KEGG   Trematomus bernacchii (emerald rockcod): 117482555
Entry
117482555         CDS       T09643                                 
Symbol
rnf4
Name
(RefSeq) E3 ubiquitin-protein ligase RNF4
  KO
K22651  E3 ubiquitin-protein ligase RNF4 [EC:2.3.2.27]
Organism
tben  Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:tben00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tben04121]
    117482555 (rnf4)
Enzymes [BR:tben01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     117482555 (rnf4)
Ubiquitin system [BR:tben04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    117482555 (rnf4)
SSDB
Motif
Pfam: zf-RING_2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_5 zf-C3HC4_3 zf-rbx1 zf-RING_4 zf-C3HC4_4 zf_RING_Vps8 Prok-RING_4 Rtf2 zf-UDP zf-RING_11 zf-RING_6 TRAF3_RING zf-RING_16 Prosystemin zf-RING_10 zf-ANAPC11 TerY_C Zn_ribbon_6 Rad50_zn_hook DZR
Other DBs
NCBI-GeneID: 117482555
NCBI-ProteinID: XP_033986578
LinkDB
Position
Unknown
AA seq 202 aa
MSSPQRKRRGTGSAPVPRLRTKTARRANARIASNTNSVANREASREASIAAEVSRSDGEA
TPTTETIDVMEDGVEEVVDLTCEGGEAVVDLTNNDSVLLVDEGPQNRRDPSGESYVVSSD
EEAAPPNAAVMPLGNTSSSRSAPGMISCPICLDMYSEIVDSGRLVVSTKCGHVFCSQCLR
DSLKSSHTCPTCRKKLTPRQYH
NT seq 606 nt   +upstreamnt  +downstreamnt
atgagcagccctcagaggaagagaagaggaacaggaagtgctccggttcccagactccgc
accaagaccgccagacgagctaacgctaggatagcatctaacactaacagtgtggcgaac
agagaagctagcagagaagctagcatagcagcggaggttagcaggtctgatggtgaagct
acccccacgactgagaccatcgacgtgatggaggacggtgtggaggaggtggtggatctc
acctgtgaggggggggaggctgtggtcgacctgacaaacaacgactctgtgctgctggtg
gacgaaggtcctcagaaccgcagagacccgagcggtgagagttacgtcgtcagcagtgat
gaagaggcggcgccccccaacgctgcagtaatgcccttagggaacacaagctcctccagg
tcggctccggggatgatcagctgtcctatctgtctcgacatgtactcggagatcgtcgac
agcggccgattggttgtttccactaaatgtggtcacgtgttctgcagccaatgtctgaga
gactctctgaagtcatcacacacctgccccacctgcaggaagaagctgacgccccgccag
taccac

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