KEGG   Trematomus bernacchii (emerald rockcod): 117482379
Entry
117482379         CDS       T09643                                 
Name
(RefSeq) THO complex subunit 4-like
  KO
K12881  THO complex subunit 4
Organism
tben  Trematomus bernacchii (emerald rockcod)
Pathway
tben03013  Nucleocytoplasmic transport
tben03015  mRNA surveillance pathway
tben03040  Spliceosome
tben05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:tben00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117482379
  09122 Translation
   03013 Nucleocytoplasmic transport
    117482379
   03015 mRNA surveillance pathway
    117482379
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    117482379
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tben03019]
    117482379
   03041 Spliceosome [BR:tben03041]
    117482379
Messenger RNA biogenesis [BR:tben03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     117482379
    TREX complex
     117482379
Spliceosome [BR:tben03041]
 Complex C
  Other components
   EJC/TREX
    117482379
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    117482379
SSDB
Motif
Pfam: RRM_1 FoP_duplication Btz
Other DBs
NCBI-GeneID: 117482379
NCBI-ProteinID: XP_033986387
LinkDB
Position
Unknown
AA seq 276 aa
MSDKMSMSLDDIIKLNKKGGGGGGGGGAGGRSSGQGGSSGRAGGSSRPARSRQNNFNRDR
NNRTTPYTRPRELPDKWQHDMFEEHAGGRRGQQSAVAERSVECNGKLLVSNLDFGVSDSD
VKELFAEFGDLLKASVHYDRSGRSKGTADVHFETNAAALKAMKHYNGVPLDGRPMKIQQL
TSDVDTQSRPSVQSSNGGFDRSRLGQPKFERSEKSDRGDRGERRERRQGGGGGGGGYRGR
GGRGGGGGGGREKRPQLSAEELDAQLDAYNAKMDTS
NT seq 831 nt   +upstreamnt  +downstreamnt
atgtccgacaagatgagtatgtccctggacgacattatcaagttaaataagaaaggcggc
ggcggaggcggtggcggcggcgctggaggaagatcatccgggcagggtggaagttctggt
cgggccggtggatcttcaaggccggccaggagtcgacagaataacttcaaccgtgataga
aacaacagaacaacaccgtacaccaggcccagagagttgccagacaaatggcagcatgat
atgtttgaggagcatgctggtggacgcagaggacaacagagcgctgtggcagaaagaagt
gtagaatgtaacggcaagctgctggtatccaatctggactttggtgtctctgactctgat
gtcaaggaattgtttgcagagtttggagacttactgaaggcgtctgtacactacgaccgc
tctgggcgcagtaaaggaacggccgatgttcactttgaaactaacgcagcagcactcaaa
gccatgaagcactataacggtgtcccacttgacggccgtcccatgaaaatccagcagctg
acttctgacgttgacacacagagcagaccatctgtacaaagttcaaatggagggtttgac
cgcagcagacttggacagcccaagtttgaaaggagtgagaagagtgataggggtgatcgc
ggtgaaaggagagaaagaaggcaaggtggtggtggcggcggtggaggttacagaggaaga
ggagggcggggaggaggaggcggaggaggaagagaaaaaagacctcaactttctgcagag
gagcttgacgcccagttggatgcatacaatgccaagatggacaccagctaa

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