcctggggacctca
gaggtggctgttcgaatcccaaggttggtcaagaggctgtgtgaccaccggatctctcaa
gtaatgtgtgggaatcagcactgcattgcactttcaaaagacggccagctgttcacgtgg
ggccagaacaccagcggtcagctcggcctggggaagggagaaccgagcaagctgttccct
caccccctcatgtctctggcgggtattcctctggcacagataaccgctgggggggaccac
agcttcgctctctccctgtctggagctgtgttcggatggggcaaaaacagagctggacaa
ctgggtctcaatgataaacaagatcgtgctgtcccgtgccacatcaagtttctgagatct
caaaaagttgttcacatcagctgtggagaggaacatacagcggccctcacaaaggacggc
ggcttgtttacatttggtgaaggctcgtggggtcagctgggtcatggttccaccaacaat
gaactgttacccaggcgagtgctggagctcatgggcaccgaggtgtcccagatcacctgt
ggcaggcaacacacgttggcgtttgtgccttcctcctgcgtggtgtatgcgttcggttgt
aacagccacggccagctggccacaggagcaccgggggatgccagcagcccgtttcctctc
aaggccggtttcctgactgggagtttccacagatcagtgaccaaaatcatctgtggagga
gaccacggcttcttactgtactctaatgaagagagttctgtccccccggacgacttcaga
gtgatgaatgtcagtaaatcaatatccccgatcaataatgaaagattaaattcatggagg
ctaaggctgatgtacagcacagactccactgtcataaatgacattataattcaactctcc
tctacggcttgttggaacgccagcttcttggaacaaagtgatgatacccactttaaaacc
aacccaaagatcccaggcatcgatctcaactctgtcagaaaactatttgagacgctcagc
aaacccgccttctctggacttcaggagcaggccaccaagagttttgagagtctggtgatc
cctcagctgccgcgctcccctcccgacgtcgaggccatgaggatctacctcatcttatct
gagtaccccgtcctgctggactccaagaactacatccgcctcaccatccccctcgcaatg
gccatcctgcggctggacgccaaccccgccaaagtattagataactggtggtgttttgtt
gacggcagcgtgttcaccagaatggtcgacatgtacaagagcatcgttgtgttcatgcta
acgggaggaaagacgctgctcgtaccggtgttttacgaaaactattttgtcgccacactg
cgtctgctggagaaactccacaaggttaacctaaaggcccgccatgtggagtacaaccgc
ttttatatccctgacatcaccaacctggtggacatccaggaagactacctcaaatggttt
ctgagtaaagctgacatcaaacaatcatcctccccatcgcagagtgacttcccctcagtg
aacctttgtgcctacccgttcatactgaacgctcaagccaagacaaccatgctgcaaaca
gacgccgagctgcaaatgcagatggcagttagcggtgcaaacctacacaacgtcttcatg
ctgctcacgctggaaccccaccttgctaggaacccttacttggtgctccatgtgcgcagg
gaccatttagtgagtgacacactacgtgagctcaccatgtactccgatgtggatctcaag
aaacctctgaaggtgatctttgatggagaggaggccgtggatgcaggtggagtaactaaa
gagttcttcctgctgctcttaaaggagctgatggatcctgtttatgggatgttcactcac
tacaaagagtccaacctgctgtggttctcagacaaatgttttgttgagcagaactggttt
cacctgatcgggatcatctgcggtctggccatctacaactccacggtggtggacctccac
ttccccctggttctctacaagaagctgctcgatgtggcgccaacgctggaggacttcaag
gagctctcccccaccgaggccaggagtctacaacaacttctggactacgaaggaggtgat
gtggaggagatgtttcttctcaactttgctattaccagagagaattatgggatgacagaa
gtcaaagagctcgttcccggaggagagagcatcagcgtggacaaaaacaacaggaaagag
tttgtggaggcctacctgcgctacgtgttctcggactcggtgagcgacgagtatgcagcc
ttctcttcaggcttcctgaaggtgtgcggcggggagatcctgtcgctgttccagccctct
gagctgatggccatggtggtcggcaacaacaactacaactgggaagagatggagaagaat
gctgtgtacaaaggggaatacacagccacccatccaacagtcagattgttctgggaagtt
ttccacgagttccctctggagcagaagaagcagttcttattgttcctgacgggcagcgac
cgtatccccatccacggcatggagagcatgcgcatcgtgatccagtcgaccacagcggag
gagcactacctgccggtcgcccacacctgctacaacctgctggacatgccccgctaccag
accaaagagatcctgcaccgccgcctgacccgggctgtggagcagtacgagggcttcagt
ctggtctga
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