Trematomus bernacchii (emerald rockcod): 117482562
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Entry
117482562 CDS
T09643
Name
(RefSeq) matrin-3-like
KO
K13213
matrin 3
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117482562
Spliceosome [BR:
tben03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
117482562
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
117482562
NCBI-ProteinID:
XP_033986588
LinkDB
All DBs
Position
Unknown
AA seq
1186 aa
AA seq
DB search
MSQKSQSDGGQKHFAAGRGLLAAAETLNYSMNDQRSNRQMGGMSMSSGVGSGVGIMENQE
GGGSQMSRRGHISNTMKLFASLGLSPSDLDALADIPEEEISVESLPRILMQLKSRKVDVG
DRRATASSMNLDAGYRGGGGGGGGWEGRMGSSSSSSLGSSRPSADFGFGSMQDSSQGFGV
NFGGGGGGGRERQFSDLSDRESYGGSTPSDPFLPRRMGALPSNGKIQDFLGSTPNMFPHV
CSLCDFDVHSTMEWNQHINGLRHDENRRQLLNMYPDWDPGMSSGRSGGGLLRPNMSEGLL
GAGPSSQTSSWGAGGGGGGTDLSGKNPPPQDKLRSRVVVVKYDRKPLSNKTLFAFTEPFG
RLREHLVLNNKAFLELHSHEEALDMVNYYQQHQANLYGKPITFYLSRRLQVIEKNNRGSD
RSVDLSMDRPMDRSMDRPMDRPMDRPMDRQMDRPMDRPMDRQMDRPMDRQMDRPMDRQMD
RPMDRQMDPPMDRPVRQVKGQESQVVFFNNMPREEEDKKELLTIAARFGEVEKHLFLTDQ
AFVQLGTPEDAEMLVKYYNVHSLTIKGRPIRLNICTKYKTLNVNKKLGGARGPRTGGPNA
SRTSSNASRTSSNPSRTSSNPSRTSSNPPKTSSNPPRTASSSSRSRSRSREERRREEEPK
AEEAEEAEEEQPAAGEEEEEVSGVMEGEEEEEKENEDVEEEEKEEEEEETVMETMEEEQE
VKQEEVPDDVTDDTPVEVGGAPGEITQGAESEAAPEPEVSAEEEPNAEPEENQEGEPPAD
SFEEDFLENMDDFVTLDELQEDEEEDEEEEEDTTDNSRKGGMRVVNIVGFRRGYKFMNDL
LALAKPFGKVVKHLVLDLRPEAYLQFTTEEEARAMATFYSCNVTASICGRPVRISHSTSY
PTIQCGSSKVVYLGQIPKCKYSDGDVLKLAEPYGRVRKYFLNRLKRECFVEMDKAEEAER
MAEDCKENPPKFNGKRLTVYVSRKYRQLKHGHQCPSRSKRESSGSSPQPSRSPEEPAAKK
SKEEEEEEEKLEQEEEKQEELMEEEEEKKEEEEKEEEEEKSCEDETKAETPAEKTPDVSE
PEQKSCQEQVIETSTNQNGDTEAPPPAEIRPITASLPLPPHDPDTPIGVEHVKMGFYCRV
CFLFYSNEETAKKTHCSSRAHYDKLQKHLEKEQSRAEKKKGKKTTS
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagaagtcgcagtcagacggcggtcagaaacattttgctgccggtcgaggactt
ctggccgccgctgagactttaaactacagcatgaacgatcagagatccaatcggcaaatg
gggggaatgtcaatgtcctcaggtgttggtagtggtgttggcatcatggagaaccaggag
ggtggtggttcccaaatgtcgcgtcgaggccatatcagcaacaccatgaagctttttgcc
agtttgggtctttctccctccgacctggacgctttggctgatatccccgaggaggaaatc
agcgtggaatcactgcctcgaatcctcatgcagctgaaaagccgaaaagtggacgttgga
gatcggagagcgactgcttcgagtatgaatttggacgcagggtaccgaggaggaggagga
ggaggaggaggatgggaggggaggatgggttcttcttcttcttcttctcttggttcttca
cggccctctgcagactttgggttcggatcgatgcaggattcgagccagggatttggggta
aacttcggaggtggtggaggtggaggaagagaaaggcagttttctgatctttccgatcga
gagtcctacggcggttcgaccccgtccgaccccttcctgccgcggaggatgggagcgctg
ccgtccaacgggaaaatccaggacttcttgggatccacgcccaacatgttcccccacgtg
tgctctctttgtgactttgacgttcactccaccatggagtggaaccagcacatcaacgga
cttcgacatgatgaaaaccgccggcagctgctcaacatgtatcctgactgggaccctggc
atgtcctccggcagaagtggggggggtctcctgcgccccaacatgtctgaagggctgctg
ggagctggaccctcgtctcagacctccagctggggtgcaggaggaggaggaggaggtacc
gatctgtcagggaagaacccgccgccacaggataagctgaggagcagggtggtggtggtg
aagtacgacaggaagccgctcagcaacaaaactctgttcgccttcacagagcccttcgga
cgcctgagggaacacctggtgctcaacaacaaggccttcctggagctgcacagccacgag
gaggctctggacatggtgaactactaccagcagcaccaggccaatctctacgggaagccc
atcaccttctacctgtcccgcagactgcaggtcatcgagaaaaacaaccgaggttcagac
cggtcggtggatctttcgatggatcgtccgatggatcgttcgatggatcgtccgatggat
cgtccgatggatcgtccgatggatcgtcagatggatcgtccgatggatcgtccgatggat
cgtcagatggatcgtccgatggatcgtcagatggatcgtccgatggatcgtcagatggat
cgtccgatggatcgtcagatggatcctccaatggaccggcctgtgaggcaggtcaaaggt
caagaaagtcaggtggtcttcttcaacaacatgcccagagaggaggaggataagaaggag
ctgctgaccatcgcggctcgattcggagaggtggagaaacacctgttcctcacagaccag
gcgtttgtgcagctggggactccggaggacgcggagatgctggtgaaatattacaacgtt
cactctctcaccatcaagggccgacccatccgcctcaacatctgcaccaagtacaagacc
ctcaatgtgaacaagaaacttggaggcgctcgaggcccaaggaccggaggaccaaacgcc
tccagaacctcctcaaacgcctccagaacctcctcaaacccctcaagaacctcctcaaac
ccctccagaacctcctcaaacccccccaaaacctcctcaaatccccccagaaccgcctcc
tcttcctccaggtccagatccaggagtcgggaggagaggaggagggaggaggaaccgaag
gctgaggaggctgaggaggctgaggaggagcagccggcggcaggagaagaagaggaggag
gtttcaggagtcatggagggggaggaggaagaggagaaggagaatgaggatgtggaggag
gaggagaaggaggaggaggaggaggaaacggtgatggaaactatggaggaggaacaggag
gtcaaacaggaggaggttcctgatgatgtcactgatgacacacctgttgaagtgggcggg
gctccaggggagatcacgcagggggcggagtcagaggccgcgccagaacccgaagtctct
gcagaagaagaaccgaacgcagaaccagaggagaaccaggagggagaaccgcctgctgac
agctttgaggaggacttcctggagaacatggatgactttgtgacgttggacgagctgcag
gaggacgaggaggaagatgaggaagaggaggaggacaccaccgacaactccaggaaaggg
ggcatgagggtggtgaacatcgtgggcttcaggcgaggttataagttcatgaacgacctt
ctggccctggccaagccgtttgggaaggtggtgaaacatctggtgctggacctcagacct
gaggcgtatcttcagtttaccacagaagaagaagctcgagctatggctaccttctacagc
tgtaatgtgacggcttctatctgcggtcgaccagtgagaatcagccattcaacgagctat
cctaccatccagtgtggatccagtaaagttgtttacctcggtcagatcccgaagtgtaaa
tactccgacggtgacgtcctgaaactggccgaaccgtacggaagagtccggaagtatttc
ctcaaccggctgaagagagagtgcttcgtggagatggataaggcggaggaagcggagaga
atggctgaagattgcaaagagaatcctccgaagttcaacgggaagcgactcacggtttat
gtcagcaggaagtaccggcagctcaaacacggacatcagtgtccgagcagaagcaagagg
gagagcagcggctcgtctccacagccctccagaagtcctgaggagcctgcagccaagaaa
tctaaagaggaggaagaggaggaggagaaactagagcaagaggaggagaaacaggaggaa
ctgatggaggaggaagaggagaagaaagaggaagaggagaaggaggaggaagaggagaag
agctgtgaagacgagaccaaagcagaaaccccggcagaaaaaactcctgacgtttctgaa
ccggaacagaagagctgccaggagcaggtgatagagacatcgaccaatcagaacggagac
accgaggccccgccccctgctgaaatcagaccaatcacagcgtctctgccgctgcctccc
cacgaccccgacacccccatcggtgtggagcacgtgaagatgggtttctactgccgcgtc
tgcttcctgttttactccaacgaggaaacagccaagaagacgcactgcagcagccgagcg
cactacgacaagctgcagaaacacctggagaaagagcagagccgcgcggagaagaagaaa
gggaagaagaccacgtcgtag
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